(Q24810241)

3 July 2017

title

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes (English)

1 reference

3 July 2017

Jochen Brumm

4

0 references

Wyeth Wasserman

object named as

Wyeth W Wasserman

7

0 references

author name string

Shannan J Ho Sui

1

1 reference

3 July 2017

James R Mortimer

2

1 reference

3 July 2017

David J Arenillas

3

1 reference

3 July 2017

Christopher J Walsh

5

1 reference

3 July 2017

Brian P Kennedy

6

1 reference

3 July 2017

language of work or name

English

0 references

publication date

2 June 2005

1 reference

3 July 2017

published in

Nucleic Acids Research

1 reference

3 July 2017

volume

33

1 reference

3 July 2017

issue

10

1 reference

3 July 2017

page(s)

3154-3164

1 reference

Identification of conserved regulatory elements by comparative genome analysis

3 July 2017

cites work

1 reference

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Detection of functional DNA motifs via statistical over-representation

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Transcription repression in oncogenic transformation: common targets of epigenetic repression in cells transformed by Fos, Ras or Dnmt1.

28 September 2017

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CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting

28 September 2017

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Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells

28 September 2017

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An approach to identify over-represented cis-elements in related sequences

28 September 2017

1 reference

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Toucan: deciphering the cis-regulatory logic of coregulated genes.

28 September 2017

1 reference

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28 September 2017

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Designed transcription factors as tools for therapeutics and functional genomics

28 September 2017

1 reference

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TFBS: Computational framework for transcription factor binding site analysis

28 September 2017

1 reference

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

28 September 2017

1 reference

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IFN-stimulated gene 15 is synergistically activated through interactions between the myelocyte/lymphocyte-specific transcription factors, PU.1, IFN regulatory factor-8/IFN consensus sequence binding protein, and IFN regulatory factor-4: characteriza

28 September 2017

1 reference

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rVista for comparative sequence-based discovery of functional transcription factor binding sites

28 September 2017

1 reference

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Characterization of the c-MYC-regulated transcriptome by SAGE: identification and analysis of c-MYC target genes

28 September 2017

1 reference

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28 September 2017

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A predictive model for regulatory sequences directing liver-specific transcription.

28 September 2017

1 reference

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PU.1 and multiple IFN regulatory factor proteins synergize to mediate transcriptional activation of the human IL-1 beta gene

28 September 2017

1 reference

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Diverse agents act at multiple levels to inhibit the Rel/NF-kappaB signal transduction pathway

28 September 2017

1 reference

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Quantifying DNA-protein interactions by double-stranded DNA arrays.

28 September 2017

1 reference

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Sp1 activation of a TATA-less promoter requires a species-specific interaction involving transcription factor IID.

28 September 2017

1 reference

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Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

A sensitive method for the determination of protein-DNA binding specificities

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

Transcriptional activation by the human c-Myc oncoprotein in yeast requires interaction with Max.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

Identification of regulatory regions which confer muscle-specific gene expression.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

NF-kappa B as a frequent target for immunosuppressive and anti-inflammatory molecules.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

Searching for regulatory elements in human noncoding sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

In silico identification of metazoan transcriptional regulatory regions

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

Human-mouse genome comparisons to locate regulatory sites

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1142402

Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15933209

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mouse brain organization revealed through direct genome-scale TF expression analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15933209

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI624

1 reference

OpenCitations bibliographic resource ID

3 July 2017

181064

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

181064

1 reference