[HTML][HTML] Hematopoietic cell types: prototype for a revised cell ontology

AD Diehl, AD Augustine, JA Blake, LG Cowell… - Journal of biomedical …, 2011 - Elsevier
… In the first stage, which is now complete, we revised … the ontology for the hematopoietic
cells, we have eliminated the multiple inheritance via the artifactual high-level terms such as “cell

Hematopoietic Cell Types: Prototype for a Revised Cell Ontology

A Diehl - Nature Precedings, 2009 - nature.com
cell cultures, although the Cell Ontology may be used to describe the resulting cells if they
correspond to an in vivo cell type… workshop on immune cell types within a modified CL and …

Hematopoietic Cell Types: Prototype for a Revised Cell Ontology

AM Masci, B Pulendran, T Meehan… - Nature …, 2009 - nature.com
… in certain areas of the ontology, and hematopoietic cell types in particular have been …
revisions and examine the process as an example for the future development of the Cell Ontology

An ontology for representing hematologic malignancies: the cancer cell ontology

LM Serra, WD Duncan, AD Diehl - BMC bioinformatics, 2019 - Springer
cell types with special attention to hematopoietic cell types. [6, 7] The CL links to other
ontologies … flowCL tool, which will be modified to match cell types to corresponding entities in the …

Logical development of the cell ontology

TF Meehan, AM Masci, A Abdulla, LG Cowell… - BMC …, 2011 - Springer
… We have revised and extended the hematopoietic cell branch of the CL following a normalized
approach in which computable definitions (sometimes called "logical definitions" or "cross…

Towards a pragmatic definition of cell type

T Lubiana, HI Nakaya - 2021 - lubianat.github.io
… here that a cell type should represent any class of cell that (1) is … four classes of cell types:
sensu stricto cell types, archetypes, … that go into a cell type definition using ontologies, we can …

An improved ontological representation of dendritic cells as a paradigm for all cell types

AM Masci, CN Arighi, AD Diehl, AE Lieberman… - BMC …, 2009 - Springer
… All other lineage relationships, such as that between hematopoietic stem cells and common
… and to use a reasoner to assess consequences of the revision on the DC-CL hierarchy. Thus…

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

AD Diehl, TF Meehan, YM Bradford, MH Brush… - Journal of biomedical …, 2016 - Springer
… Since its inception in 2005, the CL has undergone multiple rounds of revision and … of
hematopoietic cells in the ontology [2–4]. Originally, the CL was designed to include cell types from …

Cell type discovery and representation in the era of high-content single cell phenotyping

T Bakken, L Cowell, BD Aevermann, M Novotny… - BMC …, 2017 - Springer
… reference for cell type representation, the Cell Ontology has … new paradigm for a
comprehensive revision of the entire CL. … of well-defined hematopoietic cell populations by the …

Ontology based molecular signatures for immune cell types via gene expression analysis

TF Meehan, NA Vasilevsky, CJ Mungall, DS Dougall… - BMC …, 2013 - Springer
… Class II components in the myeloid branch of hematopoietic cells. Literature review confirms
this role of B … The continuously updated source file for the CL ontology can be found at the …