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Answer: Package needs internet access
by
James W. MacDonald
67k
It's going to need internet access. When you switch to NCBI seqlevels, you are calling this function
```
.fetch_chrom_sizes_from_UCSC_d…
Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
by
Gordon Smyth
51k
The first coefficient in your linear model appears to be an intercept term. In this context, you should not be using `method="global"` beca…
Comment: Package needs internet access
by
James W. MacDonald
67k
It's not clear to me why (or that) `seqlevelsStyle` should be called on a `BSgenome` object. You will need to provide more code that preced…
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
by
James W. MacDonald
67k
The 'voom transformed counts' are just logCPM with a prior count of 0.5. The 'magic' of limma-voom is the weights that are computed and the…
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