User profiles for Deyou Zheng

Deyou Zheng, Ph.D.

Albert Einstein College of Medicine
Verified email at einsteinmed.org
Cited by 24063

Distinct factors control histone variant H3. 3 localization at specific genomic regions

…, DR Higgs, IM Cristea, FD Urnov, D Zheng… - Cell, 2010 - cell.com
The incorporation of histone H3 variants has been implicated in the epigenetic memory of
cellular state. Using genome editing with zinc-finger nucleases to tag endogenous H3.3, we …

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

…, ZD Zhang, U Karaöz, L Barrera, R Stuart, D Zheng… - nature, 2007 - nature.com
We report the generation and analysis of functional data from multiple, diverse experiments
performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE …

[HTML][HTML] Glucocorticoid receptor confers resistance to antiandrogens by bypassing androgen receptor blockade

…, N Shah, L Cai, E Efstathiou, C Logothetis, D Zheng… - Cell, 2013 - cell.com
The treatment of advanced prostate cancer has been transformed by novel antiandrogen
therapies such as enzalutamide. Here, we identify induction of glucocorticoid receptor (GR) …

What is a gene, post-ENCODE? History and updated definition

MB Gerstein, C Bruce, JS Rozowsky, D Zheng… - Genome …, 2007 - genome.cshlp.org
While sequencing of the human genome surprised us with how many protein-coding genes
there are, it did not fundamentally change our perspective on what a gene is. In contrast, the …

Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice

…, DS Oristian, L Polak, M Kadaja, A Asare, D Zheng… - Nature, 2015 - nature.com
Adult stem cells occur in niches that balance self-renewal with lineage selection and
progression during tissue homeostasis. Following injury, culture or transplantation, stem cells …

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

D Zheng, A Frankish, R Baertsch, P Kapranov… - Genome …, 2007 - genome.cshlp.org
Arising from either retrotransposition or genomic duplication of functional genes, pseudogenes
are “genomic fossils” valuable for exploring the dynamics and evolution of genes and …

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors

…, KH Huberman, LX Qin, A Viale, S Singer, D Zheng… - Nature …, 2014 - nature.com
Malignant peripheral nerve sheath tumors (MPNSTs) represent a group of highly aggressive
soft-tissue sarcomas that may occur sporadically, in association with neurofibromatosis type …

Androgen receptor signaling regulates DNA repair in prostate cancers

…, PJ Iaquinta, VK Arora, WF Yen, L Cai, D Zheng… - Cancer discovery, 2013 - AACR
We demonstrate that the androgen receptor (AR) regulates a transcriptional program of
DNA repair genes that promotes prostate cancer radioresistance, providing a potential …

Phase separation drives aberrant chromatin looping and cancer development

…, SD Byrum, L Cai, AJ Tackett, D Zheng… - Nature, 2021 - nature.com
The development of cancer is intimately associated with genetic abnormalities that target
proteins with intrinsically disordered regions (IDRs). In human haematological malignancies, …

ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss

…, I Sirota, BS Carver, J Wongvipat, HI Scher, D Zheng… - Nature medicine, 2013 - nature.com
Studies of ETS-mediated prostate oncogenesis have been hampered by a lack of suitable
experimental systems. Here we describe a new conditional mouse model that shows robust, …