SynMut
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
Bioconductor version: Release (3.19)
There are increasing demands on designing virus mutants with specific dinucleotide or codon composition. This tool can take both dinucleotide preference and/or codon usage bias into account while designing mutants. It is a powerful tool for in silico designs of DNA sequence mutants.
Author: Haogao Gu [aut, cre], Leo L.M. Poon [led]
Maintainer: Haogao Gu <hggu at connect.hku.hk>
citation("SynMut")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SynMut")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SynMut")
SynMut: Designing Synonymous Mutants for DNA Sequences | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentalDesign, Preprocessing, SequenceMatching, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-2 |
Depends | |
Imports | seqinr, methods, Biostrings, stringr, BiocGenerics |
System Requirements | |
URL | https://github.com/Koohoko/SynMut |
Bug Reports | https://github.com/Koohoko/SynMut/issues |
See More
Suggests | BiocManager, knitr, rmarkdown, testthat, devtools, prettydoc, glue |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SynMut_1.20.0.tar.gz |
Windows Binary | SynMut_1.20.0.zip |
macOS Binary (x86_64) | SynMut_1.20.0.tgz |
macOS Binary (arm64) | SynMut_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SynMut |
Source Repository (Developer Access) | git clone [email protected]:packages/SynMut |
Bioc Package Browser | https://code.bioconductor.org/browse/SynMut/ |
Package Short Url | https://bioconductor.org/packages/SynMut/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |