In 1998 Figeľ left his parliamentary seat and was appointed State Secretary of the Ministry of Foreign Affairs. Unlike most of his colleagues in the European Commission, he never rose to a cabinet-level position, but led Slovakia's accession negotiations with the European Union until 2003. He also represented the Slovak government in the European Convention which drafted the European Constitution. He returned to the National Council in 2002 where he chaired its Foreign Affairs Committee, stepping down in 2004 to take up his Commission post.