Cited by ...

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Jonathan L. Golob, Tomiko T. Oskotsky, Alice S. Tang, Alennie Roldan, Verena Chung, Connie W.Y. Ha, Ronald J. Wong, Kaitlin J. Flynn, Antonio Parraga-Leo, Camilla Wibrand, Samuel S. Minot, Boris Oskotsky, Gaia Andreoletti, Idit Kosti, Julie Bletz, Amber Nelson, Jifan Gao, Zhoujingpeng Wei, Guanhua Chen, Zheng-Zheng Tang, Pierfrancesco Novielli, Donato Romano, Ester Pantaleo, Nicola Amoroso, Alfonso Monaco, Mirco Vacca, Maria De Angelis, Roberto Bellotti, Sabina Tangaro, Abigail Kuntzleman, Isaac Bigcraft, Stephen Techtmann, Daehun Bae, Eunyoung Kim, Jongbum Jeon, Soobok Joe, The Preterm Birth DREAM Community, Kevin R. Theis, Sherrianne Ng, Yun S. Lee, Patricia Diaz-Gimeno, Phillip R. Bennett, David A. MacIntyre, Gustavo Stolovitzky, Susan V. Lynch, Jake Albrecht, Nardhy Gomez-Lopez, Roberto Romero, David K. Stevenson, Nima Aghaeepour, Adi L. Tarca, James C. Costello, Marina Sirota

Cell Rep Med. 2024 Jan 16; 5(1): 101350. Published online 2023 Dec 21. doi: 10.1016/j.xcrm.2023.101350

PMCID:: PMC10829755

Abstract Article PDF–5.4M

Is Cited by the Following 7 Articles in this Archive:

Data-driven insights can transform women’s reproductive health

Tomiko T. Oskotsky, Ophelia Yin, Umair Khan, Leen Arnaout, Marina Sirota

NPJ Womens Health. 2024; 2(1): 14. Published online 2024 May 14. doi: 10.1038/s44294-024-00019-x

PMCID:: PMC11104016

Abstract Article PDF–1.7M

Computational Approaches for Predicting Preterm Birth and Newborn Outcomes

David Seong, Camilo Espinosa, Aghaeepour Laboratory, Nima Aghaeepour

Clin Perinatol. Author manuscript; available in PMC 2025 Jun 1.

Published in final edited form as: Clin Perinatol. 2024 Jun; 51(2): 461–473. Published online 2024 Mar 8. doi: 10.1016/j.clp.2024.02.005

PMCID:: PMC11070639

Currently embargoed: Free in PMC on Jun 1, 2025; PubMed

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

Pierfrancesco Novielli, Donato Romano, Michele Magarelli, Pierpaolo Di Bitonto, Domenico Diacono, Annalisa Chiatante, Giuseppe Lopalco, Daniele Sabella, Vincenzo Venerito, Pasquale Filannino, Roberto Bellotti, Maria De Angelis, Florenzo Iannone, Sabina Tangaro

Front Microbiol. 2024; 15: 1348974. Published online 2024 Feb 15. doi: 10.3389/fmicb.2024.1348974

PMCID:: PMC10901987

Abstract Article PDF–1.3M

Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models

George I. Austin, Aya Brown Kav, Heekuk Park, Jana Biermann, Anne-Catrin Uhlemann, Tal Korem

Version 1. bioRxiv. Preprint. 2024 Feb 12. doi: 10.1101/2024.02.09.579716

PMCID:: PMC10888995

Abstract Article PDF–8.5M

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

Sabina Tangaro, Giuseppe Lopalco, Daniele Sabella, Vincenzo Venerito, Pierfrancesco Novielli, Donato Romano, Alessia Di Gilio, Jolanda Palmisani, Gianluigi de Gennaro, Pasquale Filannino, Rosanna Latronico, Roberto Bellotti, Maria De Angelis, Florenzo Iannone

Front Microbiol. 2024; 15: 1341152. Published online 2024 Feb 12. doi: 10.3389/fmicb.2024.1341152

PMCID:: PMC10895059

Abstract Article PDF–358K

Discovery of sparse, reliable omic biomarkers with Stabl

Julien Hédou, Ivana Marić, Grégoire Bellan, Jakob Einhaus, Dyani K. Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina A. Stelzer, Dorien Feyaerts, Amy S. Tsai, Edward A. Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T. Oskotsky, Alennie Roldan, Jonathan L. Golob, Marina Sirota, Thomas A. Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S. Angst, David K. Stevenson, Nima Aghaeepour, Andrea Montanari, Brice Gaudillière

Nat Biotechnol. Author manuscript; available in PMC 2025 Jul 2.

Published before final editing as: Nat Biotechnol. 2024 Jan 2 : 10.1038/s41587-023-02033-x. doi: 10.1038/s41587-023-02033-x [Epub ahead of print]

PMCID:: PMC11217152

Currently embargoed: Free in PMC on Jul 2, 2025; PubMed

The end is where we start from: withdrawal of 17-alpha hydroxyprogesterone caproate to prevent recurrent preterm birth

David B. Nelson, Christina L. Herrera, Donald D. McIntire, F. Gary Cunningham

Am J Obstet Gynecol. Author manuscript; available in PMC 2025 Jan 1.

Published in final edited form as: Am J Obstet Gynecol. 2024 Jan; 230(1): 1–9. Published online 2023 Oct 3. doi: 10.1016/j.ajog.2023.08.031

PMCID:: PMC10842149

Currently embargoed: Free in PMC on Jan 1, 2025; PubMed