Automated high-dimensional flow cytometric data analysis

S Pyne, X Hu, K Wang, E Rossin… - Proceedings of the …, 2009 - National Acad Sciences
… for modeling high-dimensional cytometric data directly, … concept in statistics or in modeling
flow cytometric data (5–9)… models ideally suited for directly modeling flow cytometric data, (ii) …

The end of gating? An introduction to automated analysis of high dimensional cytometry data

F Mair, FJ Hartmann, D Mrdjen… - European journal of …, 2016 - Wiley Online Library
… century ago, flow cytometry has been a major tool for single-cell analysis, fueling advances
… multidimensional flow cytometry data. The first reports on automated cytometry data analysis

Computational flow cytometry: helping to make sense of high-dimensional immunology data

Y Saeys, S Van Gassen, BN Lambrecht - Nature Reviews Immunology, 2016 - nature.com
flow cytometry analysis: visualization of high-dimensional cytometry data and the automated
… an in-depth overview of visualization methods for high-dimensional cytometry data analysis. …

Analyzing high-dimensional cytometry data using FlowSOM

K Quintelier, A Couckuyt, A Emmaneel, J Aerts… - Nature protocols, 2021 - nature.com
… The field is therefore slowly moving toward more automated … in the field of computational
flow cytometry, in such a way that … Downstream statistical analysis will identify these deviations, …

immunoClust—An automated analysis pipeline for the identification of immunophenotypic signatures in highdimensional cytometric datasets

T Sörensen, S Baumgart, P Durek, A Grützkau… - Cytometry Part …, 2015 - Wiley Online Library
… and automate the analysis of high-dimensional cytometric datasets. As a prerequisite for
interpretation of such data, … Flow cytometry (FC) offers a rapid quantification of multidimensional …

Algorithmic tools for mining high-dimensional cytometry data

C Chester, HT Maecker - The Journal of Immunology, 2015 - journals.aai.org
… methods to analyze cytometry data. Most existing algorithms for flow cytometry data analysis
… tools for analyzing CyTOF data: viSNE and automatic classification of cellular expression by …

Current trends in flow cytometry automated data analysis software

M Cheung, JJ Campbell, L Whitby, RJ Thomas… - Cytometry Part …, 2021 - Wiley Online Library
… tools in discovery mode is especially notable in facilitating the interpretation of high
dimensional (>30) data, as the data can be reduced and visualized in two dimensions. These tools …

Automated high-dimensional flow cytometric data analysis

S Pyne, X Hu, K Wang, E Rossin, TI Lin, L Maier… - … Molecular Biology: 14th …, 2010 - Springer
analysis. It thus facilitates application of flow cytometry to new biological and clinical
problems… To facilitate pipelining with standard bioinformatic applications such as high-dimensional

How to prepare spectral flow cytometry datasets for high dimensional data analysis: a practical workflow

H den Braanker, M Bongenaar, E Lubberts - Frontiers in immunology, 2021 - frontiersin.org
… dataset (FR-FCM-Z3WR) are used to demonstrate the workflow step by step, providing any
researcher the tools to apply automated analysis on their own spectral flow cytometry data. R …

Making the most of highdimensional cytometry data

FMD Marsh‐Wakefield, AJ Mitchell… - … and Cell Biology, 2021 - Wiley Online Library
… Both mass and spectral flow cytometry have led to an … basic concepts in high-dimensional
data analysis and how it can … a serious issue when using automated analyses. Humans can …