(Q30585582)

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20 March 2020

title

Multiple interactions of the intrinsically disordered region between the helicase and nuclease domains of the archaeal Hef protein (English)

1 reference

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20 March 2020

4

1 reference

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20 March 2020

author name string

Sonoko Ishino

1

1 reference

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20 March 2020

Takeshi Yamagami

2

1 reference

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20 March 2020

Makoto Kitamura

3

1 reference

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20 March 2020

Tetsuya Mori

5

1 reference

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20 March 2020

Shyogo Sugiyama

6

1 reference

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20 March 2020

Toshio Ando

7

1 reference

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20 March 2020

Natsuko Goda

8

1 reference

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20 March 2020

Takeshi Tenno

9

1 reference

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20 March 2020

Hidekazu Hiroaki

10

1 reference

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20 March 2020

Yoshizumi Ishino

11

1 reference

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20 March 2020

language of work or name

English

0 references

publication date

19 June 2014

1 reference

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Journal of Biological Chemistry

20 March 2020

published in

1 reference

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20 March 2020

volume

289

1 reference

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20 March 2020

issue

31

1 reference

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20 March 2020

page(s)

21627-21639

1 reference

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An extended network of genomic maintenance in the archaeon Pyrococcus abyssi highlights unexpected associations between eucaryotic homologs

20 March 2020

cites work

1 reference

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Intracellular dynamics of archaeal FANCM homologue Hef in response to halted DNA replication

20 June 2018

1 reference

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Phosphorylation-coupled intramolecular dynamics of unstructured regions in chromatin remodeler FACT.

20 June 2018

1 reference

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RecJ-like protein from Pyrococcus furiosus has 3'-5' exonuclease activity on RNA: implications for proofreading of 3'-mismatched RNA primers in DNA replication.

20 June 2018

1 reference

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Readers of PCNA modifications

20 June 2018

1 reference

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Fanconi anaemia and the repair of Watson and Crick DNA crosslinks

20 June 2018

1 reference

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Intrinsically disordered proteins: a 10-year recap

20 June 2018

1 reference

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Regulation of DNA cross-link repair by the Fanconi anemia/BRCA pathway

20 June 2018

1 reference

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The structure of the FANCM–MHF complex reveals physical features for functional assembly

20 June 2018

1 reference

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Intrinsically disordered proteins: from sequence and conformational properties toward drug discovery

20 June 2018

1 reference

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Replication fork dynamics and the DNA damage response.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Mechanisms of replication fork protection: a safeguard for genome stability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Orchestrating the nucleases involved in DNA interstrand cross-link (ICL) repair.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Understanding the molecular basis of common fragile sites instability: role of the proteins involved in the recovery of stalled replication forks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Rescue of replication failure by Fanconi anaemia proteins

20 June 2018

1 reference

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The Fanconi anaemia pathway orchestrates incisions at sites of crosslinked DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

DNA interstrand crosslink repair and cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Intrinsically disordered proteins: regulation and disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

A novel DNA nuclease is stimulated by association with the GINS complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

MHF1-MHF2, a histone-fold-containing protein complex, participates in the Fanconi anemia pathway via FANCM

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

FANCM connects the genome instability disorders Bloom's Syndrome and Fanconi Anemia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Physical and functional interactions between uracil-DNA glycosylase and proliferating cell nuclear antigen from the euryarchaeon Pyrococcus furiosus.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

DNA polymerases BI and D from the hyperthermophilic archaeon Pyrococcus furiosus both bind to proliferating cell nuclear antigen with their C-terminal PIP-box motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Structure-specific DNA nucleases: structural basis for 3D-scissors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

The vertebrate Hef ortholog is a component of the Fanconi anemia tumor-suppressor pathway.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

A human ortholog of archaeal DNA repair protein Hef is defective in Fanconi anemia complementation group M

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

PROTEIN FAMILIES AND THEIR EVOLUTION—A STRUCTURAL PERSPECTIVE

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Supra-domains: evolutionary units larger than single protein domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

A high-speed atomic force microscope for studying biological macromolecules.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Intrinsically disordered protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

The puzzle of PCNA's many partners

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Interaction of an apolipoprotein (apoLP-alanine) with phosphatidylcholine.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Calculation of protein extinction coefficients from amino acid sequence data

20 June 2018

1 reference

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Relationship between electrostatics and redox function in human thioredoxin: characterization of pH titration shifts using two-dimensional homo- and heteronuclear NMR.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4118122

Cooperation of the N-terminal Helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.554998

Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.554998

Crystal structure and functional implications of Pyrococcus furiosus hef helicase domain involved in branched DNA processing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.554998

Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.554998

Identification of a novel binding motif in Pyrococcus furiosus DNA ligase for the functional interaction with proliferating cell nuclear antigen

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947516

12 December 2020

The archaeal Xpf/Mus81/FANCM homolog Hef and the Holliday junction resolvase Hjc define alternative pathways that are essential for cell viability in Haloferax volcanii

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947516

12 December 2020

Novel endonuclease in Archaea cleaving DNA with various branched structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947516

12 December 2020

An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947516

12 December 2020

Identifiers

DOI

10.1074/JBC.M114.554998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947516%20AND%20SRC:MED&resulttype=core&format=json

release_zpgqvncfezbl3dogbwlw6mqu3e

20 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zpgqvncfezbl3dogbwlw6mqu3e

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947516%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

24947516

1 reference