{
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "<div class='alert alert-warning'>\n\n# JupyterLite warning\n\nRunning the scikit-learn examples in JupyterLite is experimental and you may encounter some unexpected behavior.\n\nThe main difference is that imports will take a lot longer than usual, for example the first `import sklearn` can take roughly 10-20s.\n\nIf you notice problems, feel free to open an [issue](https://github.com/scikit-learn/scikit-learn/issues/new/choose) about it.\n</div>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": null,
      "metadata": {
        "collapsed": false
      },
      "outputs": [],
      "source": [
        "# JupyterLite-specific code\nimport matplotlib\nimport pandas"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "\n# Normal, Ledoit-Wolf and OAS Linear Discriminant Analysis for classification\n\nThis example illustrates how the Ledoit-Wolf and Oracle Shrinkage\nApproximating (OAS) estimators of covariance can improve classification.\n"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": null,
      "metadata": {
        "collapsed": false
      },
      "outputs": [],
      "source": [
        "import matplotlib.pyplot as plt\nimport numpy as np\n\nfrom sklearn.covariance import OAS\nfrom sklearn.datasets import make_blobs\nfrom sklearn.discriminant_analysis import LinearDiscriminantAnalysis\n\nn_train = 20  # samples for training\nn_test = 200  # samples for testing\nn_averages = 50  # how often to repeat classification\nn_features_max = 75  # maximum number of features\nstep = 4  # step size for the calculation\n\n\ndef generate_data(n_samples, n_features):\n    \"\"\"Generate random blob-ish data with noisy features.\n\n    This returns an array of input data with shape `(n_samples, n_features)`\n    and an array of `n_samples` target labels.\n\n    Only one feature contains discriminative information, the other features\n    contain only noise.\n    \"\"\"\n    X, y = make_blobs(n_samples=n_samples, n_features=1, centers=[[-2], [2]])\n\n    # add non-discriminative features\n    if n_features > 1:\n        X = np.hstack([X, np.random.randn(n_samples, n_features - 1)])\n    return X, y\n\n\nacc_clf1, acc_clf2, acc_clf3 = [], [], []\nn_features_range = range(1, n_features_max + 1, step)\nfor n_features in n_features_range:\n    score_clf1, score_clf2, score_clf3 = 0, 0, 0\n    for _ in range(n_averages):\n        X, y = generate_data(n_train, n_features)\n\n        clf1 = LinearDiscriminantAnalysis(solver=\"lsqr\", shrinkage=None).fit(X, y)\n        clf2 = LinearDiscriminantAnalysis(solver=\"lsqr\", shrinkage=\"auto\").fit(X, y)\n        oa = OAS(store_precision=False, assume_centered=False)\n        clf3 = LinearDiscriminantAnalysis(solver=\"lsqr\", covariance_estimator=oa).fit(\n            X, y\n        )\n\n        X, y = generate_data(n_test, n_features)\n        score_clf1 += clf1.score(X, y)\n        score_clf2 += clf2.score(X, y)\n        score_clf3 += clf3.score(X, y)\n\n    acc_clf1.append(score_clf1 / n_averages)\n    acc_clf2.append(score_clf2 / n_averages)\n    acc_clf3.append(score_clf3 / n_averages)\n\nfeatures_samples_ratio = np.array(n_features_range) / n_train\n\nplt.plot(\n    features_samples_ratio,\n    acc_clf1,\n    linewidth=2,\n    label=\"LDA\",\n    color=\"gold\",\n    linestyle=\"solid\",\n)\nplt.plot(\n    features_samples_ratio,\n    acc_clf2,\n    linewidth=2,\n    label=\"LDA with Ledoit Wolf\",\n    color=\"navy\",\n    linestyle=\"dashed\",\n)\nplt.plot(\n    features_samples_ratio,\n    acc_clf3,\n    linewidth=2,\n    label=\"LDA with OAS\",\n    color=\"red\",\n    linestyle=\"dotted\",\n)\n\nplt.xlabel(\"n_features / n_samples\")\nplt.ylabel(\"Classification accuracy\")\n\nplt.legend(loc=\"lower left\")\nplt.ylim((0.65, 1.0))\nplt.suptitle(\n    \"LDA (Linear Discriminant Analysis) vs. \"\n    + \"\\n\"\n    + \"LDA with Ledoit Wolf vs. \"\n    + \"\\n\"\n    + \"LDA with OAS (1 discriminative feature)\"\n)\nplt.show()"
      ]
    }
  ],
  "metadata": {
    "kernelspec": {
      "display_name": "Python 3",
      "language": "python",
      "name": "python3"
    },
    "language_info": {
      "codemirror_mode": {
        "name": "ipython",
        "version": 3
      },
      "file_extension": ".py",
      "mimetype": "text/x-python",
      "name": "python",
      "nbconvert_exporter": "python",
      "pygments_lexer": "ipython3",
      "version": "3.9.18"
    }
  },
  "nbformat": 4,
  "nbformat_minor": 0
}