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From: <cl...@br...> - 2014-03-28 00:33:27
|
Dear colleagues, Took a while to fix it here. I've chosen the qt package downloading and installing it manually together with the sip package as well as the pyqy4 package and qt-devel package. The pyqy4 configure process showed a dependency from the module "qmake" which I fixed with the install command: python configure.py -q /usr/lib64/qt4/bin/qmake -g Further I've updated the matplotlibrc file pointing the entry to: backend : QT4Agg. Numpy 1.8.1 and Matplotlib 1.3.1 is executing now the 3dScatter diagram, all working nicely, latest versions of Matplotlib and Numpy are running on the RedHat 6.4. Thanks Ben for your guidance and support. Problem solved. Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... ----- Forwarded by Claude Falbriard/Brazil/IBM on 27/03/2014 21:20 ----- From: Benjamin Root <ben...@ou...> To: falbriard <cl...@br...>, Cc: Matplotlib Users <mat...@li...> Date: 27/03/2014 17:16 Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source Sent by: ben...@gm... Claude, Just noticed your matplotlibrc file has "agg" listed for the backend. That usually happens when the build process for matplotlib does not find any development files for a particular backend to be available. See this page: http://matplotlib.org/faq/installing_faq.html#install-from-git Essentially, just having the "devel" packages for one or more of the various toolkits is sufficient. Once you have that installed, clean the build and rebuild. Cheers! Ben Root On Thu, Mar 27, 2014 at 4:08 PM, <cl...@br...> wrote: Dear Ben, I've also repeated the install using pip unistall and install of matplotlib, both completed successfully but the issue remains, no graphical display at the RedHat Linux, as well as very fast and silent exit from the program code. The source used for my test is the 3D Scatter Sample form the Gallery: from mpl_toolkits.mplot3d import Axes3D import numpy as np import matplotlib.pyplot as plt fig = plt.figure() ax = fig.gca(projection='3d') x = np.linspace(0, 1, 100) y = np.sin(x * 2 * np.pi) / 2 + 0.5 ax.plot(x, y, zs=0, zdir='z', label='zs=0, zdir=z') colors = ('r', 'g', 'b', 'k') for c in colors: x = np.random.sample(20) y = np.random.sample(20) ax.scatter(x, y, 0, zdir='y', c=c) ax.legend() ax.set_xlim3d(0, 1) ax.set_ylim3d(0, 1) ax.set_zlim3d(0, 1) plt.show() The maplotlibrc file: ### MATPLOTLIBRC FORMAT # This is a sample matplotlib configuration file - you can find a copy # of it on your system in # site-packages/matplotlib/mpl-data/matplotlibrc. If you edit it # there, please note that it will be overwritten in your next install. # If you want to keep a permanent local copy that will not be # overwritten, place it in HOME/.matplotlib/matplotlibrc (unix/linux # like systems) and C:\Documents and Settings\yourname\.matplotlib # (win32 systems). # # This file is best viewed in a editor which supports python mode # syntax highlighting. Blank lines, or lines starting with a comment # symbol, are ignored, as are trailing comments. Other lines must # have the format # key : val # optional comment # # Colors: for the color values below, you can either use - a # matplotlib color string, such as r, k, or b - an rgb tuple, such as # (1.0, 0.5, 0.0) - a hex string, such as ff00ff or #ff00ff - a scalar # grayscale intensity such as 0.75 - a legal html color name, eg red, # blue, darkslategray #### CONFIGURATION BEGINS HERE # the default backend; one of GTK GTKAgg GTKCairo GTK3Agg GTK3Cairo # CocoaAgg MacOSX Qt4Agg TkAgg WX WXAgg Agg Cairo GDK PS PDF SVG # Template # You can also deploy your own backend outside of matplotlib by # referring to the module name (which must be in the PYTHONPATH) as # 'module://my_backend' backend : agg # If you are using the Qt4Agg backend, you can choose here # to use the PyQt4 bindings or the newer PySide bindings to # the underlying Qt4 toolkit. #backend.qt4 : PyQt4 # PyQt4 | PySide # Note that this can be overridden by the environment variable # QT_API used by Enthought Tool Suite (ETS); valid values are # "pyqt" and "pyside". The "pyqt" setting has the side effect of # forcing the use of Version 2 API for QString and QVariant. # The port to use for the web server in the WebAgg backend. # webagg.port : 8888 # If webagg.port is unavailable, a number of other random ports will # be tried until one that is available is found. # webagg.port_retries : 50 # When True, open the webbrowser to the plot that is shown # webagg.open_in_browser : True # if you are running pyplot inside a GUI and your backend choice # conflicts, we will automatically try to find a compatible one for # you if backend_fallback is True #backend_fallback: True #interactive : False #toolbar : toolbar2 # None | toolbar2 ("classic" is deprecated) #timezone : UTC # a pytz timezone string, eg US/Central or Europe/Paris # Where your matplotlib data lives if you installed to a non-default # location. This is where the matplotlib fonts, bitmaps, etc reside #datapath : /home/jdhunter/mpldata ### LINES # See http://matplotlib.org/api/artist_api.html#module-matplotlib.lines for more # information on line properties. #lines.linewidth : 1.0 # line width in points #lines.linestyle : - # solid line #lines.color : blue # has no affect on plot(); see axes.color_cycle #lines.marker : None # the default marker #lines.markeredgewidth : 0.5 # the line width around the marker symbol #lines.markersize : 6 # markersize, in points #lines.dash_joinstyle : miter # miter|round|bevel #lines.dash_capstyle : butt # butt|round|projecting #lines.solid_joinstyle : miter # miter|round|bevel #lines.solid_capstyle : projecting # butt|round|projecting #lines.antialiased : True # render lines in antialised (no jaggies) ### PATCHES # Patches are graphical objects that fill 2D space, like polygons or # circles. See # http://matplotlib.org/api/artist_api.html#module-matplotlib.patches # information on patch properties #patch.linewidth : 1.0 # edge width in points #patch.facecolor : blue #patch.edgecolor : black #patch.antialiased : True # render patches in antialised (no jaggies) ### FONT # # font properties used by text.Text. See # http://matplotlib.org/api/font_manager_api.html for more # information on font properties. The 6 font properties used for font # matching are given below with their default values. # # The font.family property has five values: 'serif' (e.g., Times), # 'sans-serif' (e.g., Helvetica), 'cursive' (e.g., Zapf-Chancery), # 'fantasy' (e.g., Western), and 'monospace' (e.g., Courier). Each of # these font families has a default list of font names in decreasing # order of priority associated with them. When text.usetex is False, # font.family may also be one or more concrete font names. # # The font.style property has three values: normal (or roman), italic # or oblique. The oblique style will be used for italic, if it is not # present. # # The font.variant property has two values: normal or small-caps. For # TrueType fonts, which are scalable fonts, small-caps is equivalent # to using a font size of 'smaller', or about 83% of the current font # size. # # The font.weight property has effectively 13 values: normal, bold, # bolder, lighter, 100, 200, 300, ..., 900. Normal is the same as # 400, and bold is 700. bolder and lighter are relative values with # respect to the current weight. # # The font.stretch property has 11 values: ultra-condensed, # extra-condensed, condensed, semi-condensed, normal, semi-expanded, # expanded, extra-expanded, ultra-expanded, wider, and narrower. This # property is not currently implemented. # # The font.size property is the default font size for text, given in pts. # 12pt is the standard value. # #font.family : sans-serif #font.style : normal #font.variant : normal #font.weight : medium #font.stretch : normal # note that font.size controls default text sizes. To configure # special text sizes tick labels, axes, labels, title, etc, see the rc # settings for axes and ticks. Special text sizes can be defined # relative to font.size, using the following values: xx-small, x-small, # small, medium, large, x-large, xx-large, larger, or smaller #font.size : 12.0 #font.serif : Bitstream Vera Serif, New Century Schoolbook, Century Schoolbook L, Utopia, ITC Bookman, Bookman, Nimbus Roman No9 L, Times New Roman, Times, Palatino, Charter, serif #font.sans-serif : Bitstream Vera Sans, Lucida Grande, Verdana, Geneva, Lucid, Arial, Helvetica, Avant Garde, sans-serif #font.cursive : Apple Chancery, Textile, Zapf Chancery, Sand, cursive #font.fantasy : Comic Sans MS, Chicago, Charcoal, Impact, Western, fantasy #font.monospace : Bitstream Vera Sans Mono, Andale Mono, Nimbus Mono L, Courier New, Courier, Fixed, Terminal, monospace ### TEXT # text properties used by text.Text. See # http://matplotlib.org/api/artist_api.html#module-matplotlib.text for more # information on text properties #text.color : black ### LaTeX customizations. See http://www.scipy.org/Wiki/Cookbook/Matplotlib/UsingTex #text.usetex : False # use latex for all text handling. The following fonts # are supported through the usual rc parameter settings: # new century schoolbook, bookman, times, palatino, # zapf chancery, charter, serif, sans-serif, helvetica, # avant garde, courier, monospace, computer modern roman, # computer modern sans serif, computer modern typewriter # If another font is desired which can loaded using the # LaTeX \usepackage command, please inquire at the # matplotlib mailing list #text.latex.unicode : False # use "ucs" and "inputenc" LaTeX packages for handling # unicode strings. #text.latex.preamble : # IMPROPER USE OF THIS FEATURE WILL LEAD TO LATEX FAILURES # AND IS THEREFORE UNSUPPORTED. PLEASE DO NOT ASK FOR HELP # IF THIS FEATURE DOES NOT DO WHAT YOU EXPECT IT TO. # preamble is a comma separated list of LaTeX statements # that are included in the LaTeX document preamble. # An example: # text.latex.preamble : \usepackage{bm},\usepackage{euler} # The following packages are always loaded with usetex, so # beware of package collisions: color, geometry, graphicx, # type1cm, textcomp. Adobe Postscript (PSSNFS) font packages # may also be loaded, depending on your font settings #text.dvipnghack : None # some versions of dvipng don't handle alpha # channel properly. Use True to correct # and flush ~/.matplotlib/tex.cache # before testing and False to force # correction off. None will try and # guess based on your dvipng version #text.hinting : 'auto' # May be one of the following: # 'none': Perform no hinting # 'auto': Use freetype's autohinter # 'native': Use the hinting information in the # font file, if available, and if your # freetype library supports it # 'either': Use the native hinting information, # or the autohinter if none is available. # For backward compatibility, this value may also be # True === 'auto' or False === 'none'. #text.hinting_factor : 8 # Specifies the amount of softness for hinting in the # horizontal direction. A value of 1 will hint to full # pixels. A value of 2 will hint to half pixels etc. #text.antialiased : True # If True (default), the text will be antialiased. # This only affects the Agg backend. # The following settings allow you to select the fonts in math mode. # They map from a TeX font name to a fontconfig font pattern. # These settings are only used if mathtext.fontset is 'custom'. # Note that this "custom" mode is unsupported and may go away in the # future. #mathtext.cal : cursive #mathtext.rm : serif #mathtext.tt : monospace #mathtext.it : serif:italic #mathtext.bf : serif:bold #mathtext.sf : sans #mathtext.fontset : cm # Should be 'cm' (Computer Modern), 'stix', # 'stixsans' or 'custom' #mathtext.fallback_to_cm : True # When True, use symbols from the Computer Modern # fonts when a symbol can not be found in one of # the custom math fonts. #mathtext.default : it # The default font to use for math. # Can be any of the LaTeX font names, including # the special name "regular" for the same font # used in regular text. ### AXES # default face and edge color, default tick sizes, # default fontsizes for ticklabels, and so on. See # http://matplotlib.org/api/axes_api.html#module-matplotlib.axes #axes.hold : True # whether to clear the axes by default on #axes.facecolor : white # axes background color #axes.edgecolor : black # axes edge color #axes.linewidth : 1.0 # edge linewidth #axes.grid : False # display grid or not #axes.titlesize : large # fontsize of the axes title #axes.labelsize : medium # fontsize of the x any y labels #axes.labelweight : normal # weight of the x and y labels #axes.labelcolor : black #axes.axisbelow : False # whether axis gridlines and ticks are below # the axes elements (lines, text, etc) #axes.formatter.limits : -7, 7 # use scientific notation if log10 # of the axis range is smaller than the # first or larger than the second #axes.formatter.use_locale : False # When True, format tick labels # according to the user's locale. # For example, use ',' as a decimal # separator in the fr_FR locale. #axes.formatter.use_mathtext : False # When True, use mathtext for scientific # notation. #axes.unicode_minus : True # use unicode for the minus symbol # rather than hyphen. See # http://en.wikipedia.org/wiki/Plus_and_minus_signs#Character_codes #axes.color_cycle : b, g, r, c, m, y, k # color cycle for plot lines # as list of string colorspecs: # single letter, long name, or # web-style hex #axes.xmargin : 0 # x margin. See `axes.Axes.margins` #axes.ymargin : 0 # y margin See `axes.Axes.margins` #polaraxes.grid : True # display grid on polar axes #axes3d.grid : True # display grid on 3d axes ### TICKS # see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick #xtick.major.size : 4 # major tick size in points #xtick.minor.size : 2 # minor tick size in points #xtick.major.width : 0.5 # major tick width in points #xtick.minor.width : 0.5 # minor tick width in points #xtick.major.pad : 4 # distance to major tick label in points #xtick.minor.pad : 4 # distance to the minor tick label in points #xtick.color : k # color of the tick labels #xtick.labelsize : medium # fontsize of the tick labels #xtick.direction : in # direction: in, out, or inout #ytick.major.size : 4 # major tick size in points #ytick.minor.size : 2 # minor tick size in points #ytick.major.width : 0.5 # major tick width in points #ytick.minor.width : 0.5 # minor tick width in points #ytick.major.pad : 4 # distance to major tick label in points #ytick.minor.pad : 4 # distance to the minor tick label in points #ytick.color : k # color of the tick labels #ytick.labelsize : medium # fontsize of the tick labels #ytick.direction : in # direction: in, out, or inout ### GRIDS #grid.color : black # grid color #grid.linestyle : : # dotted #grid.linewidth : 0.5 # in points #grid.alpha : 1.0 # transparency, between 0.0 and 1.0 ### Legend #legend.fancybox : False # if True, use a rounded box for the # legend, else a rectangle #legend.isaxes : True #legend.numpoints : 2 # the number of points in the legend line #legend.fontsize : large #legend.borderpad : 0.5 # border whitespace in fontsize units #legend.markerscale : 1.0 # the relative size of legend markers vs. original # the following dimensions are in axes coords #legend.labelspacing : 0.5 # the vertical space between the legend entries in fraction of fontsize #legend.handlelength : 2. # the length of the legend lines in fraction of fontsize #legend.handleheight : 0.7 # the height of the legend handle in fraction of fontsize #legend.handletextpad : 0.8 # the space between the legend line and legend text in fraction of fontsize #legend.borderaxespad : 0.5 # the border between the axes and legend edge in fraction of fontsize #legend.columnspacing : 2. # the border between the axes and legend edge in fraction of fontsize #legend.shadow : False #legend.frameon : True # whether or not to draw a frame around legend #legend.scatterpoints : 3 # number of scatter points ### FIGURE # See http://matplotlib.org/api/figure_api.html#matplotlib.figure.Figure #figure.figsize : 8, 6 # figure size in inches #figure.dpi : 80 # figure dots per inch #figure.facecolor : 0.75 # figure facecolor; 0.75 is scalar gray #figure.edgecolor : white # figure edgecolor #figure.autolayout : False # When True, automatically adjust subplot # parameters to make the plot fit the figure #figure.max_open_warning : 20 # The maximum number of figures to open through # the pyplot interface before emitting a warning. # If less than one this feature is disabled. # The figure subplot parameters. All dimensions are a fraction of the # figure width or height #figure.subplot.left : 0.125 # the left side of the subplots of the figure #figure.subplot.right : 0.9 # the right side of the subplots of the figure #figure.subplot.bottom : 0.1 # the bottom of the subplots of the figure #figure.subplot.top : 0.9 # the top of the subplots of the figure #figure.subplot.wspace : 0.2 # the amount of width reserved for blank space between subplots #figure.subplot.hspace : 0.2 # the amount of height reserved for white space between subplots ### IMAGES #image.aspect : equal # equal | auto | a number #image.interpolation : bilinear # see help(imshow) for options #image.cmap : jet # gray | jet etc... #image.lut : 256 # the size of the colormap lookup table #image.origin : upper # lower | upper #image.resample : False ### CONTOUR PLOTS #contour.negative_linestyle : dashed # dashed | solid ### Agg rendering ### Warning: experimental, 2008/10/10 #agg.path.chunksize : 0 # 0 to disable; values in the range # 10000 to 100000 can improve speed slightly # and prevent an Agg rendering failure # when plotting very large data sets, # especially if they are very gappy. # It may cause minor artifacts, though. # A value of 20000 is probably a good # starting point. ### SAVING FIGURES #path.simplify : True # When True, simplify paths by removing "invisible" # points to reduce file size and increase rendering # speed #path.simplify_threshold : 0.1 # The threshold of similarity below which # vertices will be removed in the simplification # process #path.snap : True # When True, rectilinear axis-aligned paths will be snapped to # the nearest pixel when certain criteria are met. When False, # paths will never be snapped. #path.sketch : None # May be none, or a 3-tuple of the form (scale, length, # randomness). # *scale* is the amplitude of the wiggle # perpendicular to the line (in pixels). *length* # is the length of the wiggle along the line (in # pixels). *randomness* is the factor by which # the length is randomly scaled. # the default savefig params can be different from the display params # e.g., you may want a higher resolution, or to make the figure # background white #savefig.dpi : 100 # figure dots per inch #savefig.facecolor : white # figure facecolor when saving #savefig.edgecolor : white # figure edgecolor when saving #savefig.format : png # png, ps, pdf, svg #savefig.bbox : standard # 'tight' or 'standard'. #savefig.pad_inches : 0.1 # Padding to be used when bbox is set to 'tight' #savefig.jpeg_quality: 95 # when a jpeg is saved, the default quality parameter. #savefig.directory : ~ # default directory in savefig dialog box, # leave empty to always use current working directory # tk backend params #tk.window_focus : False # Maintain shell focus for TkAgg # ps backend params #ps.papersize : letter # auto, letter, legal, ledger, A0-A10, B0-B10 #ps.useafm : False # use of afm fonts, results in small files #ps.usedistiller : False # can be: None, ghostscript or xpdf # Experimental: may produce smaller files. # xpdf intended for production of publication quality files, # but requires ghostscript, xpdf and ps2eps #ps.distiller.res : 6000 # dpi #ps.fonttype : 3 # Output Type 3 (Type3) or Type 42 (TrueType) # pdf backend params #pdf.compression : 6 # integer from 0 to 9 # 0 disables compression (good for debugging) #pdf.fonttype : 3 # Output Type 3 (Type3) or Type 42 (TrueType) # svg backend params #svg.image_inline : True # write raster image data directly into the svg file #svg.image_noscale : False # suppress scaling of raster data embedded in SVG #svg.fonttype : 'path' # How to handle SVG fonts: # 'none': Assume fonts are installed on the machine where the SVG will be viewed. # 'path': Embed characters as paths -- supported by most SVG renderers # 'svgfont': Embed characters as SVG fonts -- supported only by Chrome, # Opera and Safari # docstring params #docstring.hardcopy = False # set this when you want to generate hardcopy docstring # Set the verbose flags. This controls how much information # matplotlib gives you at runtime and where it goes. The verbosity # levels are: silent, helpful, debug, debug-annoying. Any level is # inclusive of all the levels below it. If your setting is "debug", # you'll get all the debug and helpful messages. When submitting # problems to the mailing-list, please set verbose to "helpful" or "debug" # and paste the output into your report. # # The "fileo" gives the destination for any calls to verbose.report. # These objects can a filename, or a filehandle like sys.stdout. # # You can override the rc default verbosity from the command line by # giving the flags --verbose-LEVEL where LEVEL is one of the legal # levels, eg --verbose-helpful. # # You can access the verbose instance in your code # from matplotlib import verbose. #verbose.level : silent # one of silent, helpful, debug, debug-annoying #verbose.fileo : sys.stdout # a log filename, sys.stdout or sys.stderr # Event keys to interact with figures/plots via keyboard. # Customize these settings according to your needs. # Leave the field(s) empty if you don't need a key-map. (i.e., fullscreen : '') #keymap.fullscreen : f # toggling #keymap.home : h, r, home # home or reset mnemonic #keymap.back : left, c, backspace # forward / backward keys to enable #keymap.forward : right, v # left handed quick navigation #keymap.pan : p # pan mnemonic #keymap.zoom : o # zoom mnemonic #keymap.save : s # saving current figure #keymap.quit : ctrl+w, cmd+w # close the current figure #keymap.grid : g # switching on/off a grid in current axes #keymap.yscale : l # toggle scaling of y-axes ('log'/'linear') #keymap.xscale : L, k # toggle scaling of x-axes ('log'/'linear') #keymap.all_axes : a # enable all axes # Control location of examples data files #examples.directory : '' # directory to look in for custom installation ###ANIMATION settings #animation.writer : ffmpeg # MovieWriter 'backend' to use #animation.codec : mp4 # Codec to use for writing movie #animation.bitrate: -1 # Controls size/quality tradeoff for movie. # -1 implies let utility auto-determine #animation.frame_format: 'png' # Controls frame format used by temp files #animation.ffmpeg_path: 'ffmpeg' # Path to ffmpeg binary. Without full path # $PATH is searched #animation.ffmpeg_args: '' # Additional arguments to pass to ffmpeg #animation.avconv_path: 'avconv' # Path to avconv binary. Without full path # $PATH is searched #animation.avconv_args: '' # Additional arguments to pass to avconv #animation.mencoder_path: 'mencoder' # Path to mencoder binary. Without full path # $PATH is searched #animation.mencoder_args: '' # Additional arguments to pass to mencoder Hope this helps to isolate the error. Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... From: Benjamin Root <ben...@ou...> To: falbriard <cl...@br...>, Matplotlib Users < mat...@li...>, Date: 27/03/2014 16:20 Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source Sent by: ben...@gm... Claude, it would be helpful to know exactly what code you executed. Some example code assumes interactive modes, while others simply save files without ever showing them to the screen. Also, please include a copy of your matplotlibrc file. Ben Root On Thu, Mar 27, 2014 at 1:47 PM, <cl...@br...> wrote: Dear Ben, The execution of any of the Matplotlib sample code start quickly and and exits immediately with no error message displayed at the screen. The process runs instantly, so there is no wait in the process. Looks more like a missing setup option, matplotlib does not find a valid graphical screen display environment. What do you think is causing this error in RedHat Linux? Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... From: Benjamin Root <ben...@ou...> To: falbriard <cl...@br...>, Cc: Matplotlib Users <mat...@li...> Date: 27/03/2014 14:32 Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source Sent by: ben...@gm... How long did you wait? Do allow approximately one minute for the first execution to allow for the font.cache to be built. It can appear that the process has "hung" because it is waiting for "fc-list" subprocess to complete. Cheers! Ben Root ------------------------------------------------------------------------------ _______________________________________________ Matplotlib-users mailing list Mat...@li... https://lists.sourceforge.net/lists/listinfo/matplotlib-users |
From: Benjamin R. <ben...@ou...> - 2014-03-27 20:16:46
|
Claude, Just noticed your matplotlibrc file has "agg" listed for the backend. That usually happens when the build process for matplotlib does not find any development files for a particular backend to be available. See this page: http://matplotlib.org/faq/installing_faq.html#install-from-git Essentially, just having the "devel" packages for one or more of the various toolkits is sufficient. Once you have that installed, clean the build and rebuild. Cheers! Ben Root On Thu, Mar 27, 2014 at 4:08 PM, <cl...@br...> wrote: > Dear Ben, > > I've also repeated the install using pip unistall and install of > matplotlib, both completed successfully but the issue remains, no graphical > display at the RedHat Linux, as well as very fast and silent exit from the > program code. > > > *The source used for my test is the 3D Scatter Sample form the Gallery:* > > from mpl_toolkits.mplot3d import Axes3D > import numpy as np > import matplotlib.pyplot as plt > > fig = plt.figure() > ax = fig.gca(projection='3d') > > x = np.linspace(0, 1, 100) > y = np.sin(x * 2 * np.pi) / 2 + 0.5 > ax.plot(x, y, zs=0, zdir='z', label='zs=0, zdir=z') > > colors = ('r', 'g', 'b', 'k') > for c in colors: > x = np.random.sample(20) > y = np.random.sample(20) > ax.scatter(x, y, 0, zdir='y', c=c) > > ax.legend() > ax.set_xlim3d(0, 1) > ax.set_ylim3d(0, 1) > ax.set_zlim3d(0, 1) > > plt.show() > > > *The maplotlibrc file: * > > ### MATPLOTLIBRC FORMAT > > # This is a sample matplotlib configuration file - you can find a copy > # of it on your system in > # site-packages/matplotlib/mpl-data/matplotlibrc. If you edit it > # there, please note that it will be overwritten in your next install. > # If you want to keep a permanent local copy that will not be > # overwritten, place it in HOME/.matplotlib/matplotlibrc (unix/linux > # like systems) and C:\Documents and Settings\yourname\.matplotlib > # (win32 systems). > # > # This file is best viewed in a editor which supports python mode > # syntax highlighting. Blank lines, or lines starting with a comment > # symbol, are ignored, as are trailing comments. Other lines must > # have the format > # key : val # optional comment > # > # Colors: for the color values below, you can either use - a > # matplotlib color string, such as r, k, or b - an rgb tuple, such as > # (1.0, 0.5, 0.0) - a hex string, such as ff00ff or #ff00ff - a scalar > # grayscale intensity such as 0.75 - a legal html color name, eg red, > # blue, darkslategray > > #### CONFIGURATION BEGINS HERE > > # the default backend; one of GTK GTKAgg GTKCairo GTK3Agg GTK3Cairo > # CocoaAgg MacOSX Qt4Agg TkAgg WX WXAgg Agg Cairo GDK PS PDF SVG > # Template > # You can also deploy your own backend outside of matplotlib by > # referring to the module name (which must be in the PYTHONPATH) as > # 'module://my_backend' > backend : agg > > # If you are using the Qt4Agg backend, you can choose here > # to use the PyQt4 bindings or the newer PySide bindings to > # the underlying Qt4 toolkit. > #backend.qt4 : PyQt4 # PyQt4 | PySide > > # Note that this can be overridden by the environment variable > # QT_API used by Enthought Tool Suite (ETS); valid values are > # "pyqt" and "pyside". The "pyqt" setting has the side effect of > # forcing the use of Version 2 API for QString and QVariant. > > # The port to use for the web server in the WebAgg backend. > # webagg.port : 8888 > > # If webagg.port is unavailable, a number of other random ports will > # be tried until one that is available is found. > # webagg.port_retries : 50 > > # When True, open the webbrowser to the plot that is shown > # webagg.open_in_browser : True > > # if you are running pyplot inside a GUI and your backend choice > # conflicts, we will automatically try to find a compatible one for > # you if backend_fallback is True > #backend_fallback: True > > #interactive : False > #toolbar : toolbar2 # None | toolbar2 ("classic" is deprecated) > #timezone : UTC # a pytz timezone string, eg US/Central or > Europe/Paris > > # Where your matplotlib data lives if you installed to a non-default > # location. This is where the matplotlib fonts, bitmaps, etc reside > #datapath : /home/jdhunter/mpldata > > > ### LINES > # See http://matplotlib.org/api/artist_api.html#module-matplotlib.linesfor more > # information on line properties. > #lines.linewidth : 1.0 # line width in points > #lines.linestyle : - # solid line > #lines.color : blue # has no affect on plot(); see > axes.color_cycle > #lines.marker : None # the default marker > #lines.markeredgewidth : 0.5 # the line width around the marker symbol > #lines.markersize : 6 # markersize, in points > #lines.dash_joinstyle : miter # miter|round|bevel > #lines.dash_capstyle : butt # butt|round|projecting > #lines.solid_joinstyle : miter # miter|round|bevel > #lines.solid_capstyle : projecting # butt|round|projecting > #lines.antialiased : True # render lines in antialised (no jaggies) > > ### PATCHES > # Patches are graphical objects that fill 2D space, like polygons or > # circles. See > # http://matplotlib.org/api/artist_api.html#module-matplotlib.patches > # information on patch properties > #patch.linewidth : 1.0 # edge width in points > #patch.facecolor : blue > #patch.edgecolor : black > #patch.antialiased : True # render patches in antialised (no > jaggies) > > ### FONT > # > # font properties used by text.Text. See > # http://matplotlib.org/api/font_manager_api.html for more > # information on font properties. The 6 font properties used for font > # matching are given below with their default values. > # > # The font.family property has five values: 'serif' (e.g., Times), > # 'sans-serif' (e.g., Helvetica), 'cursive' (e.g., Zapf-Chancery), > # 'fantasy' (e.g., Western), and 'monospace' (e.g., Courier). Each of > # these font families has a default list of font names in decreasing > # order of priority associated with them. When text.usetex is False, > # font.family may also be one or more concrete font names. > # > # The font.style property has three values: normal (or roman), italic > # or oblique. The oblique style will be used for italic, if it is not > # present. > # > # The font.variant property has two values: normal or small-caps. For > # TrueType fonts, which are scalable fonts, small-caps is equivalent > # to using a font size of 'smaller', or about 83% of the current font > # size. > # > # The font.weight property has effectively 13 values: normal, bold, > # bolder, lighter, 100, 200, 300, ..., 900. Normal is the same as > # 400, and bold is 700. bolder and lighter are relative values with > # respect to the current weight. > # > # The font.stretch property has 11 values: ultra-condensed, > # extra-condensed, condensed, semi-condensed, normal, semi-expanded, > # expanded, extra-expanded, ultra-expanded, wider, and narrower. This > # property is not currently implemented. > # > # The font.size property is the default font size for text, given in pts. > # 12pt is the standard value. > # > #font.family : sans-serif > #font.style : normal > #font.variant : normal > #font.weight : medium > #font.stretch : normal > # note that font.size controls default text sizes. To configure > # special text sizes tick labels, axes, labels, title, etc, see the rc > # settings for axes and ticks. Special text sizes can be defined > # relative to font.size, using the following values: xx-small, x-small, > # small, medium, large, x-large, xx-large, larger, or smaller > #font.size : 12.0 > #font.serif : Bitstream Vera Serif, New Century Schoolbook, > Century Schoolbook L, Utopia, ITC Bookman, Bookman, Nimbus Roman No9 L, > Times New Roman, Times, Palatino, Charter, serif > #font.sans-serif : Bitstream Vera Sans, Lucida Grande, Verdana, > Geneva, Lucid, Arial, Helvetica, Avant Garde, sans-serif > #font.cursive : Apple Chancery, Textile, Zapf Chancery, Sand, > cursive > #font.fantasy : Comic Sans MS, Chicago, Charcoal, Impact, Western, > fantasy > #font.monospace : Bitstream Vera Sans Mono, Andale Mono, Nimbus Mono > L, Courier New, Courier, Fixed, Terminal, monospace > > ### TEXT > # text properties used by text.Text. See > # http://matplotlib.org/api/artist_api.html#module-matplotlib.text for > more > # information on text properties > > #text.color : black > > ### LaTeX customizations. See > http://www.scipy.org/Wiki/Cookbook/Matplotlib/UsingTex > #text.usetex : False # use latex for all text handling. The > following fonts > # are supported through the usual rc > parameter settings: > # new century schoolbook, bookman, times, > palatino, > # zapf chancery, charter, serif, sans-serif, > helvetica, > # avant garde, courier, monospace, computer > modern roman, > # computer modern sans serif, computer > modern typewriter > # If another font is desired which can > loaded using the > # LaTeX \usepackage command, please inquire > at the > # matplotlib mailing list > #text.latex.unicode : False # use "ucs" and "inputenc" LaTeX packages for > handling > # unicode strings. > #text.latex.preamble : # IMPROPER USE OF THIS FEATURE WILL LEAD TO LATEX > FAILURES > # AND IS THEREFORE UNSUPPORTED. PLEASE DO NOT > ASK FOR HELP > # IF THIS FEATURE DOES NOT DO WHAT YOU EXPECT > IT TO. > # preamble is a comma separated list of LaTeX > statements > # that are included in the LaTeX document > preamble. > # An example: > # text.latex.preamble : > \usepackage{bm},\usepackage{euler} > # The following packages are always loaded > with usetex, so > # beware of package collisions: color, > geometry, graphicx, > # type1cm, textcomp. Adobe Postscript (PSSNFS) > font packages > # may also be loaded, depending on your font > settings > > #text.dvipnghack : None # some versions of dvipng don't handle alpha > # channel properly. Use True to correct > # and flush ~/.matplotlib/tex.cache > # before testing and False to force > # correction off. None will try and > # guess based on your dvipng version > > #text.hinting : 'auto' # May be one of the following: > # 'none': Perform no hinting > # 'auto': Use freetype's autohinter > # 'native': Use the hinting information in the > # font file, if available, and if your > # freetype library supports it > # 'either': Use the native hinting information, > # or the autohinter if none is > available. > # For backward compatibility, this value may also be > # True === 'auto' or False === 'none'. > #text.hinting_factor : 8 # Specifies the amount of softness for hinting in > the > # horizontal direction. A value of 1 will hint > to full > # pixels. A value of 2 will hint to half pixels > etc. > > #text.antialiased : True # If True (default), the text will be antialiased. > # This only affects the Agg backend. > > # The following settings allow you to select the fonts in math mode. > # They map from a TeX font name to a fontconfig font pattern. > # These settings are only used if mathtext.fontset is 'custom'. > # Note that this "custom" mode is unsupported and may go away in the > # future. > #mathtext.cal : cursive > #mathtext.rm : serif > #mathtext.tt : monospace > #mathtext.it : serif:italic > #mathtext.bf : serif:bold > #mathtext.sf : sans > #mathtext.fontset : cm # Should be 'cm' (Computer Modern), 'stix', > # 'stixsans' or 'custom' > #mathtext.fallback_to_cm : True # When True, use symbols from the > Computer Modern > # fonts when a symbol can not be found in > one of > # the custom math fonts. > > #mathtext.default : it # The default font to use for math. > # Can be any of the LaTeX font names, including > # the special name "regular" for the same font > # used in regular text. > > ### AXES > # default face and edge color, default tick sizes, > # default fontsizes for ticklabels, and so on. See > # http://matplotlib.org/api/axes_api.html#module-matplotlib.axes > #axes.hold : True # whether to clear the axes by default on > #axes.facecolor : white # axes background color > #axes.edgecolor : black # axes edge color > #axes.linewidth : 1.0 # edge linewidth > #axes.grid : False # display grid or not > #axes.titlesize : large # fontsize of the axes title > #axes.labelsize : medium # fontsize of the x any y labels > #axes.labelweight : normal # weight of the x and y labels > #axes.labelcolor : black > #axes.axisbelow : False # whether axis gridlines and ticks are below > # the axes elements (lines, text, etc) > #axes.formatter.limits : -7, 7 # use scientific notation if log10 > # of the axis range is smaller than the > # first or larger than the second > #axes.formatter.use_locale : False # When True, format tick labels > # according to the user's locale. > # For example, use ',' as a decimal > # separator in the fr_FR locale. > #axes.formatter.use_mathtext : False # When True, use mathtext for > scientific > # notation. > #axes.unicode_minus : True # use unicode for the minus symbol > # rather than hyphen. See > # > http://en.wikipedia.org/wiki/Plus_and_minus_signs#Character_codes > #axes.color_cycle : b, g, r, c, m, y, k # color cycle for plot lines > # as list of string colorspecs: > # single letter, long name, or > # web-style hex > #axes.xmargin : 0 # x margin. See `axes.Axes.margins` > #axes.ymargin : 0 # y margin See `axes.Axes.margins` > > #polaraxes.grid : True # display grid on polar axes > #axes3d.grid : True # display grid on 3d axes > > ### TICKS > # see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick > #xtick.major.size : 4 # major tick size in points > #xtick.minor.size : 2 # minor tick size in points > #xtick.major.width : 0.5 # major tick width in points > #xtick.minor.width : 0.5 # minor tick width in points > #xtick.major.pad : 4 # distance to major tick label in points > #xtick.minor.pad : 4 # distance to the minor tick label in points > #xtick.color : k # color of the tick labels > #xtick.labelsize : medium # fontsize of the tick labels > #xtick.direction : in # direction: in, out, or inout > > #ytick.major.size : 4 # major tick size in points > #ytick.minor.size : 2 # minor tick size in points > #ytick.major.width : 0.5 # major tick width in points > #ytick.minor.width : 0.5 # minor tick width in points > #ytick.major.pad : 4 # distance to major tick label in points > #ytick.minor.pad : 4 # distance to the minor tick label in points > #ytick.color : k # color of the tick labels > #ytick.labelsize : medium # fontsize of the tick labels > #ytick.direction : in # direction: in, out, or inout > > > ### GRIDS > #grid.color : black # grid color > #grid.linestyle : : # dotted > #grid.linewidth : 0.5 # in points > #grid.alpha : 1.0 # transparency, between 0.0 and 1.0 > > ### Legend > #legend.fancybox : False # if True, use a rounded box for the > # legend, else a rectangle > #legend.isaxes : True > #legend.numpoints : 2 # the number of points in the legend line > #legend.fontsize : large > #legend.borderpad : 0.5 # border whitespace in fontsize units > #legend.markerscale : 1.0 # the relative size of legend markers vs. > original > # the following dimensions are in axes coords > #legend.labelspacing : 0.5 # the vertical space between the legend > entries in fraction of fontsize > #legend.handlelength : 2. # the length of the legend lines in > fraction of fontsize > #legend.handleheight : 0.7 # the height of the legend handle in > fraction of fontsize > #legend.handletextpad : 0.8 # the space between the legend line and > legend text in fraction of fontsize > #legend.borderaxespad : 0.5 # the border between the axes and legend > edge in fraction of fontsize > #legend.columnspacing : 2. # the border between the axes and legend > edge in fraction of fontsize > #legend.shadow : False > #legend.frameon : True # whether or not to draw a frame around > legend > #legend.scatterpoints : 3 # number of scatter points > > ### FIGURE > # See http://matplotlib.org/api/figure_api.html#matplotlib.figure.Figure > #figure.figsize : 8, 6 # figure size in inches > #figure.dpi : 80 # figure dots per inch > #figure.facecolor : 0.75 # figure facecolor; 0.75 is scalar gray > #figure.edgecolor : white # figure edgecolor > #figure.autolayout : False # When True, automatically adjust subplot > # parameters to make the plot fit the figure > #figure.max_open_warning : 20 # The maximum number of figures to open > through > # the pyplot interface before emitting a > warning. > # If less than one this feature is disabled. > > # The figure subplot parameters. All dimensions are a fraction of the > # figure width or height > #figure.subplot.left : 0.125 # the left side of the subplots of the > figure > #figure.subplot.right : 0.9 # the right side of the subplots of the > figure > #figure.subplot.bottom : 0.1 # the bottom of the subplots of the figure > #figure.subplot.top : 0.9 # the top of the subplots of the figure > #figure.subplot.wspace : 0.2 # the amount of width reserved for blank > space between subplots > #figure.subplot.hspace : 0.2 # the amount of height reserved for white > space between subplots > > ### IMAGES > #image.aspect : equal # equal | auto | a number > #image.interpolation : bilinear # see help(imshow) for options > #image.cmap : jet # gray | jet etc... > #image.lut : 256 # the size of the colormap lookup table > #image.origin : upper # lower | upper > #image.resample : False > > ### CONTOUR PLOTS > #contour.negative_linestyle : dashed # dashed | solid > > ### Agg rendering > ### Warning: experimental, 2008/10/10 > #agg.path.chunksize : 0 # 0 to disable; values in the range > # 10000 to 100000 can improve speed > slightly > # and prevent an Agg rendering failure > # when plotting very large data sets, > # especially if they are very gappy. > # It may cause minor artifacts, though. > # A value of 20000 is probably a good > # starting point. > ### SAVING FIGURES > #path.simplify : True # When True, simplify paths by removing "invisible" > # points to reduce file size and increase rendering > # speed > #path.simplify_threshold : 0.1 # The threshold of similarity below which > # vertices will be removed in the > simplification > # process > #path.snap : True # When True, rectilinear axis-aligned paths will be > snapped to > # the nearest pixel when certain criteria are met. When > False, > # paths will never be snapped. > #path.sketch : None # May be none, or a 3-tuple of the form (scale, length, > # randomness). > # *scale* is the amplitude of the wiggle > # perpendicular to the line (in pixels). *length* > # is the length of the wiggle along the line (in > # pixels). *randomness* is the factor by which > # the length is randomly scaled. > > # the default savefig params can be different from the display params > # e.g., you may want a higher resolution, or to make the figure > # background white > #savefig.dpi : 100 # figure dots per inch > #savefig.facecolor : white # figure facecolor when saving > #savefig.edgecolor : white # figure edgecolor when saving > #savefig.format : png # png, ps, pdf, svg > #savefig.bbox : standard # 'tight' or 'standard'. > #savefig.pad_inches : 0.1 # Padding to be used when bbox is set to > 'tight' > #savefig.jpeg_quality: 95 # when a jpeg is saved, the default > quality parameter. > #savefig.directory : ~ # default directory in savefig dialog box, > # leave empty to always use current > working directory > > # tk backend params > #tk.window_focus : False # Maintain shell focus for TkAgg > > # ps backend params > #ps.papersize : letter # auto, letter, legal, ledger, A0-A10, B0-B10 > #ps.useafm : False # use of afm fonts, results in small files > #ps.usedistiller : False # can be: None, ghostscript or xpdf > # Experimental: may produce > smaller files. > # xpdf intended for production > of publication quality files, > # but requires ghostscript, xpdf > and ps2eps > #ps.distiller.res : 6000 # dpi > #ps.fonttype : 3 # Output Type 3 (Type3) or Type 42 > (TrueType) > > # pdf backend params > #pdf.compression : 6 # integer from 0 to 9 > # 0 disables compression (good for debugging) > #pdf.fonttype : 3 # Output Type 3 (Type3) or Type 42 > (TrueType) > > # svg backend params > #svg.image_inline : True # write raster image data directly into the > svg file > #svg.image_noscale : False # suppress scaling of raster data embedded > in SVG > #svg.fonttype : 'path' # How to handle SVG fonts: > # 'none': Assume fonts are installed on the machine where the SVG will > be viewed. > # 'path': Embed characters as paths -- supported by most SVG renderers > # 'svgfont': Embed characters as SVG fonts -- supported only by Chrome, > # Opera and Safari > > # docstring params > #docstring.hardcopy = False # set this when you want to generate hardcopy > docstring > > # Set the verbose flags. This controls how much information > # matplotlib gives you at runtime and where it goes. The verbosity > # levels are: silent, helpful, debug, debug-annoying. Any level is > # inclusive of all the levels below it. If your setting is "debug", > # you'll get all the debug and helpful messages. When submitting > # problems to the mailing-list, please set verbose to "helpful" or "debug" > # and paste the output into your report. > # > # The "fileo" gives the destination for any calls to verbose.report. > # These objects can a filename, or a filehandle like sys.stdout. > # > # You can override the rc default verbosity from the command line by > # giving the flags --verbose-LEVEL where LEVEL is one of the legal > # levels, eg --verbose-helpful. > # > # You can access the verbose instance in your code > # from matplotlib import verbose. > #verbose.level : silent # one of silent, helpful, debug, > debug-annoying > #verbose.fileo : sys.stdout # a log filename, sys.stdout or sys.stderr > > # Event keys to interact with figures/plots via keyboard. > # Customize these settings according to your needs. > # Leave the field(s) empty if you don't need a key-map. (i.e., fullscreen > : '') > > #keymap.fullscreen : f # toggling > #keymap.home : h, r, home # home or reset mnemonic > #keymap.back : left, c, backspace # forward / backward keys to enable > #keymap.forward : right, v # left handed quick navigation > #keymap.pan : p # pan mnemonic > #keymap.zoom : o # zoom mnemonic > #keymap.save : s # saving current figure > #keymap.quit : ctrl+w, cmd+w # close the current figure > #keymap.grid : g # switching on/off a grid in current > axes > #keymap.yscale : l # toggle scaling of y-axes > ('log'/'linear') > #keymap.xscale : L, k # toggle scaling of x-axes > ('log'/'linear') > #keymap.all_axes : a # enable all axes > > # Control location of examples data files > #examples.directory : '' # directory to look in for custom installation > > ###ANIMATION settings > #animation.writer : ffmpeg # MovieWriter 'backend' to use > #animation.codec : mp4 # Codec to use for writing movie > #animation.bitrate: -1 # Controls size/quality tradeoff for > movie. > # -1 implies let utility auto-determine > #animation.frame_format: 'png' # Controls frame format used by temp > files > #animation.ffmpeg_path: 'ffmpeg' # Path to ffmpeg binary. Without full > path > # $PATH is searched > #animation.ffmpeg_args: '' # Additional arguments to pass to ffmpeg > #animation.avconv_path: 'avconv' # Path to avconv binary. Without full > path > # $PATH is searched > #animation.avconv_args: '' # Additional arguments to pass to avconv > #animation.mencoder_path: 'mencoder' > # Path to mencoder binary. Without full > path > # $PATH is searched > #animation.mencoder_args: '' # Additional arguments to pass to > mencoder > > Hope this helps to isolate the error. > > Regards, > Claude > > > > > > > > > * Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia > / SP - Brazil phone: +55 13 9 9760 0453 <%2B55%2013%209%209760%200453> > cell: +55 13 9 8117 3316 <%2B55%2013%209%208117%203316> e-mail: > cl...@br... <cl...@br...> * > > > > From: Benjamin Root <ben...@ou...> > To: falbriard <cl...@br...>, Matplotlib Users < > mat...@li...>, > Date: 27/03/2014 16:20 > Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to > Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source > Sent by: ben...@gm... > ------------------------------ > > > > Claude, it would be helpful to know exactly what code you executed. Some > example code assumes interactive modes, while others simply save files > without ever showing them to the screen. > > Also, please include a copy of your matplotlibrc file. > > Ben Root > > > > On Thu, Mar 27, 2014 at 1:47 PM, <*cl...@br...*<cl...@br...>> > wrote: > Dear Ben, > > The execution of any of the Matplotlib sample code start quickly and and > exits immediately with no error message displayed at the screen. The > process runs instantly, so there is no wait in the process. > Looks more like a missing setup option, matplotlib does not find a valid > graphical screen display environment. What do you think is causing this > error in RedHat Linux? > > Regards, > Claude > > > > > * Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia > / SP - Brazil phone: **+55 13 9 9760 0453*<%2B55%2013%209%209760%200453> > * cell: **+55 13 9 8117 3316* <%2B55%2013%209%208117%203316> > * e-mail: **cl...@br...* <cl...@br...> > > > > From: Benjamin Root <*ben...@ou...* <ben...@ou...>> > To: falbriard <*cl...@br...* <cl...@br...>>, > Cc: Matplotlib Users <*mat...@li...*<mat...@li...> > > > Date: 27/03/2014 14:32 > Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to > Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source > Sent by: *ben...@gm...* <ben...@gm...> > ------------------------------ > > > > > How long did you wait? Do allow approximately one minute for the first > execution to allow for the font.cache to be built. It can appear that the > process has "hung" because it is waiting for "fc-list" subprocess to > complete. > > Cheers! > Ben Root > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > |
From: <cl...@br...> - 2014-03-27 20:08:42
|
Dear Ben, I've also repeated the install using pip unistall and install of matplotlib, both completed successfully but the issue remains, no graphical display at the RedHat Linux, as well as very fast and silent exit from the program code. The source used for my test is the 3D Scatter Sample form the Gallery: from mpl_toolkits.mplot3d import Axes3D import numpy as np import matplotlib.pyplot as plt fig = plt.figure() ax = fig.gca(projection='3d') x = np.linspace(0, 1, 100) y = np.sin(x * 2 * np.pi) / 2 + 0.5 ax.plot(x, y, zs=0, zdir='z', label='zs=0, zdir=z') colors = ('r', 'g', 'b', 'k') for c in colors: x = np.random.sample(20) y = np.random.sample(20) ax.scatter(x, y, 0, zdir='y', c=c) ax.legend() ax.set_xlim3d(0, 1) ax.set_ylim3d(0, 1) ax.set_zlim3d(0, 1) plt.show() The maplotlibrc file: ### MATPLOTLIBRC FORMAT # This is a sample matplotlib configuration file - you can find a copy # of it on your system in # site-packages/matplotlib/mpl-data/matplotlibrc. If you edit it # there, please note that it will be overwritten in your next install. # If you want to keep a permanent local copy that will not be # overwritten, place it in HOME/.matplotlib/matplotlibrc (unix/linux # like systems) and C:\Documents and Settings\yourname\.matplotlib # (win32 systems). # # This file is best viewed in a editor which supports python mode # syntax highlighting. Blank lines, or lines starting with a comment # symbol, are ignored, as are trailing comments. Other lines must # have the format # key : val # optional comment # # Colors: for the color values below, you can either use - a # matplotlib color string, such as r, k, or b - an rgb tuple, such as # (1.0, 0.5, 0.0) - a hex string, such as ff00ff or #ff00ff - a scalar # grayscale intensity such as 0.75 - a legal html color name, eg red, # blue, darkslategray #### CONFIGURATION BEGINS HERE # the default backend; one of GTK GTKAgg GTKCairo GTK3Agg GTK3Cairo # CocoaAgg MacOSX Qt4Agg TkAgg WX WXAgg Agg Cairo GDK PS PDF SVG # Template # You can also deploy your own backend outside of matplotlib by # referring to the module name (which must be in the PYTHONPATH) as # 'module://my_backend' backend : agg # If you are using the Qt4Agg backend, you can choose here # to use the PyQt4 bindings or the newer PySide bindings to # the underlying Qt4 toolkit. #backend.qt4 : PyQt4 # PyQt4 | PySide # Note that this can be overridden by the environment variable # QT_API used by Enthought Tool Suite (ETS); valid values are # "pyqt" and "pyside". The "pyqt" setting has the side effect of # forcing the use of Version 2 API for QString and QVariant. # The port to use for the web server in the WebAgg backend. # webagg.port : 8888 # If webagg.port is unavailable, a number of other random ports will # be tried until one that is available is found. # webagg.port_retries : 50 # When True, open the webbrowser to the plot that is shown # webagg.open_in_browser : True # if you are running pyplot inside a GUI and your backend choice # conflicts, we will automatically try to find a compatible one for # you if backend_fallback is True #backend_fallback: True #interactive : False #toolbar : toolbar2 # None | toolbar2 ("classic" is deprecated) #timezone : UTC # a pytz timezone string, eg US/Central or Europe/Paris # Where your matplotlib data lives if you installed to a non-default # location. This is where the matplotlib fonts, bitmaps, etc reside #datapath : /home/jdhunter/mpldata ### LINES # See http://matplotlib.org/api/artist_api.html#module-matplotlib.lines for more # information on line properties. #lines.linewidth : 1.0 # line width in points #lines.linestyle : - # solid line #lines.color : blue # has no affect on plot(); see axes.color_cycle #lines.marker : None # the default marker #lines.markeredgewidth : 0.5 # the line width around the marker symbol #lines.markersize : 6 # markersize, in points #lines.dash_joinstyle : miter # miter|round|bevel #lines.dash_capstyle : butt # butt|round|projecting #lines.solid_joinstyle : miter # miter|round|bevel #lines.solid_capstyle : projecting # butt|round|projecting #lines.antialiased : True # render lines in antialised (no jaggies) ### PATCHES # Patches are graphical objects that fill 2D space, like polygons or # circles. See # http://matplotlib.org/api/artist_api.html#module-matplotlib.patches # information on patch properties #patch.linewidth : 1.0 # edge width in points #patch.facecolor : blue #patch.edgecolor : black #patch.antialiased : True # render patches in antialised (no jaggies) ### FONT # # font properties used by text.Text. See # http://matplotlib.org/api/font_manager_api.html for more # information on font properties. The 6 font properties used for font # matching are given below with their default values. # # The font.family property has five values: 'serif' (e.g., Times), # 'sans-serif' (e.g., Helvetica), 'cursive' (e.g., Zapf-Chancery), # 'fantasy' (e.g., Western), and 'monospace' (e.g., Courier). Each of # these font families has a default list of font names in decreasing # order of priority associated with them. When text.usetex is False, # font.family may also be one or more concrete font names. # # The font.style property has three values: normal (or roman), italic # or oblique. The oblique style will be used for italic, if it is not # present. # # The font.variant property has two values: normal or small-caps. For # TrueType fonts, which are scalable fonts, small-caps is equivalent # to using a font size of 'smaller', or about 83% of the current font # size. # # The font.weight property has effectively 13 values: normal, bold, # bolder, lighter, 100, 200, 300, ..., 900. Normal is the same as # 400, and bold is 700. bolder and lighter are relative values with # respect to the current weight. # # The font.stretch property has 11 values: ultra-condensed, # extra-condensed, condensed, semi-condensed, normal, semi-expanded, # expanded, extra-expanded, ultra-expanded, wider, and narrower. This # property is not currently implemented. # # The font.size property is the default font size for text, given in pts. # 12pt is the standard value. # #font.family : sans-serif #font.style : normal #font.variant : normal #font.weight : medium #font.stretch : normal # note that font.size controls default text sizes. To configure # special text sizes tick labels, axes, labels, title, etc, see the rc # settings for axes and ticks. Special text sizes can be defined # relative to font.size, using the following values: xx-small, x-small, # small, medium, large, x-large, xx-large, larger, or smaller #font.size : 12.0 #font.serif : Bitstream Vera Serif, New Century Schoolbook, Century Schoolbook L, Utopia, ITC Bookman, Bookman, Nimbus Roman No9 L, Times New Roman, Times, Palatino, Charter, serif #font.sans-serif : Bitstream Vera Sans, Lucida Grande, Verdana, Geneva, Lucid, Arial, Helvetica, Avant Garde, sans-serif #font.cursive : Apple Chancery, Textile, Zapf Chancery, Sand, cursive #font.fantasy : Comic Sans MS, Chicago, Charcoal, Impact, Western, fantasy #font.monospace : Bitstream Vera Sans Mono, Andale Mono, Nimbus Mono L, Courier New, Courier, Fixed, Terminal, monospace ### TEXT # text properties used by text.Text. See # http://matplotlib.org/api/artist_api.html#module-matplotlib.text for more # information on text properties #text.color : black ### LaTeX customizations. See http://www.scipy.org/Wiki/Cookbook/Matplotlib/UsingTex #text.usetex : False # use latex for all text handling. The following fonts # are supported through the usual rc parameter settings: # new century schoolbook, bookman, times, palatino, # zapf chancery, charter, serif, sans-serif, helvetica, # avant garde, courier, monospace, computer modern roman, # computer modern sans serif, computer modern typewriter # If another font is desired which can loaded using the # LaTeX \usepackage command, please inquire at the # matplotlib mailing list #text.latex.unicode : False # use "ucs" and "inputenc" LaTeX packages for handling # unicode strings. #text.latex.preamble : # IMPROPER USE OF THIS FEATURE WILL LEAD TO LATEX FAILURES # AND IS THEREFORE UNSUPPORTED. PLEASE DO NOT ASK FOR HELP # IF THIS FEATURE DOES NOT DO WHAT YOU EXPECT IT TO. # preamble is a comma separated list of LaTeX statements # that are included in the LaTeX document preamble. # An example: # text.latex.preamble : \usepackage{bm},\usepackage{euler} # The following packages are always loaded with usetex, so # beware of package collisions: color, geometry, graphicx, # type1cm, textcomp. Adobe Postscript (PSSNFS) font packages # may also be loaded, depending on your font settings #text.dvipnghack : None # some versions of dvipng don't handle alpha # channel properly. Use True to correct # and flush ~/.matplotlib/tex.cache # before testing and False to force # correction off. None will try and # guess based on your dvipng version #text.hinting : 'auto' # May be one of the following: # 'none': Perform no hinting # 'auto': Use freetype's autohinter # 'native': Use the hinting information in the # font file, if available, and if your # freetype library supports it # 'either': Use the native hinting information, # or the autohinter if none is available. # For backward compatibility, this value may also be # True === 'auto' or False === 'none'. #text.hinting_factor : 8 # Specifies the amount of softness for hinting in the # horizontal direction. A value of 1 will hint to full # pixels. A value of 2 will hint to half pixels etc. #text.antialiased : True # If True (default), the text will be antialiased. # This only affects the Agg backend. # The following settings allow you to select the fonts in math mode. # They map from a TeX font name to a fontconfig font pattern. # These settings are only used if mathtext.fontset is 'custom'. # Note that this "custom" mode is unsupported and may go away in the # future. #mathtext.cal : cursive #mathtext.rm : serif #mathtext.tt : monospace #mathtext.it : serif:italic #mathtext.bf : serif:bold #mathtext.sf : sans #mathtext.fontset : cm # Should be 'cm' (Computer Modern), 'stix', # 'stixsans' or 'custom' #mathtext.fallback_to_cm : True # When True, use symbols from the Computer Modern # fonts when a symbol can not be found in one of # the custom math fonts. #mathtext.default : it # The default font to use for math. # Can be any of the LaTeX font names, including # the special name "regular" for the same font # used in regular text. ### AXES # default face and edge color, default tick sizes, # default fontsizes for ticklabels, and so on. See # http://matplotlib.org/api/axes_api.html#module-matplotlib.axes #axes.hold : True # whether to clear the axes by default on #axes.facecolor : white # axes background color #axes.edgecolor : black # axes edge color #axes.linewidth : 1.0 # edge linewidth #axes.grid : False # display grid or not #axes.titlesize : large # fontsize of the axes title #axes.labelsize : medium # fontsize of the x any y labels #axes.labelweight : normal # weight of the x and y labels #axes.labelcolor : black #axes.axisbelow : False # whether axis gridlines and ticks are below # the axes elements (lines, text, etc) #axes.formatter.limits : -7, 7 # use scientific notation if log10 # of the axis range is smaller than the # first or larger than the second #axes.formatter.use_locale : False # When True, format tick labels # according to the user's locale. # For example, use ',' as a decimal # separator in the fr_FR locale. #axes.formatter.use_mathtext : False # When True, use mathtext for scientific # notation. #axes.unicode_minus : True # use unicode for the minus symbol # rather than hyphen. See # http://en.wikipedia.org/wiki/Plus_and_minus_signs#Character_codes #axes.color_cycle : b, g, r, c, m, y, k # color cycle for plot lines # as list of string colorspecs: # single letter, long name, or # web-style hex #axes.xmargin : 0 # x margin. See `axes.Axes.margins` #axes.ymargin : 0 # y margin See `axes.Axes.margins` #polaraxes.grid : True # display grid on polar axes #axes3d.grid : True # display grid on 3d axes ### TICKS # see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick #xtick.major.size : 4 # major tick size in points #xtick.minor.size : 2 # minor tick size in points #xtick.major.width : 0.5 # major tick width in points #xtick.minor.width : 0.5 # minor tick width in points #xtick.major.pad : 4 # distance to major tick label in points #xtick.minor.pad : 4 # distance to the minor tick label in points #xtick.color : k # color of the tick labels #xtick.labelsize : medium # fontsize of the tick labels #xtick.direction : in # direction: in, out, or inout #ytick.major.size : 4 # major tick size in points #ytick.minor.size : 2 # minor tick size in points #ytick.major.width : 0.5 # major tick width in points #ytick.minor.width : 0.5 # minor tick width in points #ytick.major.pad : 4 # distance to major tick label in points #ytick.minor.pad : 4 # distance to the minor tick label in points #ytick.color : k # color of the tick labels #ytick.labelsize : medium # fontsize of the tick labels #ytick.direction : in # direction: in, out, or inout ### GRIDS #grid.color : black # grid color #grid.linestyle : : # dotted #grid.linewidth : 0.5 # in points #grid.alpha : 1.0 # transparency, between 0.0 and 1.0 ### Legend #legend.fancybox : False # if True, use a rounded box for the # legend, else a rectangle #legend.isaxes : True #legend.numpoints : 2 # the number of points in the legend line #legend.fontsize : large #legend.borderpad : 0.5 # border whitespace in fontsize units #legend.markerscale : 1.0 # the relative size of legend markers vs. original # the following dimensions are in axes coords #legend.labelspacing : 0.5 # the vertical space between the legend entries in fraction of fontsize #legend.handlelength : 2. # the length of the legend lines in fraction of fontsize #legend.handleheight : 0.7 # the height of the legend handle in fraction of fontsize #legend.handletextpad : 0.8 # the space between the legend line and legend text in fraction of fontsize #legend.borderaxespad : 0.5 # the border between the axes and legend edge in fraction of fontsize #legend.columnspacing : 2. # the border between the axes and legend edge in fraction of fontsize #legend.shadow : False #legend.frameon : True # whether or not to draw a frame around legend #legend.scatterpoints : 3 # number of scatter points ### FIGURE # See http://matplotlib.org/api/figure_api.html#matplotlib.figure.Figure #figure.figsize : 8, 6 # figure size in inches #figure.dpi : 80 # figure dots per inch #figure.facecolor : 0.75 # figure facecolor; 0.75 is scalar gray #figure.edgecolor : white # figure edgecolor #figure.autolayout : False # When True, automatically adjust subplot # parameters to make the plot fit the figure #figure.max_open_warning : 20 # The maximum number of figures to open through # the pyplot interface before emitting a warning. # If less than one this feature is disabled. # The figure subplot parameters. All dimensions are a fraction of the # figure width or height #figure.subplot.left : 0.125 # the left side of the subplots of the figure #figure.subplot.right : 0.9 # the right side of the subplots of the figure #figure.subplot.bottom : 0.1 # the bottom of the subplots of the figure #figure.subplot.top : 0.9 # the top of the subplots of the figure #figure.subplot.wspace : 0.2 # the amount of width reserved for blank space between subplots #figure.subplot.hspace : 0.2 # the amount of height reserved for white space between subplots ### IMAGES #image.aspect : equal # equal | auto | a number #image.interpolation : bilinear # see help(imshow) for options #image.cmap : jet # gray | jet etc... #image.lut : 256 # the size of the colormap lookup table #image.origin : upper # lower | upper #image.resample : False ### CONTOUR PLOTS #contour.negative_linestyle : dashed # dashed | solid ### Agg rendering ### Warning: experimental, 2008/10/10 #agg.path.chunksize : 0 # 0 to disable; values in the range # 10000 to 100000 can improve speed slightly # and prevent an Agg rendering failure # when plotting very large data sets, # especially if they are very gappy. # It may cause minor artifacts, though. # A value of 20000 is probably a good # starting point. ### SAVING FIGURES #path.simplify : True # When True, simplify paths by removing "invisible" # points to reduce file size and increase rendering # speed #path.simplify_threshold : 0.1 # The threshold of similarity below which # vertices will be removed in the simplification # process #path.snap : True # When True, rectilinear axis-aligned paths will be snapped to # the nearest pixel when certain criteria are met. When False, # paths will never be snapped. #path.sketch : None # May be none, or a 3-tuple of the form (scale, length, # randomness). # *scale* is the amplitude of the wiggle # perpendicular to the line (in pixels). *length* # is the length of the wiggle along the line (in # pixels). *randomness* is the factor by which # the length is randomly scaled. # the default savefig params can be different from the display params # e.g., you may want a higher resolution, or to make the figure # background white #savefig.dpi : 100 # figure dots per inch #savefig.facecolor : white # figure facecolor when saving #savefig.edgecolor : white # figure edgecolor when saving #savefig.format : png # png, ps, pdf, svg #savefig.bbox : standard # 'tight' or 'standard'. #savefig.pad_inches : 0.1 # Padding to be used when bbox is set to 'tight' #savefig.jpeg_quality: 95 # when a jpeg is saved, the default quality parameter. #savefig.directory : ~ # default directory in savefig dialog box, # leave empty to always use current working directory # tk backend params #tk.window_focus : False # Maintain shell focus for TkAgg # ps backend params #ps.papersize : letter # auto, letter, legal, ledger, A0-A10, B0-B10 #ps.useafm : False # use of afm fonts, results in small files #ps.usedistiller : False # can be: None, ghostscript or xpdf # Experimental: may produce smaller files. # xpdf intended for production of publication quality files, # but requires ghostscript, xpdf and ps2eps #ps.distiller.res : 6000 # dpi #ps.fonttype : 3 # Output Type 3 (Type3) or Type 42 (TrueType) # pdf backend params #pdf.compression : 6 # integer from 0 to 9 # 0 disables compression (good for debugging) #pdf.fonttype : 3 # Output Type 3 (Type3) or Type 42 (TrueType) # svg backend params #svg.image_inline : True # write raster image data directly into the svg file #svg.image_noscale : False # suppress scaling of raster data embedded in SVG #svg.fonttype : 'path' # How to handle SVG fonts: # 'none': Assume fonts are installed on the machine where the SVG will be viewed. # 'path': Embed characters as paths -- supported by most SVG renderers # 'svgfont': Embed characters as SVG fonts -- supported only by Chrome, # Opera and Safari # docstring params #docstring.hardcopy = False # set this when you want to generate hardcopy docstring # Set the verbose flags. This controls how much information # matplotlib gives you at runtime and where it goes. The verbosity # levels are: silent, helpful, debug, debug-annoying. Any level is # inclusive of all the levels below it. If your setting is "debug", # you'll get all the debug and helpful messages. When submitting # problems to the mailing-list, please set verbose to "helpful" or "debug" # and paste the output into your report. # # The "fileo" gives the destination for any calls to verbose.report. # These objects can a filename, or a filehandle like sys.stdout. # # You can override the rc default verbosity from the command line by # giving the flags --verbose-LEVEL where LEVEL is one of the legal # levels, eg --verbose-helpful. # # You can access the verbose instance in your code # from matplotlib import verbose. #verbose.level : silent # one of silent, helpful, debug, debug-annoying #verbose.fileo : sys.stdout # a log filename, sys.stdout or sys.stderr # Event keys to interact with figures/plots via keyboard. # Customize these settings according to your needs. # Leave the field(s) empty if you don't need a key-map. (i.e., fullscreen : '') #keymap.fullscreen : f # toggling #keymap.home : h, r, home # home or reset mnemonic #keymap.back : left, c, backspace # forward / backward keys to enable #keymap.forward : right, v # left handed quick navigation #keymap.pan : p # pan mnemonic #keymap.zoom : o # zoom mnemonic #keymap.save : s # saving current figure #keymap.quit : ctrl+w, cmd+w # close the current figure #keymap.grid : g # switching on/off a grid in current axes #keymap.yscale : l # toggle scaling of y-axes ('log'/'linear') #keymap.xscale : L, k # toggle scaling of x-axes ('log'/'linear') #keymap.all_axes : a # enable all axes # Control location of examples data files #examples.directory : '' # directory to look in for custom installation ###ANIMATION settings #animation.writer : ffmpeg # MovieWriter 'backend' to use #animation.codec : mp4 # Codec to use for writing movie #animation.bitrate: -1 # Controls size/quality tradeoff for movie. # -1 implies let utility auto-determine #animation.frame_format: 'png' # Controls frame format used by temp files #animation.ffmpeg_path: 'ffmpeg' # Path to ffmpeg binary. Without full path # $PATH is searched #animation.ffmpeg_args: '' # Additional arguments to pass to ffmpeg #animation.avconv_path: 'avconv' # Path to avconv binary. Without full path # $PATH is searched #animation.avconv_args: '' # Additional arguments to pass to avconv #animation.mencoder_path: 'mencoder' # Path to mencoder binary. Without full path # $PATH is searched #animation.mencoder_args: '' # Additional arguments to pass to mencoder Hope this helps to isolate the error. Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... From: Benjamin Root <ben...@ou...> To: falbriard <cl...@br...>, Matplotlib Users <mat...@li...>, Date: 27/03/2014 16:20 Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source Sent by: ben...@gm... Claude, it would be helpful to know exactly what code you executed. Some example code assumes interactive modes, while others simply save files without ever showing them to the screen. Also, please include a copy of your matplotlibrc file. Ben Root On Thu, Mar 27, 2014 at 1:47 PM, <cl...@br...> wrote: Dear Ben, The execution of any of the Matplotlib sample code start quickly and and exits immediately with no error message displayed at the screen. The process runs instantly, so there is no wait in the process. Looks more like a missing setup option, matplotlib does not find a valid graphical screen display environment. What do you think is causing this error in RedHat Linux? Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... From: Benjamin Root <ben...@ou...> To: falbriard <cl...@br...>, Cc: Matplotlib Users <mat...@li...> Date: 27/03/2014 14:32 Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source Sent by: ben...@gm... How long did you wait? Do allow approximately one minute for the first execution to allow for the font.cache to be built. It can appear that the process has "hung" because it is waiting for "fc-list" subprocess to complete. Cheers! Ben Root |
From: kaevy <ked...@gm...> - 2014-03-27 19:39:58
|
checking the toolbar mode might help you. tb = get_current_fig_manager().toolbar if tb=='' : then you know that the toolbar is being used. this may not answer your question totally - but might help. k -- View this message in context: http://matplotlib.1069221.n5.nabble.com/Disable-zoom-on-toolbar-tp14159p43151.html Sent from the matplotlib - users mailing list archive at Nabble.com. |
From: Benjamin R. <ben...@ou...> - 2014-03-27 19:20:55
|
Claude, it would be helpful to know exactly what code you executed. Some example code assumes interactive modes, while others simply save files without ever showing them to the screen. Also, please include a copy of your matplotlibrc file. Ben Root On Thu, Mar 27, 2014 at 1:47 PM, <cl...@br...> wrote: > Dear Ben, > > The execution of any of the Matplotlib sample code start quickly and and > exits immediately with no error message displayed at the screen. The > process runs instantly, so there is no wait in the process. > Looks more like a missing setup option, matplotlib does not find a valid > graphical screen display environment. What do you think is causing this > error in RedHat Linux? > > Regards, > Claude > > > > > > > > * Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia > / SP - Brazil phone: +55 13 9 9760 0453 <%2B55%2013%209%209760%200453> > cell: +55 13 9 8117 3316 <%2B55%2013%209%208117%203316> e-mail: > cl...@br... <cl...@br...> * > > > From: Benjamin Root <ben...@ou...> > To: falbriard <cl...@br...>, > Cc: Matplotlib Users <mat...@li...> > Date: 27/03/2014 14:32 > Subject: Re: [Matplotlib-users] RedHat and Release Upgrade to > Numpy 1.8.1 and Matplotlib 1.3.1 / Install from Source > Sent by: ben...@gm... > ------------------------------ > > > > How long did you wait? Do allow approximately one minute for the first > execution to allow for the font.cache to be built. It can appear that the > process has "hung" because it is waiting for "fc-list" subprocess to > complete. > > Cheers! > Ben Root > |
From: robbisg <rob...@gm...> - 2014-03-27 17:42:14
|
Yes! It was ipython issue! I was convinced that my version were the github one!!! I'm sorry! Thank you for the quick response! Roberto -- View this message in context: http://matplotlib.1069221.n5.nabble.com/ipython-pylab-interactive-mode-problem-tp43144p43149.html Sent from the matplotlib - users mailing list archive at Nabble.com. |
From: Benjamin R. <ben...@ou...> - 2014-03-27 17:32:26
|
How long did you wait? Do allow approximately one minute for the first execution to allow for the font.cache to be built. It can appear that the process has "hung" because it is waiting for "fc-list" subprocess to complete. Cheers! Ben Root |
From: Benjamin R. <ben...@ou...> - 2014-03-27 17:29:44
|
0.12.1 is a "very" old version of ipython. I know there have been some changes to matplotlib to deal with changes that ipython has made over the past two years, but I did think that they were all backwards compatible. @mdboom, do you think this could be related to that "fix" we made on detecting whether we were at the REPL or not? |
From: <cl...@br...> - 2014-03-27 17:26:48
|
Dear colleagues, I've decided to upgrade my matpoltlib installation under a RedHat 6.4 Linux, by removing the original yum package and installing latest version of Numpy 18.1 and Matplotlib 1.3.1. My Python is still 2.6.6. The manual installation from source completed successfully, but when calling a sample code, the execution starts and stops silently with no error message. I guess some configuration is missing to define the graphical backend configuration, among one of the valid choices: I ve tried to set the backend by the commands: import matplotlib matplotlib.use('backend_name') list of suported backends (template) # ['GTK', 'GTKAgg', 'GTKCairo', 'MacOSX', 'Qt4Agg', 'TkAgg', 'WX', 'WXAgg', 'CocoaAgg', 'GTK3Cairo', 'GTK3Agg', 'WebAgg', #'agg', 'cairo', 'emf', 'gdk', 'pdf', 'pgf', 'ps', 'svg', 'template'] By testing I was not able to identify a working backend for Redhat, so there might be some missing install dependency in case of a manual install. Could your please give me some hints what's missing to activate the graphical interface at RedHat Linix. Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... |
From: robbisg <rob...@gm...> - 2014-03-27 17:14:47
|
Hi all, I've update matplotlib to the git version of the software (1.4.x), after updating it the interactive mode on ipython stopped working. I'll briefly show what happens: $ ipython -- pylab Python 2.7.3 (default, Feb 27 2014, 19:58:35) Type "copyright", "credits" or "license" for more information. IPython 0.12.1 -- An enhanced Interactive Python. ? -> Introduction and overview of IPython's features. %quickref -> Quick reference. help -> Python's own help system. object? -> Details about 'object', use 'object??' for extra details. Welcome to pylab, a matplotlib-based Python environment [backend: GTKAgg]. For more information, type 'help(pylab)' In [1]: plot(np.sin(np.arange(0,10,0.1))) Out[1]: [<matplotlib.lines.Line2D at 0x42458d0>] And it doesn't pop un anything until I enter command show(). I tried to change the backend from configuration file, but it doesn't affect anything. The only way to automatically show it is to enter after plot statement, pause statement (I read it from the github discussions!). Either commands like ion() and interactive(True) don't affect anything!! Anyone knows how to solve this issue? Thank you, Roberto -- View this message in context: http://matplotlib.1069221.n5.nabble.com/ipython-pylab-interactive-mode-problem-tp43144.html Sent from the matplotlib - users mailing list archive at Nabble.com. |
From: Benjamin R. <ben...@ou...> - 2014-03-26 15:47:39
|
Not that I am aware of. We kind of brute-force it in the plot_surface() function: polys = [] # Only need these vectors to shade if there is no cmap if cmap is None and shade : totpts = int(np.ceil(float(rows - 1) / rstride) * np.ceil(float(cols - 1) / cstride)) v1 = np.empty((totpts, 3)) v2 = np.empty((totpts, 3)) # This indexes the vertex points which_pt = 0 #colset contains the data for coloring: either average z or the facecolor colset = [] for rs in xrange(0, rows-1, rstride): for cs in xrange(0, cols-1, cstride): ps = [] for a in (X, Y, Z) : ztop = a[rs,cs:min(cols, cs+cstride+1)] zleft = a[rs+1:min(rows, rs+rstride+1), min(cols-1, cs+cstride)] zbase = a[min(rows-1, rs+rstride), cs:min(cols, cs+cstride+1):][::-1] zright = a[rs:min(rows-1, rs+rstride):, cs][::-1] z = np.concatenate((ztop, zleft, zbase, zright)) ps.append(z) # The construction leaves the array with duplicate points, which # are removed here. ps = zip(*ps) lastp = np.array([]) ps2 = [ps[0]] + [ps[i] for i in xrange(1, len(ps)) if ps[i] != ps[i-1]] avgzsum = sum(p[2] for p in ps2) polys.append(ps2) if fcolors is not None: colset.append(fcolors[rs][cs]) else: colset.append(avgzsum / len(ps2)) # Only need vectors to shade if no cmap if cmap is None and shade: i1, i2, i3 = 0, int(len(ps2)/3), int(2*len(ps2)/3) v1[which_pt] = np.array(ps2[i1]) - np.array(ps2[i2]) v2[which_pt] = np.array(ps2[i2]) - np.array(ps2[i3]) which_pt += 1 if cmap is None and shade: normals = np.cross(v1, v2) else : normals = [] If you find a better way to do this, I will owe you some beers. Cheers! Ben Root On Wed, Mar 26, 2014 at 7:17 AM, <cl...@br...> wrote: > Dear colleagues, > > Exploring the 3D support for plotting a simple trapezoid isosceles based > on eight locations with x,y,z (imagine a water tank). When doing a manual > selection of the collections that defines each surface plane, the drawing > works well (see a sample below). Watching for a more automated process that > could work with a complex surface based on any Polygons. > > My question: Is there an algorithm, or function in Numpy or Matplotlib > that identifies the quartet of each plane in the sample below? I've tried > to apply Numpy function "combinations", but it generates too many > collections. > > Thanks in advance for your hint to optimize this drawing with the > Matplotlib with Poly3DCollection > > Sample Code > ----------- > from mpl_toolkits.mplot3d import Axes3D > from mpl_toolkits.mplot3d.art3d import Poly3DCollection > from mpl_toolkits.mplot3d.art3d import Line3DCollection > import matplotlib.pyplot as plt > from matplotlib import cm > import matplotlib.colors as colors > from numpy import random > fig = plt.figure() > ax = Axes3D(fig) > # for random color settings > color = colors.rgb2hex(random.rand(3)) > # blue color > color = 'b' > #mypoly = [[2, 0, -1], [2, 0, 1], [4, 0, 1], [4, 0, -1], [0, 4, -2], [0, > 4, 2], [6, 4, 2], [6, 4, -2]] > # A B C D E > F G H > # Colections for drawing 3D plot with polygon (each plane defined > separately) > #plane a: A,E,H,D > #plane b: A,E,F,B > #plane c: B,F,G,C > #plane d: C,G,H,D > #plane e: E,F,G,H > #plane f: A,B,C,D > #plane collection > xa = [2,0,6,4] > ya = [0,4,4,0] > za = [-1,-2,-2,-1] > #second collection > xb = [2,0,0,2] > yb = [0,4,4,0] > zb = [-1,-2,2,1] > #third collection > xc = [2,0,6,4] > yc = [0,4,4,0] > zc = [1,2,2,1] > #fourth collection > xd = [4,6,6,4] > yd = [0,4,4,0] > zd = [1,2,-2,-1] > #fifth collection (kept open, to watch the plot result) > xe = [0,0,6,6] > ye = [4,4,4,4] > ze = [-2,2,2,-2] > #sixth collection > xf = [2,2,4,4] > yf = [0,0,0,0] > zf = [-1,1,1,-1] > # to do > verts = [zip(xa, ya,za),zip(xb, yb,zb),zip(xc, yc,zc),zip(xd, > yd,zd),zip(xf, yf,zf)] > ax.add_collection3d(Poly3DCollection(verts, facecolors=color, > linewidths=1, alpha=0.5)) > ax.add_collection3d(Line3DCollection(verts, colors='k', linewidths=0.2, > linestyles=':')) > # set axis view > # add grid > ax.grid(True) > # view > ax.set_xlim(-1,6) > ax.set_ylim(-1,6) > ax.set_zlim(-5,5) > ax.view_init(elev=10., azim=110.) > ax.get_xaxis().set_visible(True) > ax.get_yaxis().set_visible(True) > ax.set_autoscale_on(True) > plt.show() > > Thanks for support. > > Regards, > Claude > > > > > > > > > > * Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia > / SP - Brazil phone: +55 13 9 9760 0453 <%2B55%2013%209%209760%200453> > cell: +55 13 9 8117 3316 <%2B55%2013%209%208117%203316> e-mail: > cl...@br... <cl...@br...> * > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > |
From: <cl...@br...> - 2014-03-26 11:48:18
|
Dear colleagues, Exploring the 3D support for plotting a simple trapezoid isosceles based on eight locations with x,y,z (imagine a water tank). When doing a manual selection of the collections that defines each surface plane, the drawing works well (see a sample below). Watching for a more automated process that could work with a complex surface based on any Polygons. My question: Is there an algorithm, or function in Numpy or Matplotlib that identifies the quartet of each plane in the sample below? I've tried to apply Numpy function "combinations", but it generates too many collections. Thanks in advance for your hint to optimize this drawing with the Matplotlib with Poly3DCollection Sample Code ----------- from mpl_toolkits.mplot3d import Axes3D from mpl_toolkits.mplot3d.art3d import Poly3DCollection from mpl_toolkits.mplot3d.art3d import Line3DCollection import matplotlib.pyplot as plt from matplotlib import cm import matplotlib.colors as colors from numpy import random fig = plt.figure() ax = Axes3D(fig) # for random color settings color = colors.rgb2hex(random.rand(3)) # blue color color = 'b' #mypoly = [[2, 0, -1], [2, 0, 1], [4, 0, 1], [4, 0, -1], [0, 4, -2], [0, 4, 2], [6, 4, 2], [6, 4, -2]] # A B C D E F G H # Colections for drawing 3D plot with polygon (each plane defined separately) #plane a: A,E,H,D #plane b: A,E,F,B #plane c: B,F,G,C #plane d: C,G,H,D #plane e: E,F,G,H #plane f: A,B,C,D #plane collection xa = [2,0,6,4] ya = [0,4,4,0] za = [-1,-2,-2,-1] #second collection xb = [2,0,0,2] yb = [0,4,4,0] zb = [-1,-2,2,1] #third collection xc = [2,0,6,4] yc = [0,4,4,0] zc = [1,2,2,1] #fourth collection xd = [4,6,6,4] yd = [0,4,4,0] zd = [1,2,-2,-1] #fifth collection (kept open, to watch the plot result) xe = [0,0,6,6] ye = [4,4,4,4] ze = [-2,2,2,-2] #sixth collection xf = [2,2,4,4] yf = [0,0,0,0] zf = [-1,1,1,-1] # to do verts = [zip(xa, ya,za),zip(xb, yb,zb),zip(xc, yc,zc),zip(xd, yd,zd),zip(xf, yf,zf)] ax.add_collection3d(Poly3DCollection(verts, facecolors=color, linewidths=1, alpha=0.5)) ax.add_collection3d(Line3DCollection(verts, colors='k', linewidths=0.2, linestyles=':')) # set axis view # add grid ax.grid(True) # view ax.set_xlim(-1,6) ax.set_ylim(-1,6) ax.set_zlim(-5,5) ax.view_init(elev=10., azim=110.) ax.get_xaxis().set_visible(True) ax.get_yaxis().set_visible(True) ax.set_autoscale_on(True) plt.show() Thanks for support. Regards, Claude Claude Falbriard Certified IT Specialist L2 - Middleware AMS Hortolândia / SP - Brazil phone: +55 13 9 9760 0453 cell: +55 13 9 8117 3316 e-mail: cl...@br... |
From: Pierre H. <pie...@cr...> - 2014-03-26 09:56:09
|
Hi, True enough, I didn't tested in a Notebook, but now it seems to work as well: https://gist.github.com/pierre-haessig/9779940 http://nbviewer.ipython.org/gist/pierre-haessig/9779940 (just a test with mpl.rcParams['axes.facecolor'] = 'red') best, Pierre Le 25/03/2014 18:20, Adam Hughes a écrit : > Thanks Pierre. > > I tried this with several different color types and couldn't see any > difference in my plots in the notebook. Did you by chance try this > out and see a difference? > > > On Tue, Mar 25, 2014 at 9:51 AM, Pierre Haessig > <pie...@cr... <mailto:pie...@cr...>> wrote: > > Hi, > > Le 20/03/2014 18:40, Adam Hughes a écrit : > > I am using an IPython notebook style that has a soft, yellow > > background that I think is more appealing that white. When I make a > > plot, I'd like the background of the plot (ie, everything that is > > outside the x and y axis) to be the same color. I'm trying to > change > > the figure.facecolor parameter through rc params but I don't see any > > changes. Is figure.facecolor event he correct parameter? > > > > Has anyone done this successfully? > > > I think that 'axes.facecolor' does the job. > > 'figure.facecolor' changes the background of the figure outside the > plots (axes), that is the background color of the windows (which > is not > visible in the Notebook). > > best, > Pierre > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases > and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > <mailto:Mat...@li...> > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > |
From: Slavin, J. <js...@cf...> - 2014-03-25 15:45:43
|
I think what the responders have in mind is simply outputting files in a different format, e.g. png, which is rasterized. One alternative you might consider is using code written by Tom Robataille called rasterized_scatter. It automatically rasterizes your data points. You can find it on github. Jon On Sat, Mar 22, 2014 at 4:39 PM, < mat...@li...> wrote: > From: Christopher Kuhlman <cku...@vb...> > To: Goyo <goy...@gm...> > Cc: matplotlib-users <mat...@li...> > Date: Sat, 22 Mar 2014 16:38:59 -0400 (EDT) > Subject: Re: [Matplotlib-users] how to reduce the file size of plots > generated with matplotlib > Thank you both for your fast replies. (Just an aside, plotting all the > points is a quick way to detect outliers.) > > Before I sent the email, I tried to find a simple raster command in > matplotlib to do just that (convert the image to raster), but I could not > find one in my search. Is there such a thing? > > Thanks again. > > c > > ----- Original Message ----- > From: "Goyo" <goy...@gm...> > To: "Christopher Kuhlman" <cku...@vb...> > Cc: "matplotlib-users" <mat...@li...> > Sent: Saturday, March 22, 2014 4:11:08 PM > Subject: Re: [Matplotlib-users] how to reduce the file size of plots > generated with matplotlib > > 2014-03-22 20:23 GMT+01:00 Christopher Kuhlman <cku...@vb...>: > [...] > > For example, most recently, I am plotting 3 data sets; each data set has > about 90,000 points. If I plot all three sets in one PDF figure, the file > size is over 2MB. > > This seems absurd to me. I used R plotting for many years (again, my > own homegrown code, for 6 years) and never had this issue, and I was making > these kinds of plots/figures. > > > > I thought it may be a vector/raster issue, but the following web page > says that PDF are generated as vector image, which, to my understanding > (which could be wrong), is the more compact format. > > http://matplotlib.org/faq/usage_faq.html > [...] > > Roughly speaking, size of vector files depend on the number of points > while size of raster files depends on the number of pixels. For your > use case (many points, small images) raster output should be more > compact. > > Goyo > -- ________________________________________________________ Jonathan D. Slavin Harvard-Smithsonian CfA js...@cf... 60 Garden Street, MS 83 phone: (617) 496-7981 Cambridge, MA 02138-1516 fax: (617) 496-7577 USA ________________________________________________________ |
From: Pierre H. <pie...@cr...> - 2014-03-25 13:51:14
|
Hi, Le 20/03/2014 18:40, Adam Hughes a écrit : > I am using an IPython notebook style that has a soft, yellow > background that I think is more appealing that white. When I make a > plot, I'd like the background of the plot (ie, everything that is > outside the x and y axis) to be the same color. I'm trying to change > the figure.facecolor parameter through rc params but I don't see any > changes. Is figure.facecolor event he correct parameter? > > Has anyone done this successfully? > I think that 'axes.facecolor' does the job. 'figure.facecolor' changes the background of the figure outside the plots (axes), that is the background color of the windows (which is not visible in the Notebook). best, Pierre |
From: Jesper L. <jes...@gm...> - 2014-03-24 11:39:27
|
Hi Phil, Yes, I can confirm that upgrading fixes the issue. Thanks for the pointer to cartopy. Best regards, Jesper 2014-03-24 12:13 GMT+01:00 Phil Elson <pel...@gm...>: > I fixed an issue related to this (I too was producing map tiles) in > matplotlib v1.2 I believe. > > The original issue can be found at > https://github.com/matplotlib/matplotlib/pull/1591 and so I suggest this > might not be an issue with matplotlib >= v1.3. > > Incidentally, if you are producing map tiles you might be interested in > cartopy which will allow you to produce properly referenced geo maps (and > therefore tiles) with coastlines etc. > I've put a short-sh example in a gist () with the rendered results also > available (https://rawgithub.com/pelson/9738051/raw/map.html). I've also > got a tornado based handler version which generates the tiles upon HTTP > request rather than storing the tiles on disk (much more efficient if you > have highly dynamic data and a caching layer). > > Let me know if updating your matplotlib version helps, > > Cheers, > > Phil > > > > > > > > On 24 March 2014 09:45, Jesper Larsen <jes...@gm...> wrote: > >> Hi matplotlib users, >> >> I am using matplotlib to produce plots (tiles) in a Web Map Service. >> Unfortunately I cannot get Matplotlib to plot on the entire image. There >> are one transparent (pixel) line at the bottom and one transparent line at >> the right. This is of course a problem when the tiles are shown in a map. >> Please see example below. Can anyone see what I am doing wrong? >> >> Best regards, >> Jesper >> >> import numpy as np >> import matplotlib as mpl >> from matplotlib.figure import Figure >> from matplotlib.backends.backend_agg import FigureCanvasAgg as >> FigureCanvas >> >> w = 256 >> h = 256 >> dpi = 128 >> figsize = w/dpi, h/dpi >> fig = Figure(figsize=figsize, dpi=dpi, frameon=False) >> canvas = FigureCanvas(fig) >> ax = fig.add_axes([0, 0, 1, 1]) >> >> x = np.arange(0, 10, 0.1) >> y = np.arange(10, 20, 0.2) >> X, Y = np.meshgrid(x, y) >> D = np.ones((X.shape[0]-1, X.shape[1]-1)) >> V = np.linspace(0.0, 1.0, 10) >> ax.pcolor(X, Y, D, antialiased=False) >> ax.axis( [x[0], x[-1], y[0], y[-1]] ) >> ax.axis('off') >> filename = 'testfile.png' >> fig.savefig(filename, dpi=128) >> >> # Test image >> from PIL import Image >> im = Image.open(filename) >> print im.getcolors() >> >> >> >> ------------------------------------------------------------------------------ >> Learn Graph Databases - Download FREE O'Reilly Book >> "Graph Databases" is the definitive new guide to graph databases and their >> applications. Written by three acclaimed leaders in the field, >> this first edition is now available. Download your free book today! >> http://p.sf.net/sfu/13534_NeoTech >> _______________________________________________ >> Matplotlib-users mailing list >> Mat...@li... >> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >> >> > |
From: Jesper L. <jes...@gm...> - 2014-03-24 11:13:50
|
Hi Nicolas, Then everything is transparent. I have no .matplotlibrc file. I pulled the most recent version of mpl. And that solved the issue. Best regards, Jesper 2014-03-24 12:09 GMT+01:00 Nicolas Rougier <Nic...@in...>: > > > If you do not draw at all (no pcolor call), do you still get transparent > colors ? > If yes, what is your .matplotlibrc ? > > > Nicolas > > > On 24 Mar 2014, at 11:49, Jesper Larsen <jes...@gm...> wrote: > > > Thanks Pierre, > > > > from __future__ import division did not help me, I am using mpl 1.1.1rc. > I will try upgrading to a newer version of mpl and report back whether that > helps. My output is: > > > > [(511, (255, 255, 255, 0)), (65025, (0, 0, 128, 255))] > > > > Best regards, > > Jesper > > > > > > > > 2014-03-24 11:27 GMT+01:00 Pierre Haessig <pie...@cr...>: > > Hi, > > > > Le 24/03/2014 10:45, Jesper Larsen a écrit : > > > I am using matplotlib to produce plots (tiles) in a Web Map Service. > > > Unfortunately I cannot get Matplotlib to plot on the entire image. > > > There are one transparent (pixel) line at the bottom and one > > > transparent line at the right. This is of course a problem when the > > > tiles are shown in a map. Please see example below. Can anyone see > > > what I am doing wrong? > > I've run your code and got no transparent pixels. > > > > print im.getcolors() > > [(65536, (0, 0, 128, 255))] > > > > I also tried with __future__ division to see if there was something with > > figsize = w/dpi, h/dpi, but got the same output > > > > best, > > Pierre > > > > (python 2.7 on Linux, mpl 1.3.1) > > > > > > > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book > > "Graph Databases" is the definitive new guide to graph databases and > their > > applications. Written by three acclaimed leaders in the field, > > this first edition is now available. Download your free book today! > > http://p.sf.net/sfu/13534_NeoTech > > _______________________________________________ > > Matplotlib-users mailing list > > Mat...@li... > > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > > > > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book > > "Graph Databases" is the definitive new guide to graph databases and > their > > applications. Written by three acclaimed leaders in the field, > > this first edition is now available. Download your free book today! > > > http://p.sf.net/sfu/13534_NeoTech_______________________________________________ > > Matplotlib-users mailing list > > Mat...@li... > > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > |
From: Phil E. <pel...@gm...> - 2014-03-24 11:13:18
|
I fixed an issue related to this (I too was producing map tiles) in matplotlib v1.2 I believe. The original issue can be found at https://github.com/matplotlib/matplotlib/pull/1591 and so I suggest this might not be an issue with matplotlib >= v1.3. Incidentally, if you are producing map tiles you might be interested in cartopy which will allow you to produce properly referenced geo maps (and therefore tiles) with coastlines etc. I've put a short-sh example in a gist () with the rendered results also available (https://rawgithub.com/pelson/9738051/raw/map.html). I've also got a tornado based handler version which generates the tiles upon HTTP request rather than storing the tiles on disk (much more efficient if you have highly dynamic data and a caching layer). Let me know if updating your matplotlib version helps, Cheers, Phil On 24 March 2014 09:45, Jesper Larsen <jes...@gm...> wrote: > Hi matplotlib users, > > I am using matplotlib to produce plots (tiles) in a Web Map Service. > Unfortunately I cannot get Matplotlib to plot on the entire image. There > are one transparent (pixel) line at the bottom and one transparent line at > the right. This is of course a problem when the tiles are shown in a map. > Please see example below. Can anyone see what I am doing wrong? > > Best regards, > Jesper > > import numpy as np > import matplotlib as mpl > from matplotlib.figure import Figure > from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas > > w = 256 > h = 256 > dpi = 128 > figsize = w/dpi, h/dpi > fig = Figure(figsize=figsize, dpi=dpi, frameon=False) > canvas = FigureCanvas(fig) > ax = fig.add_axes([0, 0, 1, 1]) > > x = np.arange(0, 10, 0.1) > y = np.arange(10, 20, 0.2) > X, Y = np.meshgrid(x, y) > D = np.ones((X.shape[0]-1, X.shape[1]-1)) > V = np.linspace(0.0, 1.0, 10) > ax.pcolor(X, Y, D, antialiased=False) > ax.axis( [x[0], x[-1], y[0], y[-1]] ) > ax.axis('off') > filename = 'testfile.png' > fig.savefig(filename, dpi=128) > > # Test image > from PIL import Image > im = Image.open(filename) > print im.getcolors() > > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > |
From: Nicolas R. <Nic...@in...> - 2014-03-24 11:09:49
|
If you do not draw at all (no pcolor call), do you still get transparent colors ? If yes, what is your .matplotlibrc ? Nicolas On 24 Mar 2014, at 11:49, Jesper Larsen <jes...@gm...> wrote: > Thanks Pierre, > > from __future__ import division did not help me, I am using mpl 1.1.1rc. I will try upgrading to a newer version of mpl and report back whether that helps. My output is: > > [(511, (255, 255, 255, 0)), (65025, (0, 0, 128, 255))] > > Best regards, > Jesper > > > > 2014-03-24 11:27 GMT+01:00 Pierre Haessig <pie...@cr...>: > Hi, > > Le 24/03/2014 10:45, Jesper Larsen a écrit : > > I am using matplotlib to produce plots (tiles) in a Web Map Service. > > Unfortunately I cannot get Matplotlib to plot on the entire image. > > There are one transparent (pixel) line at the bottom and one > > transparent line at the right. This is of course a problem when the > > tiles are shown in a map. Please see example below. Can anyone see > > what I am doing wrong? > I've run your code and got no transparent pixels. > > print im.getcolors() > [(65536, (0, 0, 128, 255))] > > I also tried with __future__ division to see if there was something with > figsize = w/dpi, h/dpi, but got the same output > > best, > Pierre > > (python 2.7 on Linux, mpl 1.3.1) > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech_______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users |
From: Jesper L. <jes...@gm...> - 2014-03-24 10:49:24
|
Thanks Pierre, from __future__ import division did not help me, I am using mpl 1.1.1rc. I will try upgrading to a newer version of mpl and report back whether that helps. My output is: [(511, (255, 255, 255, 0)), (65025, (0, 0, 128, 255))] Best regards, Jesper 2014-03-24 11:27 GMT+01:00 Pierre Haessig <pie...@cr...>: > Hi, > > Le 24/03/2014 10:45, Jesper Larsen a écrit : > > I am using matplotlib to produce plots (tiles) in a Web Map Service. > > Unfortunately I cannot get Matplotlib to plot on the entire image. > > There are one transparent (pixel) line at the bottom and one > > transparent line at the right. This is of course a problem when the > > tiles are shown in a map. Please see example below. Can anyone see > > what I am doing wrong? > I've run your code and got no transparent pixels. > > print im.getcolors() > [(65536, (0, 0, 128, 255))] > > I also tried with __future__ division to see if there was something with > figsize = w/dpi, h/dpi, but got the same output > > best, > Pierre > > (python 2.7 on Linux, mpl 1.3.1) > > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > |
From: Pierre H. <pie...@cr...> - 2014-03-24 10:27:21
|
Hi, Le 24/03/2014 10:45, Jesper Larsen a écrit : > I am using matplotlib to produce plots (tiles) in a Web Map Service. > Unfortunately I cannot get Matplotlib to plot on the entire image. > There are one transparent (pixel) line at the bottom and one > transparent line at the right. This is of course a problem when the > tiles are shown in a map. Please see example below. Can anyone see > what I am doing wrong? I've run your code and got no transparent pixels. print im.getcolors() [(65536, (0, 0, 128, 255))] I also tried with __future__ division to see if there was something with figsize = w/dpi, h/dpi, but got the same output best, Pierre (python 2.7 on Linux, mpl 1.3.1) |
From: Jesper L. <jes...@gm...> - 2014-03-24 09:45:59
|
Hi matplotlib users, I am using matplotlib to produce plots (tiles) in a Web Map Service. Unfortunately I cannot get Matplotlib to plot on the entire image. There are one transparent (pixel) line at the bottom and one transparent line at the right. This is of course a problem when the tiles are shown in a map. Please see example below. Can anyone see what I am doing wrong? Best regards, Jesper import numpy as np import matplotlib as mpl from matplotlib.figure import Figure from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas w = 256 h = 256 dpi = 128 figsize = w/dpi, h/dpi fig = Figure(figsize=figsize, dpi=dpi, frameon=False) canvas = FigureCanvas(fig) ax = fig.add_axes([0, 0, 1, 1]) x = np.arange(0, 10, 0.1) y = np.arange(10, 20, 0.2) X, Y = np.meshgrid(x, y) D = np.ones((X.shape[0]-1, X.shape[1]-1)) V = np.linspace(0.0, 1.0, 10) ax.pcolor(X, Y, D, antialiased=False) ax.axis( [x[0], x[-1], y[0], y[-1]] ) ax.axis('off') filename = 'testfile.png' fig.savefig(filename, dpi=128) # Test image from PIL import Image im = Image.open(filename) print im.getcolors() |
From: Goyo <goy...@gm...> - 2014-03-22 20:53:41
|
2014-03-22 21:38 GMT+01:00 Christopher Kuhlman <cku...@vb...>: > Thank you both for your fast replies. (Just an aside, plotting all the points is a quick way to detect outliers.) > > Before I sent the email, I tried to find a simple raster command in matplotlib to do just that (convert the image to raster), but I could not find one in my search. Is there such a thing? outfile = "basefile" + ".png" Goyo |
From: Christopher K. <cku...@vb...> - 2014-03-22 20:39:11
|
Thank you both for your fast replies. (Just an aside, plotting all the points is a quick way to detect outliers.) Before I sent the email, I tried to find a simple raster command in matplotlib to do just that (convert the image to raster), but I could not find one in my search. Is there such a thing? Thanks again. c ----- Original Message ----- From: "Goyo" <goy...@gm...> To: "Christopher Kuhlman" <cku...@vb...> Cc: "matplotlib-users" <mat...@li...> Sent: Saturday, March 22, 2014 4:11:08 PM Subject: Re: [Matplotlib-users] how to reduce the file size of plots generated with matplotlib 2014-03-22 20:23 GMT+01:00 Christopher Kuhlman <cku...@vb...>: [...] > For example, most recently, I am plotting 3 data sets; each data set has about 90,000 points. If I plot all three sets in one PDF figure, the file size is over 2MB. > This seems absurd to me. I used R plotting for many years (again, my own homegrown code, for 6 years) and never had this issue, and I was making these kinds of plots/figures. > > I thought it may be a vector/raster issue, but the following web page says that PDF are generated as vector image, which, to my understanding (which could be wrong), is the more compact format. > http://matplotlib.org/faq/usage_faq.html [...] Roughly speaking, size of vector files depend on the number of points while size of raster files depends on the number of pixels. For your use case (many points, small images) raster output should be more compact. Goyo |
From: Andrea G. <and...@gm...> - 2014-03-22 20:18:21
|
On 22 March 2014 20:23, Christopher Kuhlman wrote: > Hello: > > I use matplotlib to generate x-y data plots; i.e., 2-D plots. The problem > is that the output files (the PDF files containing plots that are generated > with matplotlib) are huge. I can generate files that are 100's of KB or > even MBs. This seems absurd to me. These file sizes cause programs that > use them to come to a grinding halt. My goal is to reduce the plot files > that I produce with matplotlib. Details follow. > > > ---------- > > I use matplotlib from EPD. > Enthought Canopy Python 2.7.3 | 64-bit | (default, Aug 8 2013, 05:37:06) > > Matplotlib version: > >>> print matplotlib.__version__ > 1.3.0 > > OS: > I'm using Mac OS X Version 10.8.4. > > ---------- > > I use a home-grown code whose starting point was an example code on > matplotlib website. > > My relevant imports are: > > import numpy > import scipy > import pylab > import matplotlib.pyplot as plt > import matplotlib > > My plotting code lines are: > > > ## PDF. > outfile = "basefile" + ".pdf" > ## pylab.savefig(outfile, bbox_inches=0) > pylab.savefig(outfile,bbox_inches='tight') > > > ---------- > > My PDF files contain simple plots which consist of (a) data points only, > (b) lines between data points (data points not plotted), or (c) both data > points and lines. > > I have a consistent problem in that the files produced have sizes that > seem way too big. > For example, most recently, I am plotting 3 data sets; each data set has > about 90,000 points. If I plot all three sets in one PDF figure, the file > size is over 2MB. > There is no way ever that a human eye (or the computer screen) is going to distinguish or even see 90,000 points on a standard line-plot. Especially if you reduce it to a 3 inch by 3 inch graph. You may want to downscale/interpolate your data to a more manageable set of points and try again. I'm no expert of the PDF side of things, but I agree with Goyo that raster files may give you smaller file sizes. > This seems absurd to me. I used R plotting for many years (again, my own > homegrown code, for 6 years) and never had this issue, and I was making > these kinds of plots/figures. > > I thought it may be a vector/raster issue, but the following web page says > that PDF are generated as vector image, which, to my understanding (which > could be wrong), is the more compact format. > http://matplotlib.org/faq/usage_faq.html > > Is there a command I can use to reduce the file size? Since I am using > these in reports and publications, the figures are almost always less than > 3 inches by 3 inches in size; i.e., I do not have issues about taking a > raster figure and trying to blow it up. So I am not concerned about > pixelation problems that occur when an image is increased in size. > > Thank you very much. > > c > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > -- Andrea. "Imagination Is The Only Weapon In The War Against Reality." http://www.infinity77.net # ------------------------------------------------------------- # def ask_mailing_list_support(email): if mention_platform_and_version() and include_sample_app(): send_message(email) else: install_malware() erase_hard_drives() # ------------------------------------------------------------- # |