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Plasma cell-free RNA signatures of inflammatory syndromes in children. Proc Natl Acad Sci U S A. 2024 Sep 10; 121(37):e2403897121.
Loy CJ, Servellita V, Sotomayor-Gonzalez A, Bliss A, Lenz JS, Belcher E, Suslovic W, Nguyen J, Williams ME, Oseguera M, Gardiner MA, P.E.M.K.D.R.G., C.H.A.R.M.S. the Study Group, Choi JH, Hsiao HM, Wang H, Kim J, Shimizu C, Tremoulet AH, Delaney M, DeBiasi RL, Rostad CA, Burns JC, Chiu CY, De Vlaminck I. PMID: 39240972.
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PubMed Mentions:
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Clinical Features and Outcomes of Pediatric and Adult Patients Hospitalized for Coronavirus Disease 2019: A Comparison Across Age Strata. Open Forum Infect Dis. 2024 Aug; 11(8):ofae443.
Li GX, Gopchandani K, Brazer N, Tippett A, Choi C, Hsiao HM, Oseguera M, Foresythe A, Bhattacharya S, Servellita V, Sotomayor Gonzalez A, Spinler JK, Gonzalez MD, Gulick D, Kraft C, Kasinathan V, Wang YFW, Dien Bard J, Chen PY, Flores-Vazquez J, Odom John AR, Planet PJ, Devaraj S, Annapragada AV, Luna RA, Chiu CY, Rostad CA. PMID: 39183814; PMCID: PMC11342389.
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PubMed Mentions:
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Outcomes in solid organ transplant recipients receiving organs from a donor with Fusarium solani species complex meningitis. Transpl Infect Dis. 2024 Jul 16; e14331.
Griffin IS, Smith DJ, Annambhotla P, Gold JAW, Ostrosky-Zeichner L, Kauffman CA, Gade L, Litvintseva A, Friedman DZ, Nishio Lucar AG, Parpia TC, Lieberman J, Bujan J, Corkrean J, Divatia MK, Grimes K, Lin J, Mobley C, Schwartz MR, Hannawi B, Malilay A, O'Boye A, Lysne J, Subramani MV, Heckmann H, Servellita V, Chiu C, Basavaraju SV. PMID: 39012471.
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PubMed Mentions: Fields:
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Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Central Nervous System Infections: Advances and Challenges. Mol Diagn Ther. 2024 Jul 11.
Su LD, Chiu CY, Gaston D, Hogan CA, Miller S, Simon DW, Thakur KT, Yang S, Piantadosi A. PMID: 38992308.
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PubMed Mentions: Fields:
Translation:
Humans
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Plasma Cell-free RNA Signatures of Inflammatory Syndromes in Children. medRxiv. 2024 Mar 08.
Loy CJ, Servellita V, Sotomayor-Gonzalez A, Bliss A, Lenz J, Belcher E, Suslovic W, Nguyen J, Williams ME, Oseguera M, Gardiner MA, Pediatric Emergency Medicine Kawasaki Disease Research Group (PEMKDRG), CHARMS Study Group, Choi JH, Hsiao HM, Wang H, Kim J, Shimizu C, Tremoulet A, Delaney M, DeBiasi RL, Rostad CA, Burns JC, Chiu CY, Vlaminck I. PMID: 38496479; PMCID: PMC10942512.
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PubMed Mentions:
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Previous exposure to Spike-providing parental strains confers neutralizing immunity to XBB lineage and other SARS-CoV-2 recombinants in the context of vaccination. Emerg Microbes Infect. 2023 Dec; 12(2):2270071.
Suryawanshi RK, Taha TY, McCavitt-Malvido M, Silva I, Khalid MM, Syed AM, Chen IP, Saldhi P, Sreekumar B, Montano M, Foresythe K, Tabata T, Kumar GR, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Kojima N, Arellanor T, Bussanich A, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Wang Y, Ghazarian S, Davis G, Rodriguez D, Doudna J, Spraggon L, Chiu CY, Ott M. PMID: 37869789; PMCID: PMC10619466.
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PubMed Mentions: Fields:
Translation:
HumansCellsPHPublic Health
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Severe Neuroinvasive West Nile Virus in Association With Anti-CD20 Monotherapy for Multiple Sclerosis. Neurol Neuroimmunol Neuroinflamm. 2023 09; 10(5).
Thebault S, Gandelman S, Lane C, Kim EJ, Pileggi C, Zuroff L, Yamashita LD, Schindler MK, Chiu C, Wilson MR, Berger JR, Markowitz C, Bar-Or A, Fuller R, Brandstadter R, Pruitt AA, Jacobs DA. PMID: 37562975; PMCID: PMC10414775.
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Translation:
HumansCells
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Transmission of yellow fever vaccine virus through blood transfusion and organ transplantation in the USA in 2021: report of an investigation. Lancet Microbe. 2023 09; 4(9):e711-e721.
Gould CV, Free RJ, Bhatnagar J, Soto RA, Royer TL, Maley WR, Moss S, Berk MA, Craig-Shapiro R, Kodiyanplakkal RPL, Westblade LF, Muthukumar T, Puius YA, Raina A, Hadi A, Gyure KA, Trief D, Pereira M, Kuehnert MJ, Ballen V, Kessler DA, Dailey K, Omura C, Doan T, Miller S, Wilson MR, Lehman JA, Ritter JM, Lee E, Silva-Flannery L, Reagan-Steiner S, Velez JO, Laven JJ, Fitzpatrick KA, Panella A, Davis EH, Hughes HR, Brault AC, St George K, Dean AB, Ackelsberg J, Basavaraju SV, Chiu CY, Staples JE, Yellow Fever Vaccine Virus Transplant and Transfusion Investigation Team. PMID: 37544313; PMCID: PMC11089990.
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PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Viral load quantitation at the point-of-care with shaken digital droplet RT-LAMP. Lab Chip. 2023 07 25; 23(15):3479-3486.
Weisgerber DW, Langer K, Servellita V, Xu P, Chiu CY, Abate AR. PMID: 37431299; PMCID: PMC10368152.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Complement Factor I Gene Variant as a Treatable Cause of Recurrent Aseptic Neutrophilic Meningitis: A Case Report. Neurol Neuroimmunol Neuroinflamm. 2023 09; 10(5).
Rolfes M, Harroud A, Zorn KC, Tubati A, Omura C, Kurtz K, Matloubian M, Berger A, Chiu CY, Wilson MR, Ramachandran PS. PMID: 37339889; PMCID: PMC10282980.
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PubMed Mentions: Fields:
Translation:
Humans
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Association of Culturable-Virus Detection and Household Transmission of SARS-CoV-2, California and Tennessee, 2020-2022. J Infect Dis. 2023 06 15; 227(12):1343-1347.
Deyoe JE, Kelly JD, Grijalva CG, Bonenfant G, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Hagen MB, Saydah S, Abedi GR, Goldberg SA, Tassetto M, Zhang A, Donohue KC, Davidson MC, Sanchez RD, Djomaleu M, Mathur S, Shak JR, Deeks SG, Peluso MJ, Chiu CY, Zhu Y, Halasa NB, Chappell JD, Mellis A, Reed C, Andino R, Martin JN, Zhou B, Talbot HK, Midgley CM, Rolfes MA. PMID: 36705269; PMCID: PMC10266938.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases. Nat Microbiol. 2023 08; 8(8):1495-1507.
Haddock NL, Barkal LJ, Ram-Mohan N, Kaber G, Chiu CY, Bhatt AS, Yang S, Bollyky PL. PMID: 37308590; PMCID: PMC10911932.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Nucleic acid biomarkers of immune response and cell and tissue damage in children with COVID-19 and MIS-C. Cell Rep Med. 2023 06 20; 4(6):101034.
Loy CJ, Sotomayor-Gonzalez A, Servellita V, Nguyen J, Lenz J, Bhattacharya S, Williams ME, Cheng AP, Bliss A, Saldhi P, Brazer N, Streithorst J, Suslovic W, Hsieh CJ, Bahar B, Wood N, Foresythe A, Gliwa A, Bhakta K, Perez MA, Hussaini L, Anderson EJ, Chahroudi A, Delaney M, Butte AJ, DeBiasi RL, Rostad CA, De Vlaminck I, Chiu CY. PMID: 37279751; PMCID: PMC10121104.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance. Viruses. 2023 04 21; 15(4).
Orf GS, Olivo A, Harris B, Weiss SL, Achari A, Yu G, Federman S, Mbanya D, James L, Mampunza S, Chiu CY, Rodgers MA, Cloherty GA, Berg MG. PMID: 37113001; PMCID: PMC10145552.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Powassan Virus Infection Detected by Metagenomic Next-Generation Sequencing, Ohio, USA. Emerg Infect Dis. 2023 04; 29(4):838-841.
Farrington M, Elenz J, Ginsberg M, Chiu CY, Miller S, Pangonis SF. PMID: 36958034; PMCID: PMC10045675.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Adeno-associated virus type 2 in US children with acute severe hepatitis. Nature. 2023 May; 617(7961):574-580.
Servellita V, Sotomayor Gonzalez A, Lamson DM, Foresythe A, Huh HJ, Bazinet AL, Bergman NH, Bull RL, Garcia KY, Goodrich JS, Lovett SP, Parker K, Radune D, Hatada A, Pan CY, Rizzo K, Bertumen JB, Morales C, Oluniyi PE, Nguyen J, Tan J, Stryke D, Jaber R, Leslie MT, Lyons Z, Hedman HD, Parashar U, Sullivan M, Wroblewski K, Oberste MS, Tate JE, Baker JM, Sugerman D, Potts C, Lu X, Chhabra P, Pediatric Hepatitis of Unknown Etiology Working Group, Ingram LA, Shiau H, Britt W, Gutierrez Sanchez LH, Ciric C, Rostad CA, Vinjé J, Kirking HL, Wadford DA, Raborn RT, St George K, Chiu CY. PMID: 36996871; PMCID: PMC10170441.
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PubMed Mentions:
24 Fields:
Translation:
HumansCells
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Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans. Virus Evol. 2023; 9(1):vead018.
Orf GS, Perez LJ, Meyer TV, Luk KC, Forberg K, Rodgers MA, Hadji A, James L, Mampunza S, Achari A, Yu G, Federman S, Chiu CY, McArthur CA, Cloherty GA, Berg MG. PMID: 37025159; PMCID: PMC10072187.
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PubMed Mentions:
2
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Longitudinal comparison of the developing gut virome in infants and their mothers. Cell Host Microbe. 2023 02 08; 31(2):187-198.e3.
Walters WA, Granados AC, Ley C, Federman S, Stryke D, Santos Y, Haggerty T, Sotomayor-Gonzalez A, Servellita V, Ley RE, Parsonnet J, Chiu CY. PMID: 36758519; PMCID: PMC9950819.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Transfusion-Transmitted Cache Valley Virus Infection in a Kidney Transplant Recipient With Meningoencephalitis. Clin Infect Dis. 2023 02 08; 76(3):e1320-e1327.
Al-Heeti O, Wu EL, Ison MG, Saluja RK, Ramsey G, Matkovic E, Ha K, Hall S, Banach B, Wilson MR, Miller S, Chiu CY, McCabe M, Bari C, Zimler RA, Babiker H, Freeman D, Popovitch J, Annambhotla P, Lehman JA, Fitzpatrick K, Velez JO, Davis EH, Hughes HR, Panella A, Brault A, Staples JE, Gould CV, Tanna S. PMID: 35883256; PMCID: PMC9880244.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Successful Treatment of Balamuthia mandrillaris Granulomatous Amebic Encephalitis with Nitroxoline. Emerg Infect Dis. 2023 01; 29(1):197-201.
Spottiswoode N, Pet D, Kim A, Gruenberg K, Shah M, Ramachandran A, Laurie MT, Zia M, Fouassier C, Boutros CL, Lu R, Zhang Y, Servellita V, Bollen A, Chiu CY, Wilson MR, Valdivia L, DeRisi JL. PMID: 36573629; PMCID: PMC9796214.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimals
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SARS-CoV-2 Spike triggers barrier dysfunction and vascular leak via integrins and TGF-β signaling. Nat Commun. 2022 Dec 09; 13(1):7630.
Biering SB, Gomes de Sousa FT, Tjang LV, Pahmeier F, Zhu C, Ruan R, Blanc SF, Patel TS, Worthington CM, Glasner DR, Castillo-Rojas B, Servellita V, Lo NTN, Wong MP, Warnes CM, Sandoval DR, Clausen TM, Santos YA, Fox DM, Ortega V, Näär AM, Baric RS, Stanley SA, Aguilar HC, Esko JD, Chiu CY, Pak JE, Beatty PR, Harris E. PMID: 36494335; PMCID: PMC9734751.
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PubMed Mentions:
19 Fields:
Translation:
HumansCells
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Neutralizing Immunity Induced Against the Omicron BA.1 and BA.2 Variants in Vaccine Breakthrough Infections. J Infect Dis. 2022 11 11; 226(10):1688-1698.
Brazer N, Morris MK, Servellita V, Anglin K, Saldhi P, Garcia-Knight M, Bethancourt S, Sotomayor-Gonzalez A, Wang B, Foresythe A, Nguyen J, Gliwa AS, Pineda-Ramirez J, Sanchez RD, Zhang Y, Ott M, Wadford DA, Andino R, Kelly JD, Hanson C, Chiu CY. PMID: 36134603; PMCID: PMC9619439.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Magnitude and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission: A Longitudinal Cohort Study. Clin Infect Dis. 2022 10 03; 75(Suppl 2):S193-S204.
Kelly JD, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Goldberg SA, Tassetto M, Zhang A, Donohue K, Davidson MC, Romero M, Diaz Sanchez R, Djomaleu M, Mathur S, Chen JY, Forman CA, Servellita V, Montejano RD, Shak JR, Rutherford GW, Deeks SG, Abedi GR, Rolfes MA, Saydah S, Briggs-Hagen M, Peluso MJ, Chiu C, Midgley CM, Andino R, Martin JN. PMID: 35788827; PMCID: PMC9278251.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study. PLoS Pathog. 2022 09; 18(9):e1010802.
Garcia-Knight M, Anglin K, Tassetto M, Lu S, Zhang A, Goldberg SA, Catching A, Davidson MC, Shak JR, Romero M, Pineda-Ramirez J, Diaz-Sanchez R, Rugart P, Donohue K, Massachi J, Sans HM, Djomaleu M, Mathur S, Servellita V, McIlwain D, Gaudiliere B, Chen J, Martinez EO, Tavs JM, Bronstone G, Weiss J, Watson JT, Briggs-Hagen M, Abedi GR, Rutherford GW, Deeks SG, Chiu C, Saydah S, Peluso MJ, Midgley CM, Martin JN, Andino R, Kelly JD. PMID: 36095030; PMCID: PMC9499220.
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PubMed Mentions:
22 Fields:
Translation:
HumansCellsPHPublic Health
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Contact-Tracing Outcomes Among Household Contacts of Fully Vaccinated Coronavirus Disease 2019 (COVID-19) Patients: San Francisco, California, 29 January-2 July 2021. Clin Infect Dis. 2022 08 24; 75(1):e267-e275.
Sachdev DD, Chew Ng R, Sankaran M, Ernst A, Hernandez KT, Servellita V, Sotomayor-Gonzalez A, Stoltey J, Cohen SE, Nguyen TQ, Chiu CY, Philip S. PMID: 34928340; PMCID: PMC8755335.
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PubMed Mentions:
8 Fields:
Translation:
HumansCellsPHPublic Health
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Author Correction: Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets. NPJ Vaccines. 2022 Aug 20; 7(1):99.
Kim IJ, Lanthier PA, Clark MJ, De La Barrera RA, Tighe MP, Szaba FM, Travis KL, Low-Beer TC, Cookenham TS, Lanzer KG, Bernacki DT, Johnson LL, Schneck AA, Ross CN, Tardif SD, Layne-Colon D, Mdaki SD, Dick EJ, Chuba C, Gonzalez O, Brasky KM, Dutton J, Rutherford JN, Coffey LL, Singapuri A, Martin CSS, Chiu CY, Thomas SJ, Modjarrad K, Patterson JL, Blackman MA. PMID: 35987764; PMCID: PMC9392767.
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PubMed Mentions:
1
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COVID-19 in vaccinated versus unvaccinated hematologic malignancy patients. Transpl Infect Dis. 2022 Dec; 24(6):e13835.
DeVoe C, Pandey S, Shariff D, Arora S, Henrich TJ, Yokoe DS, Langelier CR, Servellita V, Chiu C, Miller S, Babik JM, Chin-Hong P, Fung M. PMID: 35426225; PMCID: PMC9115335.
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PubMed Mentions:
2 Fields:
Translation:
HumansPHPublic Health
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An intranasal ASO therapeutic targeting SARS-CoV-2. Nat Commun. 2022 08 03; 13(1):4503.
Zhu C, Lee JY, Woo JZ, Xu L, Nguyenla X, Yamashiro LH, Ji F, Biering SB, Van Dis E, Gonzalez F, Fox D, Wehri E, Rustagi A, Pinsky BA, Schaletzky J, Blish CA, Chiu C, Harris E, Sadreyev RI, Stanley S, Kauppinen S, Rouskin S, Näär AM. PMID: 35922434; PMCID: PMC9349213.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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A diagnostic classifier for gene expression-based identification of early Lyme disease. Commun Med (Lond). 2022; 2:92.
Servellita V, Bouquet J, Rebman A, Yang T, Samayoa E, Miller S, Stone M, Lanteri M, Busch M, Tang P, Morshed M, Soloski MJ, Aucott J, Chiu CY. PMID: 35879995; PMCID: PMC9306241.
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PubMed Mentions:
4
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Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections. Genome Med. 2022 07 12; 14(1):74.
Serpa PH, Deng X, Abdelghany M, Crawford E, Malcolm K, Caldera S, Fung M, McGeever A, Kalantar KL, Lyden A, Ghale R, Deiss T, Neff N, Miller SA, Doernberg SB, Chiu CY, DeRisi JL, Calfee CS, Langelier CR. PMID: 35818068; PMCID: PMC9275031.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme. J Clin Microbiol. 2022 07 20; 60(7):e0026122.
Fasching CL, Servellita V, McKay B, Nagesh V, Broughton JP, Sotomayor-Gonzalez A, Wang B, Brazer N, Reyes K, Streithorst J, Deraney RN, Stanfield E, Hendriks CG, Fung B, Miller S, Ching J, Chen JS, Chiu CY. PMID: 35766492; PMCID: PMC9297821.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination. Nature. 2022 07; 607(7918):351-355.
Suryawanshi RK, Chen IP, Ma T, Syed AM, Brazer N, Saldhi P, Simoneau CR, Ciling A, Khalid MM, Sreekumar B, Chen PY, Kumar GR, Montano M, Gascon R, Tsou CL, Garcia-Knight MA, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Silva I, Milbes B, Kojima N, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Soveg FW, George AF, Fang X, Maishan M, Matthay M, Morris MK, Wadford D, Hanson C, Greene WC, Andino R, Spraggon L, Roan NR, Chiu CY, Doudna JA, Ott M. PMID: 35584773; PMCID: PMC9279157.
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Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nat Methods. 2022 04; 19(4):374-380.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. PMID: 35396471; PMCID: PMC9467803.
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PubMed Mentions:
15 Fields:
Translation:
HumansCellsPHPublic Health
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Neutralizing immunity in vaccine breakthrough infections from the SARS-CoV-2 Omicron and Delta variants. Cell. 2022 04 28; 185(9):1539-1548.e5.
Servellita V, Syed AM, Morris MK, Brazer N, Saldhi P, Garcia-Knight M, Sreekumar B, Khalid MM, Ciling A, Chen PY, Kumar GR, Gliwa AS, Nguyen J, Sotomayor-Gonzalez A, Zhang Y, Frias E, Prostko J, Hackett J, Andino R, Wadford DA, Hanson C, Doudna J, Ott M, Chiu CY. PMID: 35429436; PMCID: PMC8930394.
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PubMed Mentions:
79 Fields:
Translation:
HumansCells
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Individualized Constellation of Killer Cell Immunoglobulin-Like Receptors and Cognate HLA Class I Ligands that Controls Natural Killer Cell Antiviral Immunity Predisposes COVID-19. Front Genet. 2022; 13:845474.
Maruthamuthu S, Rajalingam K, Kaur N, Morvan MG, Soto J, Lee N, Kong D, Hu Z, Reyes K, Ng D, Butte AJ, Chiu C, Rajalingam R. PMID: 35273641; PMCID: PMC8902362.
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PubMed Mentions:
10
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The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters. PLoS Pathog. 2022 02; 18(2):e1009914.
Carroll T, Fox D, van Doremalen N, Ball E, Morris MK, Sotomayor-Gonzalez A, Servellita V, Rustagi A, Yinda CK, Fritts L, Port JR, Ma ZM, Holbrook MG, Schulz J, Blish CA, Hanson C, Chiu CY, Munster V, Stanley S, Miller CJ. PMID: 35143587; PMCID: PMC8865701.
View in:
PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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Limited Cross-Variant Immunity after Infection with the SARS-CoV-2 Omicron Variant Without Vaccination. medRxiv. 2022 Feb 09.
Suryawanshi RK, Chen IP, Ma T, Syed AM, Brazer N, Saldhi P, Simoneau CR, Ciling A, Khalid MM, Sreekumar B, Chen PY, Kumar GR, Montano M, Garcia-Knight MA, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Silva I, Milbes B, Kojima N, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Soveg FW, George AF, Fang X, Maishan M, Matthay M, Greene WC, Andino R, Spraggon L, Roan NR, Chiu CY, Doudna J, Ott M. PMID: 35075459; PMCID: PMC8786226.
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PubMed Mentions:
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Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets. NPJ Vaccines. 2022 Jan 27; 7(1):9.
Kim IJ, Lanthier PA, Clark MJ, De La Barrera RA, Tighe MP, Szaba FM, Travis KL, Low-Beer TC, Cookenham TS, Lanzer KG, Bernacki DT, Johnson LL, Schneck AA, Ross CN, Tardif SD, Layne-Colon D, Mdaki SD, Dick EJ, Chuba C, Gonzalez O, Brasky KM, Dutton J, Rutherford JN, Coffey LL, Singapuri A, Martin CSS, Chiu CY, Thomas SJ, Modjarrad K, Patterson JL, Blackman MA. PMID: 35087081; PMCID: PMC8795414.
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PubMed Mentions:
11
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Detection of SARS-CoV-2 variants by Abbott molecular, antigen, and serological tests. J Clin Virol. 2022 02; 147:105080.
Rodgers MA, Olivo A, Harris BJ, Lark C, Luo X, Berg MG, Meyer TV, Mohaimani A, Orf GS, Goldstein Y, Fox AS, Hirschhorn J, Glen WB, Nolte F, Landay A, Jennings C, Moy J, Servellita V, Chiu C, Batra R, Snell LB, Nebbia G, Douthwaite S, Tanuri A, Singh L, de Oliveira T, Ahouidi A, Mboup S, Cloherty GA. PMID: 35086043; PMCID: PMC8770247.
View in:
PubMed Mentions:
18 Fields:
Translation:
HumansCells
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Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California. Nat Microbiol. 2022 02; 7(2):277-288.
Servellita V, Morris MK, Sotomayor-Gonzalez A, Gliwa AS, Torres E, Brazer N, Zhou A, Hernandez KT, Sankaran M, Wang B, Wong D, Wang C, Zhang Y, Reyes KR, Glasner D, Deng X, Streithorst J, Miller S, Frias E, Rodgers M, Cloherty G, Hackett J, Hanson C, Wadford D, Philip S, Topper S, Sachdev D, Chiu CY. PMID: 35013591.
View in:
PubMed Mentions:
20 Fields:
Translation:
HumansCellsPHPublic Health
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The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis. Clin Chem. 2021 12 30; 68(1):115-124.
Miller S, Chiu C. PMID: 34969106.
View in:
PubMed Mentions:
40 Fields:
Translation:
Humans
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A Rare Bird: Diagnosis of Psittacosis Meningitis by Clinical Metagenomic Next-Generation Sequencing. Open Forum Infect Dis. 2021 Dec; 8(12):ofab555.
Davar K, Wilson MR, Miller S, Chiu CY, Vijayan T. PMID: 34934772; PMCID: PMC8683260.
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PubMed Mentions:
2
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Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid. JAMA Neurol. 2021 11 01; 78(11):1355-1366.
Gu W, Rauschecker AM, Hsu E, Zorn KC, Sucu Y, Federman S, Gopez A, Arevalo S, Sample HA, Talevich E, Nguyen ED, Gottschall M, Nourbakhsh B, Gold CA, Cree BAC, Douglas VC, Richie MB, Shah MP, Josephson SA, Gelfand JM, Miller S, Wang L, Tihan T, DeRisi JL, Chiu CY, Wilson MR. PMID: 34515766; PMCID: PMC8438621.
View in:
PubMed Mentions:
7 Fields:
Translation:
Humans
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Author Correction: Pan-viral serology implicates enteroviruses in acute flaccid myelitis. Nat Med. 2021 Oct; 27(10):1849.
Schubert RD, Hawes IA, Ramachandran PS, Ramesh A, Crawford ED, Pak JE, Wu W, Cheung CK, O'Donovan BD, Tato CM, Lyden A, Tan M, Sit R, Sowa GM, Sample HA, Zorn KC, Banerji D, Khan LM, Bove R, Hauser SL, Gelfand AA, Johnson-Kerner BL, Nash K, Krishnamoorthy KS, Chitnis T, Ding JZ, McMillan HJ, Chiu CY, Briggs B, Glaser CA, Yen C, Chu V, Wadford DA, Dominguez SR, Ng TFF, Marine RL, Lopez AS, Nix WA, Soldatos A, Gorman MP, Benson L, Messacar K, Konopka-Anstadt JL, Oberste MS, DeRisi JL, Wilson MR. PMID: 34548659.
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The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters. bioRxiv. 2021 Aug 25.
Carroll T, Fox D, van Doremalen N, Ball E, Morris MK, Sotomayor-Gonzalez A, Servellita V, Rustagi A, Yinda CK, Fritts L, Port JR, Ma ZM, Holbrook M, Schulz J, Blish CA, Hanson C, Chiu CY, Munster V, Stanley S, Miller CJ. PMID: 34462750; PMCID: PMC8404898.
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SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. Sci Adv. 2021 Jul; 7(31).
Peluso MJ, Takahashi S, Hakim J, Kelly JD, Torres L, Iyer NS, Turcios K, Janson O, Munter SE, Thanh C, Donatelli J, Nixon CC, Hoh R, Tai V, Fehrman EA, Hernandez Y, Spinelli MA, Gandhi M, Palafox MA, Vallari A, Rodgers MA, Prostko J, Hackett J, Trinh L, Wrin T, Petropoulos CJ, Chiu CY, Norris PJ, DiGermanio C, Stone M, Busch MP, Elledge SK, Zhou XX, Wells JA, Shu A, Kurtz TW, Pak JE, Wu W, Burbelo PD, Cohen JI, Rutishauser RL, Martin JN, Deeks SG, Henrich TJ, Rodriguez-Barraquer I, Greenhouse B. PMID: 34330709; PMCID: PMC8324059.
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86 Fields:
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Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco. Clin Infect Dis. 2021 07 30; 73(Suppl 2):S127-S135.
Chamie G, Marquez C, Crawford E, Peng J, Petersen M, Schwab D, Schwab J, Martinez J, Jones D, Black D, Gandhi M, Kerkhoff AD, Jain V, Sergi F, Jacobo J, Rojas S, Tulier-Laiwa V, Gallardo-Brown T, Appa A, Chiu C, Rodgers M, Hackett J, CLIAhub Consortium, Kistler A, Hao S, Kamm J, Dynerman D, Batson J, Greenhouse B, DeRisi J, Havlir DV. PMID: 32821935; PMCID: PMC7499499.
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PubMed Mentions:
68 Fields:
Translation:
HumansCells
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Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri. BMC Biol. 2021 07 22; 19(1):142.
Herman EK, Greninger A, van der Giezen M, Ginger ML, Ramirez-Macias I, Miller HC, Morgan MJ, Tsaousis AD, Velle K, Vargová R, Záhonová K, Najle SR, MacIntyre G, Muller N, Wittwer M, Zysset-Burri DC, Eliáš M, Slamovits CH, Weirauch MT, Fritz-Laylin L, Marciano-Cabral F, Puzon GJ, Walsh T, Chiu C, Dacks JB. PMID: 34294116; PMCID: PMC8296547.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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Use of Metagenomic Next-Generation Sequencing to Identify Pathogens in Pediatric Osteoarticular Infections. Open Forum Infect Dis. 2021 Jul; 8(7):ofab346.
Ramchandar N, Burns J, Coufal NG, Pennock A, Briggs B, Stinnett R, Bradley J, Arnold J, Liu GY, Pring M, Upasani VV, Rickert K, Dimmock D, Chiu C, Farnaes L, Cannavino C. PMID: 34322569; PMCID: PMC8314938.
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9
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Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California. J Infect Dis. 2021 07 15; 224(2):207-217.
Villarino E, Deng X, Kemper CA, Jorden MA, Bonin B, Rudman SL, Han GS, Yu G, Wang C, Federman S, Bushnell B, CZB COVIDTracker Consortium, Wadford DA, Lin W, Tao Y, Paden CR, Bhatnagar J, MacCannell T, Tong S, Batson J, Chiu CY. PMID: 33893501; PMCID: PMC8135363.
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PubMed Mentions:
1 Fields:
Translation:
HumansCellsPHPublic Health
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In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Nature. 2021 08; 596(7870):103-108.
Chen RE, Winkler ES, Case JB, Aziati ID, Bricker TL, Joshi A, Darling TL, Ying B, Errico JM, Shrihari S, VanBlargan LA, Xie X, Gilchuk P, Zost SJ, Droit L, Liu Z, Stumpf S, Wang D, Handley SA, Stine WB, Shi PY, Davis-Gardner ME, Suthar MS, Knight MG, Andino R, Chiu CY, Ellebedy AH, Fremont DH, Whelan SPJ, Crowe JE, Purcell L, Corti D, Boon ACM, Diamond MS. PMID: 34153975; PMCID: PMC8349859.
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Connecting the Dots: Translating the Vaginal Microbiome Into a Drug. J Infect Dis. 2021 06 16; 223(12 Suppl 2):S296-S306.
Lagenaur LA, Hemmerling A, Chiu C, Miller S, Lee PP, Cohen CR, Parks TP. PMID: 33330916; PMCID: PMC8502429.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids. Genome Med. 2021 06 01; 13(1):98.
Gu W, Talevich E, Hsu E, Qi Z, Urisman A, Federman S, Gopez A, Arevalo S, Gottschall M, Liao L, Tung J, Chen L, Lim H, Ho C, Kasowski M, Oak J, Holmes BJ, Yeh I, Yu J, Wang L, Miller S, DeRisi JL, Prakash S, Simko J, Chiu CY. PMID: 34074327; PMCID: PMC8167833.
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PubMed Mentions:
11 Fields:
Translation:
Humans
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In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Res Sq. 2021 Apr 23.
Diamond M, Chen R, Winkler E, Case J, Aziati I, Bricker T, Joshi A, Darling T, Ying B, Errico J, Shrihari S, VanBlargan L, Xie X, Gilchuk P, Zost S, Droit L, Liu Z, Stumpf S, Wang D, Handley S, Stine W, Shi PY, Garcia-Knight M, Andino R, Chiu C, Ellebedy A, Fremont D, Whelan S, Crowe J, Purcell L, Corti D, Boon A. PMID: 34013259; PMCID: PMC8132254.
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Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant. Cell. 2021 06 24; 184(13):3426-3437.e8.
Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, Sotomayor-González A, Glasner DR, Reyes KR, Gliwa AS, Reddy NP, Sanchez San Martin C, Federman S, Cheng J, Balcerek J, Taylor J, Streithorst JA, Miller S, Sreekumar B, Chen PY, Schulze-Gahmen U, Taha TY, Hayashi JM, Simoneau CR, Kumar GR, McMahon S, Lidsky PV, Xiao Y, Hemarajata P, Green NM, Espinosa A, Kath C, Haw M, Bell J, Hacker JK, Hanson C, Wadford DA, Anaya C, Ferguson D, Frankino PA, Shivram H, Lareau LF, Wyman SK, Ott M, Andino R, Chiu CY. PMID: 33991487; PMCID: PMC8057738.
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PubMed Mentions:
298 Fields:
Translation:
HumansCells
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Pathologic Findings Associated With a Case of Acute Flaccid Myelitis. J Neuropathol Exp Neurol. 2021 Apr 16; 80(5):484-487.
Haddad AF, Hofmann JW, Oh T, Jacques L, Yu G, Chiu C, Nolan A, Strober J, Gupta N. PMID: 33870421.
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HumansCells
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Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. Cell. 2021 05 13; 184(10):2587-2594.e7.
Washington NL, Gangavarapu K, Zeller M, Bolze A, Cirulli ET, Schiabor Barrett KM, Larsen BB, Anderson C, White S, Cassens T, Jacobs S, Levan G, Nguyen J, Ramirez JM, Rivera-Garcia C, Sandoval E, Wang X, Wong D, Spencer E, Robles-Sikisaka R, Kurzban E, Hughes LD, Deng X, Wang C, Servellita V, Valentine H, De Hoff P, Seaver P, Sathe S, Gietzen K, Sickler B, Antico J, Hoon K, Liu J, Harding A, Bakhtar O, Basler T, Austin B, MacCannell D, Isaksson M, Febbo PG, Becker D, Laurent M, McDonald E, Yeo GW, Knight R, Laurent LC, de Feo E, Worobey M, Chiu CY, Suchard MA, Lu JT, Lee W, Andersen KG. PMID: 33861950; PMCID: PMC8009040.
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PubMed Mentions:
222 Fields:
Translation:
HumansCells
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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions. Nat Commun. 2021 03 12; 12(1):1660.
Butler D, Mozsary C, Meydan C, Foox J, Rosiene J, Shaiber A, Danko D, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, Ramlall V, Sholle ET, Schenck EJ, Westover CD, Hassan C, Ryon K, Young B, Bhattacharya C, Ng DL, Granados AC, Santos YA, Servellita V, Federman S, Ruggiero P, Fungtammasan A, Chin CS, Pearson NM, Langhorst BW, Tanner NA, Kim Y, Reeves JW, Hether TD, Warren SE, Bailey M, Gawrys J, Meleshko D, Xu D, Couto-Rodriguez M, Nagy-Szakal D, Barrows J, Wells H, O'Hara NB, Rosenfeld JA, Chen Y, Steel PAD, Shemesh AJ, Xiang J, Thierry-Mieg J, Thierry-Mieg D, Iftner A, Bezdan D, Sanchez E, Campion TR, Sipley J, Cong L, Craney A, Velu P, Melnick AM, Shapira S, Hajirasouliha I, Borczuk A, Iftner T, Salvatore M, Loda M, Westblade LF, Cushing M, Wu S, Levy S, Chiu C, Schwartz RE, Tatonetti N, Rennert H, Imielinski M, Mason CE. PMID: 33712587; PMCID: PMC7954844.
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PubMed Mentions:
117 Fields:
Translation:
HumansCellsPHPublic Health
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Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation. medRxiv. 2021 Mar 09.
Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, Sotomayor-González A, Glasner DR, Reyes KR, Gliwa AS, Reddy NP, Martin CSS, Federman S, Cheng J, Balcerek J, Taylor J, Streithorst JA, Miller S, Kumar GR, Sreekumar B, Chen PY, Schulze-Gahmen U, Taha TY, Hayashi J, Simoneau CR, McMahon S, Lidsky PV, Xiao Y, Hemarajata P, Green NM, Espinosa A, Kath C, Haw M, Bell J, Hacker JK, Hanson C, Wadford DA, Anaya C, Ferguson D, Lareau LF, Frankino PA, Shivram H, Wyman SK, Ott M, Andino R, Chiu CY. PMID: 33758899; PMCID: PMC7987058.
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PubMed Mentions:
6
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SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. medRxiv. 2021 Mar 05.
Peluso MJ, Takahashi S, Hakim J, Kelly JD, Torres L, Iyer NS, Turcios K, Janson O, Munter SE, Thanh C, Nixon CC, Hoh R, Tai V, Fehrman EA, Hernandez Y, Spinelli MA, Gandhi M, Palafox MA, Vallari A, Rodgers MA, Prostko J, Hackett J, Trinh L, Wrin T, Petroplolous CJ, Chiu CY, Norris PJ, DiGermanio C, Stone M, Busch MP, Elledge SK, Zhou XX, Wells JA, Shu A, Kurtz TW, Pak JE, Wu W, Burbelo PD, Cohen JI, Rutishauser RL, Martin JN, Deeks SG, Henrich TJ, Rodriguez-Barraquer I, Greenhouse B. PMID: 33688675; PMCID: PMC7941652.
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Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. medRxiv. 2021 Feb 07.
Washington NL, Gangavarapu K, Zeller M, Bolze A, Cirulli ET, Barrett KMS, Larsen BB, Anderson C, White S, Cassens T, Jacobs S, Levan G, Nguyen J, Ramirez JM, Rivera-Garcia C, Sandoval E, Wang X, Wong D, Spencer E, Robles-Sikisaka R, Kurzban E, Hughes LD, Deng X, Wang C, Servellita V, Valentine H, De Hoff P, Seaver P, Sathe S, Gietzen K, Sickler B, Antico J, Hoon K, Liu J, Harding A, Bakhtar O, Basler T, Austin B, Isaksson M, Febbo PG, Becker D, Laurent M, McDonald E, Yeo GW, Knight R, Laurent LC, de Feo E, Worobey M, Chiu C, Suchard MA, Lu JT, Lee W, Andersen KG. PMID: 33564780; PMCID: PMC7872373.
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A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood. Sci Adv. 2021 02; 7(6).
Ng DL, Granados AC, Santos YA, Servellita V, Goldgof GM, Meydan C, Sotomayor-Gonzalez A, Levine AG, Balcerek J, Han LM, Akagi N, Truong K, Neumann NM, Nguyen DN, Bapat SP, Cheng J, Martin CS, Federman S, Foox J, Gopez A, Li T, Chan R, Chu CS, Wabl CA, Gliwa AS, Reyes K, Pan CY, Guevara H, Wadford D, Miller S, Mason CE, Chiu CY. PMID: 33536218; PMCID: PMC7857687.
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PubMed Mentions:
48 Fields:
Translation:
HumansCells
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Cell-free DNA tissues of origin by methylation profiling reveals significant cell, tissue, and organ-specific injury related to COVID-19 severity. Med. 2021 04 09; 2(4):411-422.e5.
Cheng AP, Cheng MP, Gu W, Sesing Lenz J, Hsu E, Schurr E, Bourque G, Bourgey M, Ritz J, Marty FM, Chiu CY, Vinh DC, De Vlaminck I. PMID: 33521749; PMCID: PMC7836424.
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PubMed Mentions:
26 Fields:
Translation:
HumansCells
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Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification. Sci Rep. 2021 01 12; 11(1):780.
Vasudevan HN, Xu P, Servellita V, Miller S, Liu L, Gopez A, Chiu CY, Abate AR. PMID: 33436939; PMCID: PMC7804156.
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PubMed Mentions:
51 Fields:
Translation:
HumansCells
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Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel. Clin Infect Dis. 2020 12 31; 71(11):2976-2980.
Gu W, Deng X, Reyes K, Hsu E, Wang C, Sotomayor-Gonzalez A, Federman S, Bushnell B, Miller S, Chiu CY. PMID: 32436571; PMCID: PMC7314204.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility-San Francisco, California, 2020. Infect Control Hosp Epidemiol. 2021 10; 42(10):1173-1180.
Karmarkar EN, Blanco I, Amornkul PN, DuBois A, Deng X, Moonan PK, Rubenstein BL, Miller DA, Kennedy I, Yu J, Dauterman JP, Ongpin M, Hathaway W, Hoo L, Trammell S, Dosunmu EF, Yu G, Khwaja Z, Lu W, Talai NZ, Jain S, Louie JK, Philip SS, Federman S, Masinde G, Wadford DA, Bobba N, Stoltey J, Smith A, Epson E, Chiu CY, Bennett AS, Vasquez AM, Williams T. PMID: 33308357; PMCID: PMC8144818.
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PubMed Mentions:
12 Fields:
Translation:
HumansCellsPHPublic Health
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Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab. Emerg Infect Dis. 2021 01; 27(1).
Solomon IH, Ganesh VS, Yu G, Deng XD, Wilson MR, Miller S, Milligan TA, Mukerji SS, Mathewson A, Linxweiler J, Morse D, Ritter JM, Staples JE, Hughes H, Gould CV, Sabeti PC, Chiu CY, Piantadosi A. PMID: 33261720; PMCID: PMC7774567.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors. J Virol. 2020 11 23; 94(24).
Lemos D, Stuart JB, Louie W, Singapuri A, Ramírez AL, Watanabe J, Usachenko J, Keesler RI, Sanchez-San Martin C, Li T, Martyn C, Oliveira G, Saraf S, Grubaugh ND, Andersen KG, Thissen J, Allen J, Borucki M, Tsetsarkin KA, Pletnev AG, Chiu CY, Van Rompay KKA, Coffey LL. PMID: 32999034; PMCID: PMC7925200.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids. Nat Med. 2021 01; 27(1):115-124.
Gu W, Deng X, Lee M, Sucu YD, Arevalo S, Stryke D, Federman S, Gopez A, Reyes K, Zorn K, Sample H, Yu G, Ishpuniani G, Briggs B, Chow ED, Berger A, Wilson MR, Wang C, Hsu E, Miller S, DeRisi JL, Chiu CY. PMID: 33169017; PMCID: PMC9020267.
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PubMed Mentions:
226 Fields:
Translation:
HumansAnimalsCells
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Universal Polymerase Chain Reaction and Antibody Testing Demonstrate Little to No Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in a Rural Community. Open Forum Infect Dis. 2021 Jan; 8(1):ofaa531.
Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Duarte E, Hakim J, Turcios K, Vinden J, Janson O, Manglik A, Peluso MJ, Deeks SG, Henrich TJ, Torres L, Rodgers M, Hackett J, Chiu C, Havlir D, Greenhouse B. PMID: 34109255; PMCID: PMC7665736.
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PubMed Mentions:
8
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Rapid deployment of SARS-CoV-2 testing: The CLIAHUB. PLoS Pathog. 2020 10; 16(10):e1008966.
Crawford ED, Acosta I, Ahyong V, Anderson EC, Arevalo S, Asarnow D, Axelrod S, Ayscue P, Azimi CS, Azumaya CM, Bachl S, Bachmutsky I, Bhaduri A, Brown JB, Batson J, Behnert A, Boileau RM, Bollam SR, Bonny AR, Booth D, Borja MJB, Brown D, Buie B, Burnett CE, Byrnes LE, Cabral KA, Cabrera JP, Caldera S, Canales G, Castañeda GR, Chan AP, Chang CR, Charles-Orszag A, Cheung C, Chio U, Chow ED, Citron YR, Cohen A, Cohn LB, Chiu C, Cole MA, Conrad DN, Constantino A, Cote A, Crayton-Hall T, Darmanis S, Detweiler AM, Dial RL, Dong S, Duarte EM, Dynerman D, Egger R, Fanton A, Frumm SM, Fu BXH, Garcia VE, Garcia J, Gladkova C, Goldman M, Gomez-Sjoberg R, Gordon MG, Grove JCR, Gupta S, Haddjeri-Hopkins A, Hadley P, Haliburton J, Hao SL, Hartoularos G, Herrera N, Hilberg M, Ho KYE, Hoppe N, Hosseinzadeh S, Howard CJ, Hussmann JA, Hwang E, Ingebrigtsen D, Jackson JR, Jowhar ZM, Kain D, Kim JYS, Kistler A, Kreutzfeld O, Kulsuptrakul J, Kung AF, Langelier C, Laurie MT, Lee L, Leng K, Leon KE, Leonetti MD, Levan SR, Li S, Li AW, Liu J, Lubin HS, Lyden A, Mann J, Mann S, Margulis G, Marquez DM, Marsh BP, Martyn C, McCarthy EE, McGeever A, Merriman AF, Meyer LK, Miller S, Moore MK, Mowery CT, Mukhtar T, Mwakibete LL, Narez N, Neff NF, Osso LA, Oviedo D, Peng S, Phelps M, Phong K, Picard P, Pieper LM, Pincha N, Pisco AO, Pogson A, Pourmal S, Puccinelli RR, Puschnik AS, Rackaityte E, Raghavan P, Raghavan M, Reese J, Replogle JM, Retallack H, Reyes H, Rose D, Rosenberg MF, Sanchez-Guerrero E, Sattler SM, Savy L, See SK, Sellers KK, Serpa PH, Sheehy M, Sheu J, Silas S, Streithorst JA, Strickland J, Stryke D, Sunshine S, Suslow P, Sutanto R, Tamura S, Tan M, Tan J, Tang A, Tato CM, Taylor JC, Tenvooren I, Thompson EM, Thornborrow EC, Tse E, Tung T, Turner ML, Turner VS, Turnham RE, Turocy MJ, Vaidyanathan TV, Vainchtein ID, Vanaerschot M, Vazquez SE, Wandler AM, Wapniarski A, Webber JT, Weinberg ZY, Westbrook A, Wong AW, Wong E, Worthington G, Xie F, Xu A, Yamamoto T, Yang Y, Yarza F, Zaltsman Y, Zheng T, DeRisi JL. PMID: 33112933; PMCID: PMC7592773.
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PubMed Mentions:
12 Fields:
Translation:
HumansCellsPHPublic Health
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Gastrointestinal: COVID-19 related ischemic bowel disease. J Gastroenterol Hepatol. 2021 Apr; 36(4):850.
Chiu CY, Sarwal A, Mon AM, Tan YE, Shah V. PMID: 32985002.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens. Cell Rep Med. 2020 10 20; 1(7):100123.
Zamecnik CR, Rajan JV, Yamauchi KA, Mann SA, Loudermilk RP, Sowa GM, Zorn KC, Alvarenga BD, Gaebler C, Caskey M, Stone M, Norris PJ, Gu W, Chiu CY, Ng D, Byrnes JR, Zhou XX, Wells JA, Robbiani DF, Nussenzweig MC, DeRisi JL, Wilson MR. PMID: 32995758; PMCID: PMC7513813.
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PubMed Mentions:
50 Fields:
Translation:
HumansCells
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Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination. Sci Rep. 2020 09 21; 10(1):15392.
Tan SK, Granados AC, Bouquet J, Hoy-Schulz YE, Green L, Federman S, Stryke D, Haggerty TD, Ley C, Yeh MT, Jannat K, Maldonado YA, Andino R, Parsonnet J, Chiu CY. PMID: 32958861; PMCID: PMC7506025.
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PubMed Mentions:
4 Fields:
Translation:
HumansCellsPHPublic Health
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SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood. Nat Commun. 2020 09 17; 11(1):4698.
Ng DL, Goldgof GM, Shy BR, Levine AG, Balcerek J, Bapat SP, Prostko J, Rodgers M, Coller K, Pearce S, Franz S, Du L, Stone M, Pillai SK, Sotomayor-Gonzalez A, Servellita V, Martin CSS, Granados A, Glasner DR, Han LM, Truong K, Akagi N, Nguyen DN, Neumann NM, Qazi D, Hsu E, Gu W, Santos YA, Custer B, Green V, Williamson P, Hills NK, Lu CM, Whitman JD, Stramer SL, Wang C, Reyes K, Hakim JMC, Sujishi K, Alazzeh F, Pham L, Thornborrow E, Oon CY, Miller S, Kurtz T, Simmons G, Hackett J, Busch MP, Chiu CY. PMID: 32943630; PMCID: PMC7499171.
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PubMed Mentions:
123 Fields:
Translation:
HumansCellsPHPublic Health
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Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding. mSphere. 2020 09 16; 5(5).
Byrnes JR, Zhou XX, Lui I, Elledge SK, Glasgow JE, Lim SA, Loudermilk RP, Chiu CY, Wang TT, Wilson MR, Leung KK, Wells JA. PMID: 32938700; PMCID: PMC7494835.
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PubMed Mentions:
49 Fields:
Translation:
HumansCellsPHPublic Health
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Optimization and clinical validation of dual-target RT-LAMP for SARS-CoV-2. J Virol Methods. 2020 12; 286:113972.
Mohon AN, Oberding L, Hundt J, van Marle G, Pabbaraju K, Berenger BM, Lisboa L, Griener T, Czub M, Doolan C, Servellita V, Chiu CY, Greninger AL, Jerome KR, Pillai DR. PMID: 32941977; PMCID: PMC7490281.
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PubMed Mentions:
26 Fields:
Translation:
HumansCellsPHPublic Health
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Cryptic transmission of SARS-CoV-2 in Washington state. Science. 2020 10 30; 370(6516):571-575.
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, Giroux D, Han PD, Fay K, Frazar CD, Ilcisin M, Lacombe K, Lee J, Kiavand A, Richardson M, Sibley TR, Truong M, Wolf CR, Nickerson DA, Rieder MJ, Englund JA, Seattle Flu Study Investigators, Hadfield J, Hodcroft EB, Huddleston J, Moncla LH, Müller NF, Neher RA, Deng X, Gu W, Federman S, Chiu C, Duchin JS, Gautom R, Melly G, Hiatt B, Dykema P, Lindquist S, Queen K, Tao Y, Uehara A, Tong S, MacCannell D, Armstrong GL, Baird GS, Chu HY, Shendure J, Jerome KR. PMID: 32913002; PMCID: PMC7810035.
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PubMed Mentions:
172 Fields:
Translation:
HumansCellsPHPublic Health
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Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification. medRxiv. 2020 Sep 03.
Vasudevan H, Xu P, Servellita V, Miller S, Liu L, Gopez A, Chiu CY, Abate AR. PMID: 32908995; PMCID: PMC7480047.
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Evaluation of SARS-CoV-2 serology assays reveals a range of test performance. Nat Biotechnol. 2020 10; 38(10):1174-1183.
Whitman JD, Hiatt J, Mowery CT, Shy BR, Yu R, Yamamoto TN, Rathore U, Goldgof GM, Whitty C, Woo JM, Gallman AE, Miller TE, Levine AG, Nguyen DN, Bapat SP, Balcerek J, Bylsma SA, Lyons AM, Li S, Wong AW, Gillis-Buck EM, Steinhart ZB, Lee Y, Apathy R, Lipke MJ, Smith JA, Zheng T, Boothby IC, Isaza E, Chan J, Acenas DD, Lee J, Macrae TA, Kyaw TS, Wu D, Ng DL, Gu W, York VA, Eskandarian HA, Callaway PC, Warrier L, Moreno ME, Levan J, Torres L, Farrington LA, Loudermilk RP, Koshal K, Zorn KC, Garcia-Beltran WF, Yang D, Astudillo MG, Bernstein BE, Gelfand JA, Ryan ET, Charles RC, Iafrate AJ, Lennerz JK, Miller S, Chiu CY, Stramer SL, Wilson MR, Manglik A, Ye CJ, Krogan NJ, Anderson MS, Cyster JG, Ernst JD, Wu AHB, Lynch KL, Bern C, Hsu PD, Marson A. PMID: 32855547; PMCID: PMC7740072.
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PubMed Mentions:
155 Fields:
Translation:
HumansCellsPHPublic Health
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Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. EClinicalMedicine. 2020 Oct; 27:100518.
Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, Li LM, Chiu CY, Babik JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Castaneda G, CZB CLIAhub Consortium, Dadasovich RM, Davis J, Deng X, DeRisi JL, Detweiler AM, Federman S, Haliburton J, Hao S, Kerkhoff AD, Kumar GR, Malcolm KB, Mann SA, Martinez S, Mary RK, Mick E, Mwakibete L, Najafi N, Peluso MJ, Phelps M, Pisco AO, Ratnasiri K, Rubio LA, Sellas A, Sherwood KD, Sheu J, Spottiswoode N, Tan M, Yu G, Kangelaris KN, Langelier C. PMID: 32864588; PMCID: PMC7447618.
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PubMed Mentions:
43
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Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays. J Clin Microbiol. 2020 08 24; 58(9).
Fung B, Gopez A, Servellita V, Arevalo S, Ho C, Deucher A, Thornborrow E, Chiu C, Miller S. PMID: 32651238; PMCID: PMC7448668.
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PubMed Mentions:
50 Fields:
Translation:
HumansCellsPHPublic Health
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Universal PCR and antibody testing demonstrate little to no transmission of SARS-CoV-2 in a rural community. medRxiv. 2020 Aug 17.
Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Consortium C, Duarte E, Hakim J, Turcios K, Vinden J, Janson O, Manglik A, Peluso MJ, Deeks SG, Henrich TJ, Torres L, Rodgers M, Hackett J, Chiu C, Havlir D, Greenhouse B. PMID: 32839781; PMCID: PMC7444294.
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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies. Lancet Infect Dis. 2020 10; 20(10):e251-e260.
Bharucha T, Oeser C, Balloux F, Brown JR, Carbo EC, Charlett A, Chiu CY, Claas ECJ, de Goffau MC, de Vries JJC, Eloit M, Hopkins S, Huggett JF, MacCannell D, Morfopoulou S, Nath A, O'Sullivan DM, Reoma LB, Shaw LP, Sidorov I, Simner PJ, Van Tan L, Thomson EC, van Dorp L, Wilson MR, Breuer J, Field N. PMID: 32768390; PMCID: PMC7406238.
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PubMed Mentions:
26 Fields:
Translation:
Humans
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Cell-Free DNA in Blood Reveals Significant Cell, Tissue and Organ Specific injury and Predicts COVID-19 Severity. medRxiv. 2020 Jul 29.
Cheng AP, Cheng MP, Gu W, Lenz JS, Hsu E, Schurr E, Bourque G, Bourgey M, Ritz J, Marty F, Chiu CY, Vinh DC, Vlaminck I. PMID: 32766608; PMCID: PMC7402071.
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PubMed Mentions:
1
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Clinical outcomes and serologic response in solid organ transplant recipients with COVID-19: A case series from the United States. Am J Transplant. 2020 11; 20(11):3225-3233.
Fung M, Chiu CY, DeVoe C, Doernberg SB, Schwartz BS, Langelier C, Henrich TJ, Yokoe D, Davis J, Hays SR, Chandran S, Kukreja J, Ng D, Prostko J, Taylor R, Reyes K, Bainbridge E, Bond A, Chin-Hong P, Babik JM. PMID: 32476258; PMCID: PMC7300859.
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PubMed Mentions:
45 Fields:
Translation:
HumansCellsPHPublic Health
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SARS-CoV-2 Community Transmission During Shelter-in-Place in San Francisco. medRxiv. 2020 Jun 17; 2020.06.15.20132233.
Chamie CG, Marquez MC, Crawford CE, Peng PJ, Petersen PM, Schwab SD, Schwab SJ, Martinez MJ, Jones JD, Black BD, Gandhi GM, Kerkhoff KA, Jain JV, Sergi SF, Jacobo JJ, Rojas RS, Tulier-Laiwa TV, Gallardo-Brown GT, Appa AA, Chiu CC, Rodgers RM, Hackett HJ, Kistler KA, Hao HS, Kamm KJ, Dynerman DD, Batson BJ, Greenhouse GB, DeRisi DJ, Havlir HD. .
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Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science. 2020 07 31; 369(6503):582-587.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria NR, Wang C, Yu G, Bushnell B, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Masinde G, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. PMID: 32513865; PMCID: PMC7286545.
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PubMed Mentions:
162 Fields:
Translation:
HumansCellsPHPublic Health
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A SARS-CoV-2 serological assay to determine the presence of blocking antibodies that compete for human ACE2 binding. medRxiv. 2020 May 29.
Byrnes JR, Zhou XX, Lui I, Elledge SK, Glasgow JE, Lim SA, Loudermilk R, Chiu CY, Wilson MR, Leung KK, Wells JA. PMID: 32511506; PMCID: PMC7273274.
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PubMed Mentions:
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SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood from the San Francisco Bay Area. medRxiv. 2020 May 25.
Ng DL, Goldgof GM, Shy BR, Levine AG, Balcerek J, Bapat SP, Prostko J, Rodgers M, Coller K, Pearce S, Franz S, Du L, Stone M, Pillai SK, Sotomayor-Gonzalez A, Servellita V, Martin CSS, Granados A, Glasner DR, Han LM, Truong K, Akagi N, Nguyen DN, Neumann NM, Qazi D, Hsu E, Gu W, Santos YA, Custer B, Green V, Williamson P, Hills NK, Lu CM, Whitman JD, Stramer S, Wang C, Reyes K, Hakim JMC, Sujishi K, Alazzeh F, Pham L, Oon CY, Miller S, Kurtz T, Hackett J, Simmons G, Busch MP, Chiu CY. PMID: 32511477; PMCID: PMC7273245.
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PubMed Mentions:
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New Genomes from the Congo Basin Expand History of CRF01_AE Origin and Dissemination. AIDS Res Hum Retroviruses. 2020 07; 36(7):574-582.
Junqueira DM, Wilkinson E, Vallari A, Deng X, Achari A, Yu G, McArthur C, Kaptue L, Mbanya D, Chiu C, Cloherty GA, de Oliveira T, Rodgers MA. PMID: 32281388; PMCID: PMC7398440.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Test performance evaluation of SARS-CoV-2 serological assays. medRxiv. 2020 May 17.
Whitman JD, Hiatt J, Mowery CT, Shy BR, Yu R, Yamamoto TN, Rathore U, Goldgof GM, Whitty C, Woo JM, Gallman AE, Miller TE, Levine AG, Nguyen DN, Bapat SP, Balcerek J, Bylsma SA, Lyons AM, Li S, Wong AW, Gillis-Buck EM, Steinhart ZB, Lee Y, Apathy R, Lipke MJ, Smith JA, Zheng T, Boothby IC, Isaza E, Chan J, Acenas DD, Lee J, Macrae TA, Kyaw TS, Wu D, Ng DL, Gu W, York VA, Eskandarian HA, Callaway PC, Warrier L, Moreno ME, Levan J, Torres L, Farrington LA, Loudermilk R, Koshal K, Zorn KC, Garcia-Beltran WF, Yang D, Astudillo MG, Bernstein BE, Gelfand JA, Ryan ET, Charles RC, Iafrate AJ, Lennerz JK, Miller S, Chiu CY, Stramer SL, Wilson MR, Manglik A, Ye CJ, Krogan NJ, Anderson MS, Cyster JG, Ernst JD, Wu AHB, Lynch KL, Bern C, Hsu PD, Marson A. PMID: 32511497; PMCID: PMC7273265.
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PubMed Mentions:
21
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ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens. medRxiv. 2020 May 13; 2020.05.11.20092528.
Zamecnik ZC, Rajan RJ, Yamauchi YK, Mann MS, Sowa SG, Zorn ZK, Alvarenga AB, Stone SM, Norris NP, Gu GW, Chiu CC, DeRisi DJ, Wilson WM. .
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Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19. medRxiv. 2020 May 06.
Shah SJ, Barish PN, Prasad PA, Kistler AL, Neff N, Kamm J, Li LM, Chiu CY, Babick JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Davis JM, Castenada GD, Consortium C, Dadasovich RM, Deng X, DeRisi JL, Detweiler AM, Federman S, Haliburton JR, Hao SL, Kerkhoff AD, Kumar R, Malcolm K, Mann SA, Martinez SP, Marya R, Mick E, Mwakibete LL, Najafi N, Peluso MJ, Phelps MS, Pisco AO, Ratnasiri K, Rubio LA, Sellas AB, Sherwood KD, Sheu J, Spottiswoode N, Tan M, Yu G, Kangelaris KN, Langelier C. PMID: 32511488; PMCID: PMC7273256.
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PubMed Mentions:
2
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CRISPR-Cas12-based detection of SARS-CoV-2. Nat Biotechnol. 2020 Jul; 38(7):870-874.
Broughton JP, Deng X, Yu G, Fasching CL, Servellita V, Singh J, Miao X, Streithorst JA, Granados A, Sotomayor-Gonzalez A, Zorn K, Gopez A, Hsu E, Gu W, Miller S, Pan CY, Guevara H, Wadford DA, Chen JS, Chiu CY. PMID: 32300245; PMCID: PMC9107629.
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PubMed Mentions:
999 Fields:
Translation:
HumansCellsPHPublic Health
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Association of COVID-19 Infections in San Francisco in Early March 2020 with Travel to New York and Europe. medRxiv. 2020 Apr 07.
Gu W, Reyes K, Hsu E, Miller S, Chiu C. PMID: 32511617; PMCID: PMC7276044.
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PubMed Mentions:
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Cryptic transmission of SARS-CoV-2 in Washington State. medRxiv. 2020 Apr 06.
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, Giroux D, Han PD, Fay K, Frazar CD, Ilcisin M, Lacombe K, Lee J, Kiavand A, Richardson M, Sibley TR, Truong M, Wolf CR, Nickerson DA, Rieder MJ, Englund JA, Seattle Flu Study Investigators, Hadfield J, Hodcroft EB, Huddleston J, Moncla LH, Müller NF, Neher RA, Deng X, Gu W, Federman S, Chiu C, Duchin J, Gautom R, Melly G, Hiatt B, Dykema P, Lindquist S, Queen K, Tao Y, Uehara A, Tong S, MacCannell D, Armstrong GL, Baird GS, Chu HY, Shendure J, Jerome KR. PMID: 32511596; PMCID: PMC7276023.
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PubMed Mentions:
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A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage. medRxiv. 2020 Mar 30.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. PMID: 32511579; PMCID: PMC7276006.
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PubMed Mentions:
2
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Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay. medRxiv. 2020 Mar 27.
Broughton JP, Deng X, Yu G, Fasching CL, Singh J, Streithorst J, Granados A, Sotomayor-Gonzalez A, Zorn K, Gopez A, Hsu E, Gu W, Miller S, Pan CY, Guevara H, Wadford DA, Chen JS, Chiu CY. PMID: 32511449; PMCID: PMC7239074.
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PubMed Mentions:
3
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Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nat Microbiol. 2020 Mar; 5(3):525.
Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, Hackett JR, Chiu CY. PMID: 31965087; PMCID: PMC7608365.
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PubMed Mentions:
2 Fields:
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Human Tibroviruses: Commensals or Lethal Pathogens? Viruses. 2020 02 25; 12(3).
Kuhn JH, Pan H, Chiu CY, Stremlau M. PMID: 32106547; PMCID: PMC7150972.
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PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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Point-Counterpoint: Should We Be Performing Metagenomic Next-Generation Sequencing for Infectious Disease Diagnosis in the Clinical Laboratory? J Clin Microbiol. 2020 02 24; 58(3).
Miller S, Chiu C, Rodino KG, Miller MB. PMID: 31619533; PMCID: PMC7041574.
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PubMed Mentions:
34 Fields:
Translation:
Humans
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Exploratory analysis of the potential for advanced diagnostic testing to reduce healthcare expenditures of patients hospitalized with meningitis or encephalitis. PLoS One. 2020; 15(1):e0226895.
Fulton BD, Proudman DG, Sample HA, Gelfand JM, Chiu CY, DeRisi JL, Wilson MR. PMID: 31940319; PMCID: PMC6961903.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nat Microbiol. 2020 03; 5(3):443-454.
Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, R Hackett J, Chiu CY. PMID: 31932713; PMCID: PMC7047537.
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PubMed Mentions:
76 Fields:
Translation:
HumansCells
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236. The Comparative Utility Of Metagenomic Next-Generation Sequencing and Universal PCR for Pathogen Detection on Cerebrospinal Fluid: A Retrospective Analysis From a Tertiary Care Center. Open Forum Infectious Diseases. 2019 Oct 23; 6(Suppl 2):s134-s135.
Kerkhoff KA, Matzko MM, Chiu CC, Miller MS, Babik BJ. .
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Pan-viral serology implicates enteroviruses in acute flaccid myelitis. Nat Med. 2019 11; 25(11):1748-1752.
Schubert RD, Hawes IA, Ramachandran PS, Ramesh A, Crawford ED, Pak JE, Wu W, Cheung CK, O'Donovan BD, Tato CM, Lyden A, Tan M, Sit R, Sowa GM, Sample HA, Zorn KC, Banerji D, Khan LM, Bove R, Hauser SL, Gelfand AA, Johnson-Kerner BL, Nash K, Krishnamoorthy KS, Chitnis T, Ding JZ, McMillan HJ, Chiu CY, Briggs B, Glaser CA, Yen C, Chu V, Wadford DA, Dominguez SR, Ng TFF, Marine RL, Lopez AS, Nix WA, Soldatos A, Gorman MP, Benson L, Messacar K, Konopka-Anstadt JL, Oberste MS, DeRisi JL, Wilson MR. PMID: 31636453; PMCID: PMC6858576.
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PubMed Mentions:
50 Fields:
Translation:
HumansCells
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Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo. J Clin Microbiol. 2019 09; 57(9).
Li T, Mbala-Kingebeni P, Naccache SN, Thézé J, Bouquet J, Federman S, Somasekar S, Yu G, Sanchez-San Martin C, Achari A, Schneider BS, Rimoin AW, Rambaut A, Nsio J, Mulembakani P, Ahuka-Mundeke S, Kapetshi J, Pybus OG, Muyembe-Tamfum JJ, Chiu CY. PMID: 31315955; PMCID: PMC6711896.
View in:
PubMed Mentions:
11 Fields:
Translation:
HumansCellsPHPublic Health
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Acute Zika virus infection in an asymptomatic blood donor at the onset of the Puerto Rico epidemic. Transfusion. 2019 10; 59(10):3164-3170.
Saa P, Chiu C, Grimm K, Yu G, Benjamin RJ, Corash L, Stramer SL. PMID: 31407817; PMCID: PMC6785374.
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Gastroenteritis, Hepatitis, Encephalopathy, and Human Herpesvirus 6 Detection in an Immunocompetent Child: Benefits and Risks of Syndromic Multiplex Molecular Panel Testing. J Pediatr. 2019 09; 212:228-231.
Olson CA, Dominguez SR, Miller S, Chiu CY, Messacar K. PMID: 31208781; PMCID: PMC6707859.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. N Engl J Med. 2019 06 13; 380(24):2327-2340.
Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, DeRisi JL, Gelfand JM, Naccache SN, Bender J, Dien Bard J, Murkey J, Carlson M, Vespa PM, Vijayan T, Allyn PR, Campeau S, Humphries RM, Klausner JD, Ganzon CD, Memar F, Ocampo NA, Zimmermann LL, Cohen SH, Polage CR, DeBiasi RL, Haller B, Dallas R, Maron G, Hayden R, Messacar K, Dominguez SR, Miller S, Chiu CY. PMID: 31189036; PMCID: PMC6764751.
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PubMed Mentions:
374 Fields:
Translation:
HumansCTClinical Trials
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Clinical metagenomics. Nat Rev Genet. 2019 06; 20(6):341-355.
Chiu CY, Miller SA. PMID: 30918369; PMCID: PMC6858796.
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Human, Nonhuman Primate, and Bat Cells Are Broadly Susceptible to Tibrovirus Particle Cell Entry. Front Microbiol. 2019; 10:856.
Caì Y, Yú S, Jangra RK, Postnikova EN, Wada J, Tesh RB, Whelan SPJ, Lauck M, Wiley MR, Finch CL, Radoshitzky SR, O'Connor DH, Palacios G, Chandran K, Chiu CY, Kuhn JH. PMID: 31105663; PMCID: PMC6499107.
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PubMed Mentions:
7
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Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid. Genome Res. 2019 05; 29(5):831-842.
Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, DeBiasi R, Dominguez S, Chiu CY. PMID: 30992304; PMCID: PMC6499319.
View in:
PubMed Mentions:
245 Fields:
Translation:
HumansCells
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Severe Epididymo-Orchitis and Encephalitis Complicating Anti-PD-1 Therapy. Oncologist. 2019 07; 24(7):872-876.
Quach HT, Robbins CJ, Balko JM, Chiu CY, Miller S, Wilson MR, Nelson GE, Johnson DB. PMID: 30936376; PMCID: PMC6656444.
View in:
PubMed Mentions:
15 Fields:
Translation:
Humans
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Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing. PLoS One. 2019; 14(3):e0212193.
Bouquet J, Li T, Gardy JL, Kang X, Stevens S, Stevens J, VanNess M, Snell C, Potts J, Miller RR, Morshed M, McCabe M, Parker S, Uyaguari M, Tang P, Steiner T, Chan WS, De Souza AM, Mattman A, Patrick DM, Chiu CY. PMID: 30897114; PMCID: PMC6428308.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Single-molecule sequencing detection of N6-methyladenine in microbial reference materials. Nat Commun. 2019 02 04; 10(1):579.
McIntyre ABR, Alexander N, Grigorev K, Bezdan D, Sichtig H, Chiu CY, Mason CE. PMID: 30718479; PMCID: PMC6362088.
View in:
PubMed Mentions:
73 Fields:
Translation:
Cells
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A Child With Intermittent Headaches and Eosinophilic Meningitis. J Pediatric Infect Dis Soc. 2018 Dec 03; 7(4):355-357.
Saporta-Keating SR, Simões EAF, Yu G, Federman S, Mirsky D, Dominguez SR, Chiu CY, Messacar K. PMID: 29438532; PMCID: PMC6276032.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansAnimals
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Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults. Proc Natl Acad Sci U S A. 2018 12 26; 115(52):E12353-E12362.
Langelier C, Kalantar KL, Moazed F, Wilson MR, Crawford ED, Deiss T, Belzer A, Bolourchi S, Caldera S, Fung M, Jauregui A, Malcolm K, Lyden A, Khan L, Vessel K, Quan J, Zinter M, Chiu CY, Chow ED, Wilson J, Miller S, Matthay MA, Pollard KS, Christenson S, Calfee CS, DeRisi JL. PMID: 30482864; PMCID: PMC6310811.
View in:
PubMed Mentions:
160 Fields:
Translation:
HumansCells
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2563. Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Meningitis and Encephalitis. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s72-s72.
Wilson WM, Sample SH, Zorn ZK, Naccache NS, Miller MS, Chiu CC. .
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2291. A Real-Time Sequencing Approach for Simultaneous Metagenomic and Transcriptomic-Based Diagnosis of Infectious Diseases. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s679-s679.
Briggs BB, Federman FS, Deng DX, Gu GW, Yu YG, San Martin SC, Miller MS, Chiu CC. .
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617. Characterization and Development of the Infant Gut Virome: A STORK Study. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s225-s225.
Granados GA, Tan TS, Bouquet BJ, Chiu CC, Parsonnet PJ, Green GL. .
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Publisher Correction: Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Sci Rep. 2018 Oct 26; 8(1):16131.
Seferovic M, Sánchez-San Martín C, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, Aagaard KM, Chiu CY, Patterson JL. PMID: 30367092; PMCID: PMC6203817.
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PubMed Mentions:
3 Fields:
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Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection. Annu Rev Pathol. 2019 01 24; 14:319-338.
Gu W, Miller S, Chiu CY. PMID: 30355154; PMCID: PMC6345613.
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PubMed Mentions:
504 Fields:
Translation:
Humans
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Differentiation enhances Zika virus infection of neuronal brain cells. Sci Rep. 2018 09 28; 8(1):14543.
Sánchez-San Martín C, Li T, Bouquet J, Streithorst J, Yu G, Paranjpe A, Chiu CY. PMID: 30266962; PMCID: PMC6162312.
View in:
PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Identification of high-risk human papillomavirus and Rb/E2F pathway genomic alterations in mutually exclusive subsets of colorectal neuroendocrine carcinoma. Mod Pathol. 2019 02; 32(2):290-305.
Shamir ER, Devine WP, Pekmezci M, Umetsu SE, Krings G, Federman S, Cho SJ, Saunders TA, Jen KY, Bergsland E, Jones K, Kim GE, Kakar S, Chiu CY, Joseph NM. PMID: 30237525.
View in:
PubMed Mentions:
24 Fields:
Translation:
Humans
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Epidemiological and genomic characterization of community-acquired Clostridium difficile infections. BMC Infect Dis. 2018 Aug 31; 18(1):443.
Thornton CS, Rubin JE, Greninger AL, Peirano G, Chiu CY, Pillai DR. PMID: 30170546; PMCID: PMC6119286.
View in:
PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Miscarriage and stillbirth following maternal Zika virus infection in nonhuman primates. Nat Med. 2018 08; 24(8):1104-1107.
Dudley DM, Van Rompay KK, Coffey LL, Ardeshir A, Keesler RI, Bliss-Moreau E, Grigsby PL, Steinbach RJ, Hirsch AJ, MacAllister RP, Pecoraro HL, Colgin LM, Hodge T, Streblow DN, Tardif S, Patterson JL, Tamhankar M, Seferovic M, Aagaard KM, Martín CS, Chiu CY, Panganiban AT, Veazey RS, Wang X, Maness NJ, Gilbert MH, Bohm RP, Adams Waldorf KM, Gale M, Rajagopal L, Hotchkiss CE, Mohr EL, Capuano SV, Simmons HA, Mejia A, Friedrich TC, Golos TG, O'Connor DH. PMID: 29967348; PMCID: PMC6082723.
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PubMed Mentions:
56 Fields:
Translation:
AnimalsCells
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Acute Liver Failure of Indeterminate Etiology: A Comprehensive Systematic Approach by An Expert Committee to Establish Causality. Am J Gastroenterol. 2018 09; 113(9):1319.
Ganger DR, Rule J, Rakela J, Bass N, Reuben A, Stravitz RT, Sussman N, Larson AM, James L, Chiu C, Lee WM, Acute Liver Failure Study Group. PMID: 29946176; PMCID: PMC9252260.
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PubMed Mentions:
33 Fields:
Translation:
HumansCells
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Cutting-Edge Infectious Disease Diagnostics with CRISPR. Cell Host Microbe. 2018 06 13; 23(6):702-704.
Chiu C. PMID: 29902435; PMCID: PMC7105017.
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PubMed Mentions:
17 Fields:
Translation:
Cells
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Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico. Cell Host Microbe. 2018 06 13; 23(6):855-864.e7.
Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG. PMID: 29805095; PMCID: PMC6006413.
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PubMed Mentions:
51 Fields:
Translation:
HumansCellsPHPublic Health
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Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study. Mod Pathol. 2018 09; 31(9):1429-1441.
Sirohi D, Vaske C, Sanborn Z, Smith SC, Don MD, Lindsey KG, Federman S, Vankalakunti M, Koo J, Bose S, Peralta-Venturina M, Ziffle JV, Grenert JP, Miller S, Chiu C, Amin MB, Simko JP, Stohr BA, Luthringer DJ. PMID: 29765141.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Sci Rep. 2018 05 01; 8(1):6851.
Seferovic M, Sánchez-San Martín C, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, Aagaard KM, Chiu CY, Patterson JL. PMID: 29717225; PMCID: PMC5931554.
View in:
PubMed Mentions:
46 Fields:
Translation:
HumansAnimalsCells
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Taxonomy of the order Mononegavirales: update 2018. Arch Virol. 2018 Aug; 163(8):2283-2294.
Amarasinghe GK, Aréchiga Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Caì Y, Calisher CH, Campos Lawson C, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Echevarría JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiang D, Kityo R, Kobinger GP, Kondo H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Müller T, Mühlberger E, Ramírez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Paweska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither SJ, Song Q, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vázquez-Morón S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Yè G, Zhang YZ, Kuhn JH. PMID: 29637429; PMCID: PMC6076851.
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PubMed Mentions:
88 Fields:
Translation:
HumansAnimalsCells
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Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients. Am J Respir Crit Care Med. 2018 02 15; 197(4):524-528.
Langelier C, Zinter MS, Kalantar K, Yanik GA, Christenson S, O'Donovan B, White C, Wilson M, Sapru A, Dvorak CC, Miller S, Chiu CY, DeRisi JL. PMID: 28686513; PMCID: PMC5821905.
View in:
PubMed Mentions:
115 Fields:
Translation:
Humans
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Metagenomic Next-Generation Sequencing for Pathogen Detection and Identification. Advanced Techniques in Diagnostic Microbiology. 2018 Jan 1; 617-632.
Miller MS, Chiu CC. .
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Publisher Site Mentions:
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Nanopore DNA Sequencing and Genome Assembly on the International Space Station. Sci Rep. 2017 12 21; 7(1):18022.
Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, Stryke D, Somasekar S, Alexander N, Yu G, Mason CE, Burton AS. PMID: 29269933; PMCID: PMC5740133.
View in:
PubMed Mentions:
138 Fields:
Translation:
AnimalsCells
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Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection. Sci Rep. 2017 12 07; 7(1):17126.
Chiu CY, Sánchez-San Martín C, Bouquet J, Li T, Yagi S, Tamhankar M, Hodara VL, Parodi LM, Somasekar S, Yu G, Giavedoni LD, Tardif S, Patterson J. PMID: 29215081; PMCID: PMC5719425.
View in:
PubMed Mentions:
36 Fields:
Translation:
AnimalsCells
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A composite of exhaled LTB4 , LXA4 , FeNO, and FEV1 as an "asthma classification ratio" characterizes childhood asthma. Allergy. 2018 03; 73(3):627-634.
Chen LC, Tseng HM, Kuo ML, Chiu CY, Liao SL, Su KW, Tsai MH, Hua MC, Lai SH, Yao TC, Yeh KW, Wu AH, Huang JL, Huang SK. PMID: 28944471.
View in:
PubMed Mentions:
1 Fields:
Translation:
Humans
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Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing. J Pediatric Infect Dis Soc. 2017 Nov 24; 6(4):393-398.
Mongkolrattanothai K, Naccache SN, Bender JM, Samayoa E, Pham E, Yu G, Dien Bard J, Miller S, Aldrovandi G, Chiu CY. PMID: 28062553; PMCID: PMC6251619.
View in:
PubMed Mentions:
46 Fields:
Translation:
HumansCells
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Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing. Clin Infect Dis. 2017 Oct 16; 65(9):1477-1485.
Somasekar S, Lee D, Rule J, Naccache SN, Stone M, Busch MP, Sanders C, Lee WM, Chiu CY. PMID: 29020199; PMCID: PMC5848299.
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PubMed Mentions:
41 Fields:
Translation:
HumansCells
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Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016. Emerg Infect Dis. 2017 10; 23(10):1964-1968.
Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, Miller S, Klausner JD. PMID: 28930022; PMCID: PMC5621550.
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PubMed Mentions:
44 Fields:
Translation:
HumansCells
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Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen. Sci Rep. 2017 09 25; 7(1):12234.
Bouquet J, Melgar M, Swei A, Delwart E, Lane RS, Chiu CY. PMID: 28947798; PMCID: PMC5612965.
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PubMed Mentions:
24 Fields:
Translation:
AnimalsCells
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Upregulation of Human Endogenous Retrovirus-K Is Linked to Immunity and Inflammation in Pulmonary Arterial Hypertension. Circulation. 2017 Nov 14; 136(20):1920-1935.
Saito T, Miyagawa K, Chen SY, Tamosiuniene R, Wang L, Sharpe O, Samayoa E, Harada D, Moonen JAJ, Cao A, Chen PI, Hennigs JK, Gu M, Li CG, Leib RD, Li D, Adams CM, Del Rosario PA, Bill M, Haddad F, Montoya JG, Robinson WH, Fantl WJ, Nolan GP, Zamanian RT, Nicolls MR, Chiu CY, Ariza ME, Rabinovitch M. PMID: 28935667; PMCID: PMC5685911.
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PubMed Mentions:
40 Fields:
Translation:
HumansAnimalsCells
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Correction: Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa. PLoS Pathog. 2017 Sep; 13(9):e1006583.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 28880960; PMCID: PMC5589260.
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PubMed Mentions: Fields:
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The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease. Nat Med. 2017 Sep; 23(9):1080-1085.
Legoff J, Resche-Rigon M, Bouquet J, Robin M, Naccache SN, Mercier-Delarue S, Federman S, Samayoa E, Rousseau C, Piron P, Kapel N, Simon F, Socié G, Chiu CY. PMID: 28759053.
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PubMed Mentions:
74 Fields:
Translation:
HumansCells
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Hepatitis E Virus-Associated Meningoencephalitis in a Lung Transplant Recipient Diagnosed by Clinical Metagenomic Sequencing. Open Forum Infect Dis. 2017; 4(3):ofx121.
Murkey JA, Chew KW, Carlson M, Shannon CL, Sirohi D, Sample HA, Wilson MR, Vespa P, Humphries RM, Miller S, Klausner JD, Chiu CY. PMID: 28721353; PMCID: PMC5508774.
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PubMed Mentions:
35
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Establishment and cryptic transmission of Zika virus in Brazil and the Americas. Nature. 2017 06 15; 546(7658):406-410.
Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG. PMID: 28538727; PMCID: PMC5722632.
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PubMed Mentions:
289 Fields:
Translation:
HumansCellsPHPublic Health
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Establishment and characterization of an oral tongue squamous cell carcinoma cell line from a never-smoking patient. Oral Oncol. 2017 06; 69:1-10.
Wang SJ, Asthana S, van Zante A, Heaton CM, Phuchareon J, Stein L, Higuchi S, Kishimoto T, Chiu CY, Olshen AB, McCormick F, Tetsu O. PMID: 28559012; PMCID: PMC5479323.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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First Complete Genome Sequence of Corynebacterium riegelii. Genome Announc. 2017 Mar 30; 5(13).
Greninger AL, Streithorst J, Chiu CY, Miller S. PMID: 28360160; PMCID: PMC5374234.
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PubMed Mentions:
1
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A hospital-wide screening programme to control an outbreak of vancomycin-resistant enterococci in a large tertiary hospital in Hong Kong. Hong Kong Med J. 2017 Apr; 23(2):140-9.
Lai CK, Wong SY, Lee SS, Siu HK, Chiu CY, Tsang DN, Ip MP, Hung CT. PMID: 28232642.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansCellsPHPublic Health
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A mouse model of paralytic myelitis caused by enterovirus D68. PLoS Pathog. 2017 02; 13(2):e1006199.
Hixon AM, Yu G, Leser JS, Yagi S, Clarke P, Chiu CY, Tyler KL. PMID: 28231269; PMCID: PMC5322875.
View in:
PubMed Mentions:
82 Fields:
Translation:
AnimalsCells
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RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease. Clin Infect Dis. 2017 02 15; 64(4):476-481.
Bouquet J, Gardy JL, Brown S, Pfeil J, Miller RR, Morshed M, Avina-Zubieta A, Shojania K, McCabe M, Parker S, Uyaguari M, Federman S, Tang P, Steiner T, Otterstater M, Holt R, Moore R, Chiu CY, Patrick DM, Complex Chronic Disease Study Group. PMID: 28172519; PMCID: PMC5850034.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection. Arch Pathol Lab Med. 2017 Jun; 141(6):776-786.
Schlaberg R, Chiu CY, Miller S, Procop GW, Weinstock G, Professional Practice Committee and Committee on Laboratory Practices of the American Society for Mi, Microbiology Resource Committee of the College of American Pathologists. PMID: 28169558.
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PubMed Mentions:
241 Fields:
Translation:
Humans
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Beatrice Hill Virus Represents a Novel Species in the Genus Tibrovirus (Mononegavirales: Rhabdoviridae). Genome Announc. 2017 Jan 26; 5(4).
Wiley MR, Prieto K, Blasdell KR, Caì Y, Campos Lawson C, Walker PJ, Chiu CY, Palacios G, Kuhn JH. PMID: 28126935; PMCID: PMC5270694.
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PubMed Mentions:
3
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First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18, Previously Identified as CDC Eugonic Fermenter 4b Species. Genome Announc. 2016 Nov 10; 4(6).
Greninger AL, Streithorst J, Chiu CY, Miller S. PMID: 27834718; PMCID: PMC5105111.
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PubMed Mentions:
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Longitudinal investigation of nasopharyngeal methicillin-resistant Staphylococcus aureus colonization in early infancy: The PATCH birth cohort study. Clin Microbiol Infect. 2017 Feb; 23(2):121.e1-121.e7.
Tsai MH, Chiu CY, Shih HJ, Liao SL, Hua MC, Huang SH, Yao TC, Lai SH, Huang TS, Yeh KW, Chen LC, Su KW, Lim WH, Chang YJ, Chiang CH, Huang SY, Huang JL. PMID: 27793735.
View in:
PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Distinct Zika Virus Lineage in Salvador, Bahia, Brazil. Emerg Infect Dis. 2016 10; 22(10):1788-92.
Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY. PMID: 27448188; PMCID: PMC5038429.
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PubMed Mentions:
32 Fields:
Translation:
HumansCells
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Complete genome sequence of sequential Pandoraea apista isolates from the same cystic fibrosis patient supports a model of chronic colonization with in vivo strain evolution over time. Diagn Microbiol Infect Dis. 2017 Jan; 87(1):1-6.
Greninger AL, Streithorst J, Golden JA, Chiu CY, Miller S. PMID: 28336132.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing. J Clin Microbiol. 2016 09; 54(9):2348-53.
Sardi SI, Somasekar S, Naccache SN, Bandeira AC, Tauro LB, Campos GS, Chiu CY. PMID: 27413190; PMCID: PMC5005514.
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PubMed Mentions:
61 Fields:
Translation:
HumansCells
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Antibodies to the Novel Human Pegivirus 2 Are Associated with Active and Resolved Infections. J Clin Microbiol. 2016 08; 54(8):2023-30.
Coller KE, Berg MG, Frankel M, Forberg K, Surani R, Chiu CY, Hackett J, Dawson GJ. PMID: 27225404; PMCID: PMC4963515.
View in:
PubMed Mentions:
15 Fields:
Translation:
HumansCells
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Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case. Transfusion. 2016 06; 56(6 Pt 2):1560-8.
Stramer SL, Yu G, Herron R, Espinoza N, Foster GA, Naccache SN, Brodsky JP, Ong E, Linnen JM, Dyer N, Styer LM, Parker MM, Chiu CY. PMID: 27079968.
View in:
PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa. PLoS Pathog. 2016 Mar; 12(3):e1005503.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 26991269; PMCID: PMC4798281.
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PubMed Mentions:
1 Fields:
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Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Resistant to Fifth-Generation Cephalosporins Reveals Potential Non-mecA Mechanisms of Resistance. PLoS One. 2016; 11(2):e0149541.
Greninger AL, Chatterjee SS, Chan LC, Hamilton SM, Chambers HF, Chiu CY. PMID: 26890675; PMCID: PMC4758708.
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PubMed Mentions:
32 Fields:
Translation:
Cells
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Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease. mBio. 2016 Feb 12; 7(1):e00100-16.
Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY. PMID: 26873097; PMCID: PMC4791844.
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PubMed Mentions:
51 Fields:
Translation:
HumansAnimalsCells
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Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2016 Jan 11; 8(1):1.
Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY. PMID: 26750923; PMCID: PMC4707724.
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PubMed Mentions: Fields:
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Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection. PLoS Pathog. 2015 Dec; 11(12):e1005325.
Berg MG, Lee D, Coller K, Frankel M, Aronsohn A, Cheng K, Forberg K, Marcinkus M, Naccache SN, Dawson G, Brennan C, Jensen DM, Hackett J, Chiu CY. PMID: 26658760; PMCID: PMC4676677.
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PubMed Mentions:
47 Fields:
Translation:
HumansCells
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Balamuthia Mandrillaris Encephalitis Detected by Next Generation Sequencing of Cerebrospinal Fluid. Open Forum Infectious Diseases. 2015 Dec 9; 2(suppl_1).
Nomura NY, Greninger GA, Messacar MK, Dunnebacke DT, Naccache NS, Bouquet BJ, Mirsky MD, Press PC, Kleinschmidt-Demasters KB, Parker PS, Dominguez DS, Chiu CC. .
View in:
Publisher Site Mentions:
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Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2015 Dec 01; 7:113.
Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. PMID: 26620704; PMCID: PMC4665321.
View in:
PubMed Mentions:
64 Fields:
Translation:
HumansAnimals
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Acute Flaccid Myelitis of Unknown Etiology in California, 2012-2015. JAMA. 2015 Dec 22-29; 314(24):2663-71.
Van Haren K, Ayscue P, Waubant E, Clayton A, Sheriff H, Yagi S, Glenn-Finer R, Padilla T, Strober JB, Aldrovandi G, Wadford DA, Chiu CY, Xia D, Harriman K, Watt JP, Glaser CA. PMID: 26720027.
View in:
PubMed Mentions:
52 Fields:
Translation:
HumansCells
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Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity. PLoS One. 2015; 10(11):e0141723.
Luk KC, Berg MG, Naccache SN, Kabre B, Federman S, Mbanya D, Kaptué L, Chiu CY, Brennan CA, Hackett J. PMID: 26599538; PMCID: PMC4658132.
View in:
PubMed Mentions:
20 Fields:
Translation:
HumansCells
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med. 2015 Sep 29; 7:99.
Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY. PMID: 26416663; PMCID: PMC4587849.
View in:
PubMed Mentions:
244 Fields:
Translation:
HumansCells
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Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE. Genome Announc. 2015 Aug 27; 3(4).
Greninger AL, Cunningham G, Chiu CY, Miller S. PMID: 26316632; PMCID: PMC4551876.
View in:
PubMed Mentions:
1
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Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014. Emerg Infect Dis. 2015 Aug; 21(8):1409-13.
Chiu CY, Bres V, Yu G, Krysztof D, Naccache SN, Lee D, Pfeil J, Linnen JM, Stramer SL. PMID: 26196378; PMCID: PMC4517739.
View in:
PubMed Mentions:
18 Fields:
Translation:
HumansCells
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Draft Genome Sequence of Mycobacterium heraklionense Strain Davo. Genome Announc. 2015 Jul 23; 3(4).
Greninger AL, Cunningham G, Chiu CY, Miller S. PMID: 26205863; PMCID: PMC4513157.
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PubMed Mentions:
2
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Draft Genome Sequence of Mycobacterium elephantis Strain Lipa. Genome Announc. 2015 Jun 25; 3(3).
Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. PMID: 26112791; PMCID: PMC4481289.
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PubMed Mentions:
1
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Draft Genome Sequence of Mycobacterium arupense Strain GUC1. Genome Announc. 2015 Jun 11; 3(3).
Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. PMID: 26067970; PMCID: PMC4463534.
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PubMed Mentions:
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Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum. Genome Announc. 2015 Jun 11; 3(3).
Greninger AL, Cunningham G, Hsu ED, Yu JM, Chiu CY, Miller S. PMID: 26067960; PMCID: PMC4463524.
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PubMed Mentions:
5
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Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense. J Clin Microbiol. 2015 Jul; 53(7):2374-7.
Greninger AL, Langelier C, Cunningham G, Keh C, Melgar M, Chiu CY, Miller S. PMID: 25926490; PMCID: PMC4473206.
View in:
PubMed Mentions:
28 Fields:
Translation:
HumansCells
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Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies. Blood. 2015 Jun 11; 125(24):3789-97.
Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, Miller S, Hackman RC, Myerson D, Sedlak RH, Kim YJ, Fukuda T, Fredricks DN, Madtes DK, Jerome KR, Boeckh M. PMID: 25918347; PMCID: PMC4463739.
View in:
PubMed Mentions:
78 Fields:
Translation:
HumansAnimals
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No viral association found in a set of differentiated vulvar intraepithelial neoplasia cases by human papillomavirus and pan-viral microarray testing. PLoS One. 2015; 10(4):e0125292.
Saglam O, Samayoa E, Somasekar S, Naccache S, Iwasaki A, Chiu CY. PMID: 25894343; PMCID: PMC4404153.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Advances in testing technology to ensure transfusion safety – NAT and beyond. ISBT Science Series. 2015 Apr 1; 10(S1):55-64.
Stramer SS, Dodd DR, Chiu CC. .
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Publisher Site Mentions:
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A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study. Lancet Infect Dis. 2015 Jun; 15(6):671-82.
Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, Dominguez SR, Glaser C, Aldrovandi G, Chiu CY. PMID: 25837569; PMCID: PMC6027625.
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PubMed Mentions:
177 Fields:
Translation:
HumansCellsPHPublic Health
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Genome Sequence of Bivens Arm Virus, a Tibrovirus Belonging to the Species Tibrogargan virus (Mononegavirales: Rhabdoviridae). Genome Announc. 2015 Mar 19; 3(2).
Lauck M, Yú SQ, Caì Y, Hensley LE, Chiu CY, O'Connor DH, Kuhn JH. PMID: 25792044; PMCID: PMC4394750.
View in:
PubMed Mentions:
6
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An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res. 2015 Apr 20; 43(7):e46.
Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL. PMID: 25586223; PMCID: PMC4402509.
View in:
PubMed Mentions:
152 Fields:
Translation:
HumansCells
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Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clin Infect Dis. 2015 Mar 15; 60(6):919-23.
Naccache SN, Peggs KS, Mattes FM, Phadke R, Garson JA, Grant P, Samayoa E, Federman S, Miller S, Lunn MP, Gant V, Chiu CY. PMID: 25572898; PMCID: PMC4345816.
View in:
PubMed Mentions:
156 Fields:
Translation:
HumansCells
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DNA microarray for detection of gastrointestinal viruses. J Clin Microbiol. 2015 Jan; 53(1):136-45.
Martínez MA, Soto-Del Río Mde L, Gutiérrez RM, Chiu CY, Greninger AL, Contreras JF, López S, Arias CF, Isa P. PMID: 25355758; PMCID: PMC4290912.
View in:
PubMed Mentions:
17 Fields:
Translation:
HumansCells
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Actionable diagnosis of neuroleptospirosis by next-generation sequencing. N Engl J Med. 2014 Jun 19; 370(25):2408-17.
Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY. PMID: 24896819; PMCID: PMC4134948.
View in:
PubMed Mentions:
429 Fields:
Translation:
HumansCells
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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Res. 2014 Jul; 24(7):1180-92.
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J, Miller S, Chiu CY. PMID: 24899342; PMCID: PMC4079973.
View in:
PubMed Mentions:
231 Fields:
Translation:
Humans
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Next-Generation Sequencing for Pathogen Discovery in Meningoencephalitis (P2.306). Neurology. 2014 Apr 8; 82(10_supplement).
Wilson WM, Samayoa SE, Naccache NS, Somasekar SS, Yu YG, DeRisi DJ, Chiu CC. .
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Multiplexed immunoglobulin E sensitization in relation to exhaled nitric oxide in a population sample of children. Allergy. 2014 May; 69(5):678-82.
Yao TC, Tsai HJ, Tu YL, Chang SW, Hua MC, Liao SL, Tsai MH, Chiu CY, Lai SH, Yeh KW, Huang JL, PATCH study group. PMID: 24576320.
View in:
PubMed Mentions:
9 Fields:
Translation:
HumansAnimals
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Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis. Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11):E976.
Naccache SN, Hackett J, Delwart EL, Chiu CY. PMID: 24572576; PMCID: PMC3964066.
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PubMed Mentions:
22 Fields:
Translation:
Humans
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Chapter 2 Bas-Congo Virus A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever. Emerging Infectious Diseases. 2014 Jan 1; 13-24.
Grard GG, Fair FJ, Chiu CC, Leroy LE. .
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Publisher Site Mentions:
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The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J Virol. 2013 Nov; 87(22):11966-77.
Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J, Delwart EL, Chiu CY. PMID: 24027301; PMCID: PMC3807889.
View in:
PubMed Mentions:
133 Fields:
Translation:
HumansCells
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The microbiome and Clostridium difficile infection. . 2013 Aug 27; 46-59.
Chiu CC, Pillai PD. .
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Publisher Site Mentions:
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Rosavirus: the prototype of a proposed new genus of the Picornaviridae family. Virus Genes. 2013 Dec; 47(3):556-8.
Phan TG, Vo NP, Simmonds P, Samayoa E, Naccache S, Chiu CY, Delwart E. PMID: 23943414; PMCID: PMC4160104.
View in:
PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Experimental cross-species infection of common marmosets by titi monkey adenovirus. PLoS One. 2013; 8(7):e68558.
Yu G, Yagi S, Carrion R, Chen EC, Liu M, Brasky KM, Lanford RE, Kelly KR, Bales KL, Schnurr DP, Canfield DR, Patterson JL, Chiu CY. PMID: 23894316; PMCID: PMC3722195.
View in:
PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Characterization of the Bas-Congo virus glycoprotein and its function in pseudotyped viruses. J Virol. 2013 Sep; 87(17):9558-68.
Steffen I, Liss NM, Schneider BS, Fair JN, Chiu CY, Simmons G. PMID: 23785218; PMCID: PMC3754090.
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PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
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Viral pathogen discovery. Curr Opin Microbiol. 2013 Aug; 16(4):468-78.
Chiu CY. PMID: 23725672; PMCID: PMC5964995.
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The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick. PLoS One. 2013; 8(4):e62083.
Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, Pilgard MA, Johnson BJ, Chiu CY. PMID: 23637969; PMCID: PMC3639253.
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PubMed Mentions:
33 Fields:
Translation:
HumansAnimalsCells
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The hidden threat of unidentified agents of disease in human and veterinary biologicals. Biologicals. 2013 May; 41(3):129-30.
Chiu C. PMID: 23622811; PMCID: PMC7128734.
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PubMed Mentions:
1 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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A novel adenovirus species associated with an acute respiratory outbreak in a baboon colony and evidence of coincident human infection. mBio. 2013 Apr 16; 4(2):e00084.
Chiu CY, Yagi S, Lu X, Yu G, Chen EC, Liu M, Dick EJ, Carey KD, Erdman DD, Leland MM, Patterson JL. PMID: 23592261; PMCID: PMC3634605.
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PubMed Mentions:
31 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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A novel bocavirus in canine liver. Virol J. 2013 Feb 13; 10:54.
Li L, Pesavento PA, Leutenegger CM, Estrada M, Coffey LL, Naccache SN, Samayoa E, Chiu C, Qiu J, Wang C, Deng X, Delwart E. PMID: 23402347; PMCID: PMC3577433.
View in:
PubMed Mentions:
33 Fields:
Translation:
AnimalsCells
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Bas-Congo virus: another deadly virus? Future Microbiol. 2013 Feb; 8(2):139-41.
Chiu C, Fair J, Leroy EM. PMID: 23374120.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis. J Eukaryot Microbiol. 2013 Mar-Apr; 60(2):179-91.
Herman EK, Greninger AL, Visvesvara GS, Marciano-Cabral F, Dacks JB, Chiu CY. PMID: 23360210; PMCID: PMC3594069.
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PubMed Mentions:
20 Fields:
Translation:
Animals
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Discovery of a novel polyomavirus in acute diarrheal samples from children. PLoS One. 2012; 7(11):e49449.
Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. PMID: 23166671; PMCID: PMC3498111.
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PubMed Mentions:
58 Fields:
Translation:
HumansCells
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Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing. mBio. 2012 Oct 23; 3(5).
Shahinas D, Silverman M, Sittler T, Chiu C, Kim P, Allen-Vercoe E, Weese S, Wong A, Low DE, Pillai DR. PMID: 23093385; PMCID: PMC3482503.
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PubMed Mentions:
80 Fields:
Translation:
HumansCells
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A novel rhabdovirus associated with acute hemorrhagic fever in central Africa. PLoS Pathog. 2012 Sep; 8(9):e1002924.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 23028323; PMCID: PMC3460624.
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In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer. PLoS One. 2012; 7(9):e44954.
Lee D, Das Gupta J, Gaughan C, Steffen I, Tang N, Luk KC, Qiu X, Urisman A, Fischer N, Molinaro R, Broz M, Schochetman G, Klein EA, Ganem D, Derisi JL, Simmons G, Hackett J, Silverman RH, Chiu CY. PMID: 23028701; PMCID: PMC3445615.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCells
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Cross-species transmission of a novel adenovirus associated with a fulminant pneumonia outbreak in a new world monkey colony. PLoS Pathog. 2011 Jul; 7(7):e1002155.
Chen EC, Yagi S, Kelly KR, Mendoza SP, Tarara RP, Canfield DR, Maninger N, Rosenthal A, Spinner A, Bales KL, Schnurr DP, Lerche NW, Chiu CY. PMID: 21779173; PMCID: PMC3136464.
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PubMed Mentions:
83 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J Vis Exp. 2011 Apr 27; (50).
Chen EC, Miller SA, DeRisi JL, Chiu CY. PMID: 21559002; PMCID: PMC3169278.
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PubMed Mentions:
36 Fields:
Translation:
HumansCells
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Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. Am J Respir Crit Care Med. 2011 Jun 15; 183(12):1698-702.
Wootton SC, Kim DS, Kondoh Y, Chen E, Lee JS, Song JW, Huh JW, Taniguchi H, Chiu C, Boushey H, Lancaster LH, Wolters PJ, DeRisi J, Ganem D, Collard HR. PMID: 21471095; PMCID: PMC3136996.
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PubMed Mentions:
120 Fields:
Translation:
HumansCells
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View in:
PubMed Mentions:
6 Fields:
Translation:
HumansCellsPHPublic Health
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A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America. PLoS One. 2010 Oct 18; 5(10):e13381.
Greninger AL, Chen EC, Sittler T, Scheinerman A, Roubinian N, Yu G, Kim E, Pillai DR, Guyard C, Mazzulli T, Isa P, Arias CF, Hackett J, Schochetman G, Miller S, Tang P, Chiu CY. PMID: 20976137; PMCID: PMC2956640.
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PubMed Mentions:
98 Fields:
Translation:
HumansCells
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Identification of two novel missense mutations in the KAL1 gene in Han Chinese subjects with Kallmann Syndrome. J Endocrinol Invest. 2011 Jan; 34(1):53-9.
Jap TS, Chiu CY, Lirng JF, Won GS. PMID: 20530987.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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The effect of temperament and neuropsychological functioning on behavior problems in children with new-onset seizures. Epilepsy Behav. 2010 Apr; 17(4):467-73.
Baum KT, Byars AW, deGrauw TJ, Dunn DW, Bates JE, Howe SR, Chiu CY, Austin JK. PMID: 20171932; PMCID: PMC2860064.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease. J Virol. 2010 May; 84(9):4407-14.
Chiu CY, Greninger AL, Chen EC, Haggerty TD, Parsonnet J, Delwart E, Derisi JL, Ganem D. PMID: 20164225; PMCID: PMC2863762.
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PubMed Mentions:
29 Fields:
Translation:
HumansAnimalsCells
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Metagenomics for the discovery of novel human viruses. Future Microbiol. 2010 Feb; 5(2):177-89.
Tang P, Chiu C. PMID: 20143943.
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PubMed Mentions:
66 Fields:
Translation:
HumansCells
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Thoracic CT findings of novel influenza A (H1N1) infection in immunocompromised patients. Emerg Radiol. 2010 Jul; 17(4):299-307.
Elicker BM, Schwartz BS, Liu C, Chen EC, Miller SA, Chiu CY, Webb WR. PMID: 20111882; PMCID: PMC2880241.
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PubMed Mentions:
18 Fields:
Translation:
HumansCells
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Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environ Microbiol. 2010 Feb; 12(2):455-66.
Shade A, Chiu CY, McMahon KD. PMID: 19878266.
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PubMed Mentions:
20 Fields:
Translation:
CellsPHPublic Health
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Bacteriologic features of surgical site infections following breast surgery. Am J Surg. 2009 Oct; 198(4):529-31.
Mukhtar RA, Throckmorton AD, Alvarado MD, Ewing CA, Esserman LJ, Chiu C, Hwang ES. PMID: 19800462.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virol J. 2009 Jun 18; 6:82.
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. PMID: 19538752; PMCID: PMC2709156.
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PubMed Mentions:
82 Fields:
Translation:
HumansCells
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The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PLoS One. 2008; 3(10):e3495.
Sorber K, Chiu C, Webster D, Dimon M, Ruby JG, Hekele A, DeRisi JL. PMID: 18941527; PMCID: PMC2566813.
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PubMed Mentions:
19 Fields:
Translation:
HumansAnimals
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Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proc Natl Acad Sci U S A. 2008 Sep 16; 105(37):14124-9.
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. PMID: 18768820; PMCID: PMC2528868.
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PubMed Mentions:
89 Fields:
Translation:
HumansCells
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Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virol J. 2008 Jul 31; 5:88.
Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, DeRisi JL. PMID: 18671869; PMCID: PMC2546392.
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PubMed Mentions:
109 Fields:
Translation:
AnimalsCells
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Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. J Pediatr. 2008 Jul; 153(1):76-83.
Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. PMID: 18571541; PMCID: PMC3174048.
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PubMed Mentions:
30 Fields:
Translation:
Humans
-
Streptococcus suis meningitis, United States. Emerg Infect Dis. 2008 Jan; 14(1):183-5.
Lee GT, Chiu CY, Haller BL, Denn PM, Hall CS, Gerberding JL. PMID: 18258107; PMCID: PMC2600143.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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Availability and immobilization of 137Cs in subtropical high mountain forest and grassland soils. J Environ Radioact. 2008 Jun; 99(6):882-9.
Chiu CY, Wang CJ, Huang CC. PMID: 18164109.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsPHPublic Health
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Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. J Clin Microbiol. 2007 Jul; 45(7):2340-3.
Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. PMID: 17494722; PMCID: PMC1933008.
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PubMed Mentions:
38 Fields:
Translation:
HumansCells
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Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clin Infect Dis. 2006 Oct 15; 43(8):e71-6.
Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. PMID: 16983602; PMCID: PMC7108001.
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PubMed Mentions:
46 Fields:
Translation:
HumansCells
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E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biol. 2005; 6(9):R78.
Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. PMID: 16168085; PMCID: PMC1242213.
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PubMed Mentions:
45 Fields:
Translation:
HumansCells
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Morbidity and mortality of short-bowel syndrome in infants with abdominal wall defects. Am Surg. 2002 Jan; 68(1):75-9.
Thakur A, Chiu C, Quiros-Tejeira RE, Reyen L, Ament M, Atkinson JB, Fonkalsrud EW. PMID: 12467323.
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PubMed Mentions:
5 Fields:
Translation:
Humans
-
Prospective, randomized, placebo-controlled evaluation of the safety and immunogenicity of three lots of intranasal trivalent influenza vaccine among young children. Pediatr Infect Dis J. 2001 Aug; 20(8):740-6.
Zangwill KM, Droge J, Mendelman P, Marcy SM, Partridge S, Chiu CY, Jing J, Chang SJ, Cho I, Ward JI. PMID: 11734734.
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Structural analysis of a fiber-pseudotyped adenovirus with ocular tropism suggests differential modes of cell receptor interactions. J Virol. 2001 Jun; 75(11):5375-80.
Chiu CY, Wu E, Brown SL, Von Seggern DJ, Nemerow GR, Stewart PL. PMID: 11333920; PMCID: PMC114944.
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PubMed Mentions:
23 Fields:
Translation:
Cells
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Uterine artery embolisation for treatment of fibroids: experience in Chinese women. Singapore Med J. 2001 Apr; 42(4):148-54.
Chiu CY, Wong WK, Mak HL, Chan CS, Kwok CH, Chan CH, Chan MK. PMID: 11465313.
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PubMed Mentions: Fields:
Translation:
Humans
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Cryo-Em Imaging of a Pseudotyped Adenovhtus with Ocular Cell Tropism. Microscopy and Microanalysis. 2000 Aug 1; 6(S2):286-287.
Stewart SP, Chiu CC, Von Seggern VD, Nemerow NG. .
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Publisher Site Mentions:
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Digitally collected cryo-electron micrographs for single particle reconstruction. Microsc Res Tech. 2000 May 01; 49(3):224-32.
Stewart PL, Cary RB, Peterson SR, Chiu CY. PMID: 10816264.
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PubMed Mentions:
10 Fields:
Translation:
Cells
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Review: resolution issues in single-particle reconstruction. J Struct Biol. 1999 Dec 01; 128(1):58-64.
Stewart PL, Chiu CY, Haley DA, Kong LB, Schlessman JL. PMID: 10600559.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Structure of adenovirus complexed with its internalization receptor, alphavbeta5 integrin. J Virol. 1999 Aug; 73(8):6759-68.
Chiu CY, Mathias P, Nemerow GR, Stewart PL. PMID: 10400774; PMCID: PMC112761.
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PubMed Mentions:
63 Fields:
Translation:
HumansCells
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A helper-independent adenovirus vector with E1, E3, and fiber deleted: structure and infectivity of fiberless particles. J Virol. 1999 Feb; 73(2):1601-8.
Von Seggern DJ, Chiu CY, Fleck SK, Stewart PL, Nemerow GR. PMID: 9882366; PMCID: PMC103985.
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PubMed Mentions:
37 Fields:
Translation:
HumansCells
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Cryo-EM imaging of the catalytic subunit of the DNA-dependent protein kinase. J Mol Biol. 1998 Dec 11; 284(4):1075-81.
Chiu CY, Cary RB, Chen DJ, Peterson SR, Stewart PL. PMID: 9837727.
View in:
PubMed Mentions:
21 Fields:
Translation:
HumansCells
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Modification of a receptor-binding surface of epidermal growth factor (EGF): analogs with enhanced receptor affinity at low pH or at neutrality. Protein Eng. 1998 Jun; 11(6):473-80.
Mullenbach GT, Chiu CY, Gyenes A, Blaney J, Rosenberg S, Marlowe CK, Brown S, Stratton-Thomas J, Montelione GT, George-Nascimento C, Stauber G. PMID: 9725626.
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PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Cryo-EM visualization of an exposed RGD epitope on adenovirus that escapes antibody neutralization. EMBO J. 1997 Mar 17; 16(6):1189-98.
Stewart PL, Chiu CY, Huang S, Muir T, Zhao Y, Chait B, Mathias P, Nemerow GR. PMID: 9135136; PMCID: PMC1169718.
View in:
PubMed Mentions:
59 Fields:
Translation:
HumansAnimalsCells
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Oligonucleotide N3'-->P5' phosphoramidates as antisense agents. Nucleic Acids Res. 1996 Apr 15; 24(8):1508-14.
Gryaznov S, Skorski T, Cucco C, Nieborowska-Skorska M, Chiu CY, Lloyd D, Chen JK, Koziolkiewicz M, Calabretta B. PMID: 8628685; PMCID: PMC145826.
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PubMed Mentions:
23 Fields:
Translation:
HumansAnimalsCells
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Enhanced antibody responses in infants given different sequences of heterogeneous Haemophilus influenzae type b conjugate vaccines. J Pediatr. 1995 Feb; 126(2):206-11.
Greenberg DP, Lieberman JM, Marcy SM, Wong VK, Partridge S, Chang SJ, Chiu CY, Ward JI. PMID: 7844666.
View in:
PubMed Mentions:
5 Fields:
Translation:
HumansCellsCTClinical Trials
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Immunogenicity of Haemophilus influenzae type b tetanus toxoid conjugate vaccine in young infants. The Kaiser-UCLA Vaccine Study Group. J Infect Dis. 1994 Jul; 170(1):76-81.
Greenberg DP, Vadheim CM, Partridge S, Chang SJ, Chiu CY, Ward JI. PMID: 8014524.
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PubMed Mentions:
14 Fields:
Translation:
HumansCellsCTClinical Trials
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Comparison of naturally acquired and vaccine-induced antibodies to Haemophilus influenzae type b capsular polysaccharide. Infect Immun. 1993 Dec; 61(12):5345-50.
Jelonek MT, Chang SJ, Chiu CY, Park MK, Nahm MH, Ward JI. PMID: 8225608; PMCID: PMC281321.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Effects of age, breast feeding, and household structure on Haemophilus influenzae type b disease risk and antibody acquisition in Alaskan Eskimos. Am J Epidemiol. 1991 Nov 15; 134(10):1212-21.
Petersen GM, Silimperi DR, Chiu CY, Ward JI. PMID: 1746530.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Haemophilus influenzae type b anticapsular antibody responses to PRP-pertussis and PRP-D vaccines in Alaska native infants. J Infect Dis. 1988 Oct; 158(4):719-23.
Ward JI, Brenneman G, Lepow M, Lum M, Burkhart K, Chiu CY. PMID: 3262694.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Developmental and metabolic regulation of the Drosophila melanogaster 3-hydroxy-3-methylglutaryl coenzyme A reductase. Mol Cell Biol. 1988 Jul; 8(7):2713-21.
Gertler FB, Chiu CY, Richter-Mann L, Chin DJ. PMID: 3136321; PMCID: PMC363483.
View in:
PubMed Mentions:
17 Fields:
Translation:
AnimalsCells