Spectroscopy Journal

Spectroscopic techniques have emerged as crucial tools in the field of malaria research, offering immense potential for improved diagnosis and enhanced understanding of the disease. This review article pays tribute to the pioneering contributions of Professor Henry Mantsch in the realm of clinical biospectroscopy, by comprehensively exploring the diverse applications of spectroscopic methods in malaria research. From the identification of reliable biomarkers to the development of innovative diagnostic approaches, spectroscopic techniques spanning the ultraviolet to far-infrared regions have played a pivotal role in advancing our knowledge of malaria. This review will highlight the multifaceted ways in which spectroscopy has contributed to the field, with a particular emphasis on its impact on diagnostic advancements and drug research. By leveraging the minimally invasive and highly accurate nature of spectroscopic techniques, researchers have made significant strides in improving the detection and monitoring of malaria parasites. These advancements hold the promise of enhancing patient outcomes and aiding in the global efforts towards the eradication of this devastating disease. Full article

Fluorinated organic compounds have demonstrated remarkable utility in medicinal chemistry due to their enhanced metabolic stability and potent therapeutic efficacy. Several examples exist of fluorinated non-steroidal anti-inflammatory drugs (NSAIDs), including diflunisal, flurbiprofen, and trifluoromethylated pyrazoles celecoxib and mavacoxib. These trifluoromethylated pyrazoles, which are most commonly constructed through the cyclocondensation of a trifluorinated 1,3-dicarbonyl and an aryl hydrazine, are also found in numerous other drug candidates. Here, we interrogate the effects of solvents and the presence of Brønsted or Lewis acid catalysts on catalyzing this process. We highlight the utility of benchtop ¹⁹F NMR spectroscopy in enabling the real-time quantification of reaction progress and the identification of fluorinated species present in crude reaction mixtures without the need for cost-prohibitive deuterated solvents. Ultimately, we find that the reaction solvent has the greatest impact on the rate and product yield, and also found that the relationship between the keto-enol equilibrium of the dicarbonyl starting material pyrazole formation rate is highly solvent-dependent. More broadly, we describe the optimization of the yield and kinetics of trifluoromethylpyrazole formation in the synthesis of celecoxib and mavacoxib, which is made possible through high-throughput reaction screening on benchtop NMR. Full article

Ethyl maltol was investigated using matrix isolation infrared spectroscopy and DFT calculations. In an argon matrix (14.5 K), the compound was found to exist in a single conformer (form I), characterized by an intramolecular hydrogen bond with an estimated energy of ~17 kJ mol⁻¹. The IR spectrum of this conformer was assigned, and the molecule’s potential energy landscape was explored to understand the relative stability and isomerization dynamics of the conformers. Upon annealing the matrix to 41.5 K, ethyl maltol was found to predominantly aggregate into a centrosymmetric dimer (2× conformer I) bearing two intermolecular hydrogen bonds with an estimated energy of ca. 28 kJ mol⁻¹ (per bond). The UV-induced (λ > 235 nm) photochemistry of the matrix-isolated ethyl maltol was also investigated. After 1 min of irradiation, band markers of two rearrangement photoproducts formed through the photoinduced detachment-attachment (PIDA) mechanism, in which the ethyl maltol radical acts as an intermediate, were observed: 1-ethyl-3-hydroxy-6-oxibicyclo [3.1.0] hex-3-en-2-one and 2-ethyl-2H-pyran-3,4-dione. The first undergoes subsequent reactions, rearranging to 4-hydroxy-4-propanoylcyclobut-2-en-1-one and photofragmenting to cyclopropenone and 2-hydroxybut-1-en-1-one. Other final products were also observed, specifically acetylene and CO (the expected fragmentation products of cyclopropenone), and CO₂. Overall, the study demonstrated ethyl maltol’s high reactivity under UV irradiation, with significant photochemical conversion occurring within minutes. The rapid photochemical conversion, with complete consumption of the compound in 20 min, should be taken into account in designing practical applications of ethyl maltol. Full article

Here, we present a general framework for computing the infrared anharmonic vibrational spectra of polyatomic molecules using Born–Oppenheimer molecular dynamics (BOMD) with PyRAMD software. To account for nuclear quantum effects, we suggest using a simplified Wigner sampling (SWS) approach simultaneously coupled with Andersen and Berendsen thermostats. We propose a new criterion for selecting the parameter of the SWS based on the molecules’ harmonic vibrational frequencies and usage of the large-time-step blue shift correction, allowing for a decrease in computational expenses. For the Fourier transform of the dipole moment autocorrelation function, we propose using the regularized least-squares analysis, which allows us to obtain higher-frequency resolution than with the direct application of fast Fourier transform. Finally, we suggest the usage of the pre-parameterized scaling factors for the IR spectra from BOMD, also providing the scaling factors for the spectra at the BLYP-D3(BJ)/6-31G, PBE-D3(BJ)/6-31G, and PBEh-3c levels of theory. Full article

During the restoration and digitalization intervention of the Manoscritto Parmense (Ms. Parm.) 3285 codex, a 14th-century illuminated volume that contains the three books of Dante Alighieri’s Divina Commedia belonging to the Biblioteca Palatina of Parma, the deposits present in the center of some bifoliums were removed using soft bristle brushes and collected. A preliminary observation of these deposits with a stereomicroscope allowed the detection of some pigment grains of different colors, likely detached from the full-page illuminations at the beginning of each book. These grains of the pigments were then analyzed in the Bologna ENEA Research Centre through Scanning Electron Microscopy (SEM), EDX microanalysis, and micro-Raman spectroscopy, allowing the identification of the minerals or the compounds used as pigments. Consequently, some pigments that were commonly used in the Middle Ages such as gold leaf, typically employed in illuminations and the decoration of heading initials, cinnabar red, and different types of blue pigments, including traces of lapis lazuli and azurite, were identified. Full article

Fluorescence resonance energy transfer (FRET)-PCR is widely recognized for its high sensitivity and specificity in pathogen detection. However, there are some gaps in probe design when it is applied for simultaneous detection and differentiation of similar targets. This study aims to investigate the effects of the numbers and position of nucleotide mismatches (NM) in probe on PCR efficiency and melting temperature (T_m). The results indicated that NM at the center reduces amplification efficiency and T_m more significantly than NM at the 5′-terminal or 3′-terminal of the probe. Full article

The adsorption of p-aminothiophenol (PATP) on metallic nanostructures is a very interesting phenomenon that depends on many factors, and because of that, PATP is an increasingly important probe molecule in surface-enhanced Raman spectroscopy (SERS) due to its strong interaction with Ag and Au, its intense SERS signal, and its significance in molecular electronics. In our study, the SERS spectra of PATP on silver colloids were investigated and we considered several factors, such as the effect of the adsorbate concentration, the nature of the metallic nanoparticles, and the excitation wavelength. Differences between the SERS spectra recorded at high and low concentrations of PATP were explained and DFT calculations of different species were performed in order to support the experimental results. Additionally, time-dependent density-functional theory (TD-DFT) calculations were used to simulate the UV spectra of each species and to determine the MOs involved in each transition. The presence of different species of PATP adsorbed onto the metal surface gave rise to the acquisition of simultaneous SERS signals from those species and the consequent overlapping of some bands with new SERS bands coming from the dimerization of PATP. This work helped to discern which species is responsible for each SERS spectrum under particular experimental conditions. Full article

Gamma spectroscopy is an important analytical technique across various fields. Gamma spectroscopy uses the energy spectra of emitted gamma rays to examine the type and quantity of isotopes that exist in samples. Like any other analytical technique, traditional gamma spectroscopy encounters challenges that in some cases make the analysis uncertain. Machine Learning (ML) algorithms have been proposed as an approach for enhancing the precision and robustness of gamma spectroscopy. The current study introduces the basics behind ML and illustrates how they are applied in gamma spectroscopy using case studies. Major findings discussed herein demonstrate the developmental capability that ML has in improving gamma spectroscopy. Radioisotope identification, optimizing detector performance, and simplifying environmental monitoring processes have been the main areas in which ML algorithms have been deployed for improvement. These include the ability to predict and provide real-time spectrometry, among others, even though these opportunities come with their shortfalls such as the necessity for huge training datasets. This review explains that integrating ML into gamma spectroscopy marks a major change from current analytic techniques, with possible further developments in radiation detection and environmental science. It serves as very useful material for those studying or practicing AI and gamma spectroscopy and want to know more about it or need guidance on what is happening so far regarding AI integrated into gamma spectroscopy analysis. Full article

A hand-held NIR spectrophotometric method was developed, validated, and applied for the determination of tadalafil in tablets. The aim of our work was to develop analytical methods based on vibrational techniques using low-cost portable equipment. Based on different chemometric modeling, we attempted to validate the method, which gave encouraging results from the principal component analysis (PCA), DD-SIMCA, and PLS modeling. Following this, we optimized the method using an appropriate experiment plan. For validation, we used the total error approach with acceptance limits set at ±10% with a risk level of 5%. The method showed that it was possible to perform both qualitative and quantitative analysis of pharmaceutical products using low-cost portable NIR systems with chemometric tools. The developed approach enabled the completion of the first step in implementing an NIR method for quality control of tadalafil-based drugs in the DRC. Validation difficulties of the PLS method resulted from the lack of information about inter-day serial variations of spectral responses. It would be interesting to extend the study to a larger calibration interval in order to correct uncertainties that may result from the variability observed under different conditions and to verify robustness. These are the limitations of this work, but the results are nevertheless very encouraging. Full article

The effect of nuclear quadrupole coupling of a single nucleus on the rotational spectra of diatomic molecules is given. By careful selection of examples, procedures are given for the analysis of successively more complicated spectra. The microwave spectra of some alkali halides, interhalogen diatomics, and deuterium halides provide excellent examples for analysis and for student exercises. Full article

The conformations of trifluoroacetyl triflate, CF₃C(O)OSO₂CF₃, were investigated through experimental vibrational methods (gas-phase FTIR, liquid-phase Raman, and Ar matrix FTIR spectroscopy) and density functional theory (DFT) calculations. A potential energy surface was computed using the B3P86/6-31+g(d) approximation as a function of the dihedral angles τ₁ = CC−OS and τ₂ = CO−SC. The surface reveals three minima, which were further optimized using the B3LYP method with various basis sets (6-31++G(d), 6-311++G(d), tzvp, and cc-pvtz). The global minimum corresponds to a syn–anti conformer (the C=O double-bound syn with respect the O−S single bond and the C−O single bond anti with respect to S−C single bond). The other two minima represent enantiomeric syn–gauche forms. The Ar matrix FTIR spectrum exhibited clear evidence of the presence of two conformers. Furthermore, the randomization process observed following broadband UV–visible irradiation facilitated the identification of the IR absorption of each conformer. Based on the Ar matrix FTIR experiments, the vapour phase of trifluoroacetyl triflate at room temperature was composed of approximately 60–70% of the syn–anti conformer and 30–40% of the syn–gauche form. Full article

Attention deficit and hyperactivity disorder (ADHD) is a prevalent neurodevelopmental condition, impacting approximately 10% of children globally. A significant proportion, around 30–50%, of those diagnosed during childhood continue to manifest ADHD symptoms into adulthood, with 2–5% of adults experiencing the condition. The existing diagnostic framework for ADHD relies on clinical assessments and interviews conducted by healthcare professionals. This diagnostic process is complicated by the disorder’s overlap in symptoms and frequent comorbidities with other neurodevelopmental conditions, particularly bipolar disorder during its manic phase, adding complexity to achieving accurate and timely diagnoses. Despite extensive efforts to identify reliable biomarkers that could enhance the clinical diagnosis, this objective remains elusive. In this study, Raman spectroscopy, combined with multivariate statistical methods, was employed to construct a model based on the analysis of blood serum samples. The developed partial least-squares discriminant analysis (PLS-DA) model demonstrated an ability to differentiate between individuals with ADHD, healthy individuals, and those diagnosed with bipolar disorder in the manic phase, with a total accuracy of 97.4%. The innovative approach in this model involves utilizing the entire Raman spectrum, within the 450–1720 cm⁻¹ range, as a comprehensive representation of the biochemical blood serum setting, thus serving as a holistic spectroscopic biomarker. This method circumvents the necessity to pinpoint specific chemical substances associated with the disorders, eliminating the reliance on specific molecular biomarkers. Moreover, the developed model relies on a sensitive and reliable technique that is cost-effective and rapid, presenting itself as a promising complementary diagnostic tool for clinical settings. The potential for Raman spectroscopy to contribute to the diagnostic process suggests a step forward in addressing the challenges associated with accurately identifying and distinguishing ADHD from other related conditions. Full article

In St. Jacob’s parish church in Ormož, Slovenia, mural paintings from around 1350–1370 are partially conserved in the northeastern corner of the main nave. They are almost completely black, indicating a large-scale pigment degradation. They were studied as a part of a larger research project aiming to identify materials applied and their possible degradation. First, they were studied in situ, and next, extracted samples of plaster, pigments, and colour layers were analysed by optical microscopy, Raman spectroscopy, FTIR spectroscopy, SEM-EDS, and XRD. Haematite, green earth, malachite, azurite, and tenorite were identified, showing that azurite and perhaps also malachite degraded to black tenorite, probably due to their fine grinding and their application directly on the fresh plaster. The plaster is made with small and large amounts of aggregate with mostly quartz with some impurities, which makes it fragile. The original appearance of these murals was of bright blue and green colours. Full article

Laser-induced breakdown spectroscopy (LIBS) has evolved considerably in recent years, particularly the application of portable devices for the elemental analysis of solids in the field. However, aqueous analysis using LIBS instruments, either in the laboratory or in the field, is rather rare, despite extensive research on the topic since 1984. Thus, our comprehensive review aims to provide a clear overview of this research to offer guidance to new users. To achieve this, we examined the literature published between 1984 and 2023, comparing various settings and parameters in a database. There are four different categories of LIBS instruments: laboratory-based, online, portable, and telescopic. Additionally, there are four main categories of sample preparation techniques: liquid bulk, liquid-to-solid conversion, liquid-to-aerosol conversion, and hydride generation. Various experimental setups are also in use, such as double-pulse. Moreover, different acquisition settings significantly influence the sensitivity and therefore the detection limits. Documentation of the different methods of sample preparation and experimental settings, along with their main advantages and disadvantages, can help new users make an informed choice for a particular desired application. In addition, the presentation of median detection limits per element in a periodic table of elements highlights possible research gaps and future research opportunities by showing which elements are rarely or not analysed and for which new approaches in sample preparation are required to lower the detection limits. Full article

Spectroscopic ellipsometry (SE), a non-invasive optical technique, is a powerful tool for characterizing surfaces, interfaces, and thin films. By analyzing the change in the polarization state of light upon reflection or transmission through a sample, ellipsometry provides essential parameters such as thin film thickness (t) and optical constants (n, k). This review article discusses the principles of ellipsometry, including the measurement of key values ∆ and Ψ, and the complex quantity ρ. The article also presents the Fresnel equations for s and p polarizations and the importance of oblique angles of incidence in ellipsometry. Data analysis in ellipsometry is explored, including the determination of bandgap and data referencing the electrical properties of materials. The article emphasizes the importance of choosing the appropriate models to fit ellipsometric data accurately, with examples of the Cauchy and Lorentz models. Additionally, the Kramers–Kronig relations are introduced, illustrating the connection between real and imaginary components of optical constants. The review underscores the significance of ellipsometry as a non-destructive and versatile technique for material characterization across a wide range of applications. Full article

This study aims to provide the dairy industry with a direct control model focused on milk coagulation by using multifiber probes to determine parameters in the curding process, such as cutting time, at a lower cost. The main objective of the research is to confirm that a multifiber NIR light scattering probe can be used to predict the elastic modulus of curd during milk coagulation in cheese production. Two randomized complete block designs were used with a 3 × 3 factorial arrangement of three protein levels (3%, 3.5% and 4%) and three wavelengths (870 nm, 880 nm and 890 nm). Using a multifiber probe at a wavelength of 880 nm allowed obtaining a better optical response of the sensor during enzymatic milk coagulation than the 870 nm. It showed greater sensitivity to variations in the protein content of the milk and lower variation in the response. The multifiber probe at a wavelength of 880 nm generated a NIR light backscatter profile like those obtained with other systems. The results showed that the prediction model parameters had a variation as a function of the protein content, which opens the possibility of improving the prediction model’s performance substantially. Furthermore, the initial voltage obtained with the probe responded linearly to the different protein levels in milk. This fact would make it possible, at least theoretically, to estimate protein concentration with the same inline probe for G’ determination, facilitating the incorporation of a corrective protein factor in the prediction models using a single instrument. Full article

Recent studies have indicated that terahertz time-domain spectroscopy (THz-TDS) can stably and efficiently acquire output spectra using an affordable and compact multimode laser diode (MMLD) with delayed optical feedback as the light source. This research focused on a numerical analysis of the optimal conditions for employing an MMLD with delayed optical feedback (a chaotic oscillating laser diode) in THz-TDS utilizing multimode rate equations. The findings revealed that the intermittent chaotic output generated by the MMLD, characterized by concurrent picosecond pulse oscillations lasting several tens of picoseconds, proved to be highly effective for THz-TDS. By appropriately setting the amounts for the injection current and optical feedback and the delay time for the optical feedback, intermittent chaotic oscillation could be attained within a considerably broad parameter range. The generation of intermittent chaotic oscillations was confirmed by observing their characteristic asymmetric spectral shapes. Moreover, both the MMLD output spectrum and the THz-TDS output spectrum exhibited consistently stable shapes at the microsecond scale, demonstrating the attractor properties inherent in an MMLD with delayed optical feedback. Full article

We studied the painted decorations found during recent restoration work in the Alexander Palace in Tsarskoye Selo. Optical/laser spectroscopic methods were applied to obtain a characterization of the materials, pigments, and binders in use and, possibly, their degradation. We analyzed samples of the original Art Nouveau style decoration that was detached in 2019 during conservation work at the State Office of Emperor Nicholas II. A combination of Raman microscopy, infrared spectroscopy, and elemental analysis (obtained from the optical emission following laser plasma formation) allowed us to obtain detailed information on the materials used. The precious pigments of the artist’s green-blue palette and the binder used (drying oil) were identified. A mixture of blue (Prussian blue and ultramarine blue), white (lead white and barium white), and yellow (chrome yellow and zinc yellow) pigments determined the different blue hues used. The use of bronze paint in the dark blue area, which was identified as a brass powder applied with a drying oil as a binder, was also demonstrated. Full article