The metacyc database

PD Karp, M Riley, SM Paley… - Nucleic acids …, 2002 - academic.oup.com
… This article describes recent enhancements to MetaCyc, and how to access the database. …
We compare MetaCyc to the KEGG database to provide users with a sense of the relative …

The MetaCyc database of metabolic pathways and enzymes-a 2019 update

R Caspi, R Billington, IM Keseler, A Kothari… - Nucleic acids …, 2020 - academic.oup.com
… In past papers in the database issue of Nucleic Acids Research we described the MetaCyc
database together with the BioCyc PGDB collection (6). As of 2017, SRI International has …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

R Caspi, T Altman, K Dreher, CA Fulcher… - Nucleic acids …, 2012 - academic.oup.com
The metabolic pathways and enzymes in MetaCyc are … , MetaCyc is used as a reference
database for the PathoLogic … of the Pathway Tools software (2) to computationally predict the

The ecocyc and metacyc databases

PD Karp, M Riley, M Saier, IT Paulsen… - Nucleic acids …, 2000 - academic.oup.com
MetaCyc employs the same database schema as does EcoCyc. It aims to provide … The
MetaCyc data reside within the same software environment as used for EcoCyc: the Pathway Tools…

The MetaCyc database of metabolic pathways and enzymes

R Caspi, R Billington, CA Fulcher… - Nucleic acids …, 2018 - academic.oup.com
… -specific Pathway/Genome Databases (PGDBs), which are available in the BioCyc (https://…
update on the developments in MetaCyc during the past two years, including the expansion …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

R Caspi, R Billington, L Ferrer, H Foerster… - Nucleic acids …, 2016 - academic.oup.com
The BioCyc website offers a variety of tools … MetaCyc and BioCyc during the last two years,
including addition of Gibbs free energy values for compounds and reactions; redesign of the

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

R Caspi, H Foerster, CA Fulcher, P Kaipa… - Nucleic acids …, 2007 - academic.oup.com
the content of the MetaCyc database. We have added more than 400 new pathways, an
increase of 57%, bringing the … of MetaCyc, which was released on 15 August 2007). In addition, …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

R Caspi, T Altman, R Billington, K Dreher… - Nucleic acids …, 2014 - academic.oup.com
The MetaCyc database (MetaCyc.org) is a comprehensive and freely accessible database
describing … , MetaCyc can be used as a reference database for the PathoLogic component of …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

R Caspi, T Altman, JM Dale, K Dreher… - Nucleic acids …, 2010 - academic.oup.com
The MetaCyc database (MetaCyc.org) is a comprehensive and … The pathways in MetaCyc
are experimentally determined, small-molecule metabolic pathways and are curated from the

MetaCyc: a multiorganism database of metabolic pathways and enzymes

CJ Krieger, P Zhang, LA Mueller, A Wang… - Nucleic acids …, 2004 - academic.oup.com
… This paper describes the recent enhancements to MetaCyc and the software, and how to …
As the database content in MetaCyc grows, the better MetaCyc will serve as a reference DB for …