User profiles for Filipe Liu
 | Filipe LiuArgonne National Laboratory Verified email at anl.gov Cited by 640 |
MEMOTE for standardized genome-scale metabolic model testing
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants …
For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now being …
genome-scale metabolic models based on annotated microbial or plant genomes. Now being …
ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction
Since the release of ModelSEED in 2010, the systems biology research community has
used the ModelSEED genome-scale metabolic model reconstruction pipeline to build over …
used the ModelSEED genome-scale metabolic model reconstruction pipeline to build over …
Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate
Background One of the European Union directives indicates that 10% of all fuels must be bio-synthesized
by 2020. In this regard, biobutanol—natively produced by clostridial strains—…
by 2020. In this regard, biobutanol—natively produced by clostridial strains—…
Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions
Spontaneous reactions between metabolites are often neglected in favor of emphasizing
enzyme-catalyzed chemistry because spontaneous reaction rates are assumed to be …
enzyme-catalyzed chemistry because spontaneous reaction rates are assumed to be …
A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum.
A better understanding of the genetic and metabolic mechanisms that confer stress resistance
and tolerance in plants is key to engineering new crops through advanced breeding …
and tolerance in plants is key to engineering new crops through advanced breeding …
TranSyT, an innovative framework for identifying transport systems
Motivation The importance and rate of development of genome-scale metabolic models
have been growing for the last few years, increasing the demand for software solutions that …
have been growing for the last few years, increasing the demand for software solutions that …
TranSyT, an innovative framework for identifying transport systems
The importance and rate of development of genome-scale metabolic models have been
growing for the last years, increasing the demand for software solutions that automate several …
growing for the last years, increasing the demand for software solutions that automate several …
Development and application of efficient pathway enumeration algorithms for metabolic engineering applications
Metabolic Engineering (ME) aims to design microbial cell factories towards the production of
valuable compounds. In this endeavor, one important task relates to the search for the most …
valuable compounds. In this endeavor, one important task relates to the search for the most …
Computational tools for pathway optimization towards metabolic engineering applications
FAW Liu - 2013 - search.proquest.com
Metabolic Engineering targets the microorganism's cellular metabolism to design new
strains with an industrial purpose. Applications of these metabolic manipulations in …
strains with an industrial purpose. Applications of these metabolic manipulations in …