Logical development of the cell ontology

TF Meehan, AM Masci, A Abdulla, LG Cowell… - BMC …, 2011 - Springer
… We have revised and extended the hematopoietic cell branch of the CL following a normalized
approach in which computable definitions (sometimes called "logical definitions" or "cross…

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

AD Diehl, TF Meehan, YM Bradford, MH Brush… - Journal of biomedical …, 2016 - Springer
Cell Ontology (CL) is an OBO Foundry candidate ontology covering the domain of canonical,
natural biological cell … CL has undergone multiple rounds of revision and expansion, most …

[HTML][HTML] Hematopoietic cell types: prototype for a revised cell ontology

AD Diehl, AD Augustine, JA Blake, LG Cowell… - Journal of biomedical …, 2011 - Elsevier
… of the hematopoietic cells in the Cell Ontology. In the first stage, which is now complete,
we revised current terms and added new terms so that all hematopoietic cell type terms now …

[PDF][PDF] Revising the Cell Ontology.

TF Meehan, CJ Mungall, AD Diehl - ICBO, 2011 - ceur-ws.org
… Here we describe our improvements in the representation of cell types in the Cell Ontology
that enhances its use in data annotation and integration. By implementing these changes, the …

An ontology for cell types

J Bard, SY Rhee, M Ashburner - Genome biology, 2005 - Springer
Ontology [14] provides a cell type node that shares some of the organizing principles of our
cell ontology, but it is limited to those cell … organism-independent ontology of cell types based …

Evaluation of the Cell Ontology (CL)

L Cowell - Nature Precedings, 2009 - nature.com
… nature and extent of the revisions required by this ontology. … a small master ontology along
with a separate cell ontology for … The other possibility is to link the cell ontology to an ontology

On the ontology based representation of cell lines

M Ganzinger, S He, K Breuhahn, P Knaup - PLoS One, 2012 - journals.plos.org
… on cell line-related aspects and create a basic ontology structure … ontology is by no means
limited to such research networks. In fact, it is a generic ontology that can be used for other cell

RIMBO-An Ontology for Model Revision Databases

F Kronström, AH Gower, IA Tiukova… - … Conference on Discovery …, 2023 - Springer
revisions need to be systematically recorded. We present RIMBO (Revisions for Improvements
of Models in Biology Ontology), … Cell types and processes in cells can be found in the Cell

Hematopoietic Cell Types: Prototype for a Revised Cell Ontology

A Diehl - Nature Precedings, 2009 - nature.com
cell lines, immortal or otherwise, although the Cell Ontology may … cell cultures, although
the Cell Ontology may be used to describe the resulting cells if they correspond to an in vivo cell

[HTML][HTML] The ontology of the gene ontology

B Smith, J Williams, SK Steffen - AMIA Annual Symposium …, 2003 - ncbi.nlm.nih.gov
cell isa cell ”, we mean that every eukaryotic cell is a cell. … to determine a revised upper-level
ontology for GO in which … the roles of GO’s central ontological notions (including the various …