| File:Pdbsum logo.gif | |
|---|---|
| Content | |
| Description | Overview of the structures contained within the Protein Data Bank. |
| Data types captured | Protein structures |
| Organism(s) | all |
| Contact | |
| Research center | EBI |
| Authors | Roman Laskowski |
| Primary Citation | PMID 9433130 |
| Access | |
| Website | PDBsumn home |
| Tools | |
| Miscellaneous | |
| Bookmarkable entities | yes |
PDBsum is database that provides an overview of the contents of each 3D macromolecular structure deposited in the Protein Data Bank.[1][2][3][4]
Each structure in the PDBsum database includes an image of structure, molecular components contained in the complex, enzyme reaction diagram if appropriate, Gene Ontology functional assignments, a 1D sequence annotated by Pfam and InterPro domain assignments, description of bound molecules and graphic showing interactions between protein and secondary structure, schematic diagrams of protein-protein interactions, analysis of clefts contained within the structure and links to external databases.
See also [link]
References [link]
- ^ Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM (December 1997). "PDBsum: a Web-based database of summaries and analyses of all PDB structures". Trends Biochem. Sci. 22 (12): 488–90. PMID 9433130.
- ^ Laskowski RA (January 2001). "PDBsum: summaries and analyses of PDB structures". Nucleic Acids Res. 29 (1): 221–2. DOI:10.1093/nar/29.1.221. PMC 29784. PMID 11125097. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=29784.
- ^ Laskowski RA, Chistyakov VV, Thornton JM (January 2005). "PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids". Nucleic Acids Res. 33 (Database issue): D266–8. DOI:10.1093/nar/gki001. PMC 539955. PMID 15608193. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=539955.
- ^ Laskowski RA (January 2009). "PDBsum new things". Nucleic Acids Res. 37 (Database issue): D355–9. DOI:10.1093/nar/gkn860. PMC 2686501. PMID 18996896. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2686501.
External links [link]
- Laskowski RA, Thornton JM. "PDBsum home page". European Bioinformatics Institute. https://www.ebi.ac.uk/pdbsum/.
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