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EnhancementError ReportingIncorrect or improved errors from pandasIncorrect or improved errors from pandasStringsString extension data type and string dataString extension data type and string data
Description
The following fails with an AssertionError
on pandas 1.0.0rc0:
pd.Series(["a", "b"], dtype=pd.StringDtype)
I wrote this by mistake — this works:
pd.Series(["a", "b"], dtype=pd.StringDtype())
When running the former, I get a traceback with an AssertionError:
Traceback (most recent call last):
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/construction.py", line 534, in _try_cast
if is_integer_dtype(dtype):
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/dtypes/common.py", line 827, in is_integer_dtype
return _is_dtype_type(arr_or_dtype, classes_and_not_datetimelike(np.integer))
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/dtypes/common.py", line 1732, in _is_dtype_type
return condition(np.dtype(arr_or_dtype).type)
TypeError: data type not understood
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "mwe18.py", line 2, in <module>
pd.Series(["a", "b"], dtype=pd.StringDtype)
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/series.py", line 304, in __init__
data = sanitize_array(data, index, dtype, copy, raise_cast_failure=True)
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/construction.py", line 438, in sanitize_array
subarr = _try_cast(data, dtype, copy, raise_cast_failure)
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/construction.py", line 562, in _try_cast
subarr = array_type(arr, dtype=dtype, copy=copy)
File "/media/nas/x21324/miniconda3/envs/py37e/lib/python3.7/site-packages/pandas/core/arrays/string_.py", line 180, in _from_sequence
assert dtype == "string"
AssertionError
Coming from numpy, I find it unconventional that the type ending in dtype
is not itself a valid dtype, but rather a constructor for such a dtype. Therefore, I would consider that a friendlier error message could be in order (or maybe it should even work).
I'm running pandas 1.0.0rc0 on Python 3.7.6.
The full environment:
# packages in environment at /media/nas/x21324/miniconda3/envs/py37e:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 0_gnu conda-forge
affine 2.3.0 py_0 conda-forge
aggdraw 1.3.11 py37hc56bac0_0 conda-forge
alabaster 0.7.12 py_0 conda-forge
appdirs 1.4.3 pypi_0 pypi
arrow-cpp 0.15.1 py37had5782a_4 conda-forge
asciitree 0.3.3 py_2 conda-forge
attrs 19.3.0 py_0 conda-forge
awscli 1.17.8 py37_0 conda-forge
babel 2.8.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
beautifulsoup4 4.8.2 py37_0 conda-forge
behave 1.2.6 py37_1000 conda-forge
bitstring 3.1.6 pypi_0 pypi
bleach 3.1.0 py_0 conda-forge
blosc 1.17.0 he1b5a44_1 conda-forge
bokeh 1.4.0 py37_0 conda-forge
boost-cpp 1.70.0 h8e57a91_2 conda-forge
boto3 1.11.8 py_0 conda-forge
botocore 1.14.8 py_0 conda-forge
brotli 1.0.7 he1b5a44_1000 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
c-ares 1.15.0 h516909a_1001 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cairo 1.16.0 hfb77d84_1002 conda-forge
cartopy 0.17.0 py37hc5b2455_1008 conda-forge
certifi 2019.11.28 py37_0 conda-forge
cffi 1.13.2 py37h8022711_0 conda-forge
cfgrib 0.9.7.3 py_0 conda-forge
cfitsio 3.470 hb60a0a2_2 conda-forge
cftime 1.0.4.2 py37hc1659b7_0 conda-forge
chardet 3.0.4 py37_1003 conda-forge
click 7.0 py_0 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 1.2.2 py_1 conda-forge
codecov 2.0.15 py_1 conda-forge
colorama 0.4.1 py_0 conda-forge
colorcet 2.0.1 py_0 conda-forge
configobj 5.0.6 py_0 conda-forge
coverage 5.0.3 py37h516909a_0 conda-forge
coveralls 1.10.0 py_0 conda-forge
cryptography 2.8 py37h72c5cf5_1 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
cycler 0.10.0 py_2 conda-forge
cython 0.29.14 py37he1b5a44_0 conda-forge
cytoolz 0.10.1 py37h516909a_0 conda-forge
dask 2.9.2 py_0 conda-forge
dask-core 2.9.2 py_0 conda-forge
datashader 0.8.0 py_0 conda-forge
datashape 0.5.4 py_1 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
distributed 2.9.3 py_0 conda-forge
docopt 0.6.2 py_1 conda-forge
docutils 0.15.2 py37_0 conda-forge
double-conversion 3.1.5 he1b5a44_2 conda-forge
eccodes 2.14.1 hc4140ea_3 conda-forge
entrypoints 0.3 py37_1000 conda-forge
expat 2.2.5 he1b5a44_1004 conda-forge
fasteners 0.14.1 py_3 conda-forge
fcitools 0.1.0.post0.dev5+ga19d0d1 pypi_0 pypi
fiona 1.8.13 py37h900e953_0 conda-forge
flake8 3.7.9 py37_0 conda-forge
fogpy 1.2.0+dev21.g2b0d49d.get.validation.output.for.fog.mask pypi_0 pypi
fogtools 0.0.post0.dev13+g735723f.dirty dev_0
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
freetype-py 2.1.0.post1 py_0 conda-forge
freexl 1.0.5 h14c3975_1002 conda-forge
fsspec 0.6.2 py_0 conda-forge
g2clib 1.6.0 hf3f1b0b_9 conda-forge
gdal 3.0.2 py37hbb6b9fb_3 conda-forge
geopandas 0.6.2 py_0 conda-forge
geos 3.7.2 he1b5a44_2 conda-forge
geotiff 1.5.1 hbd99317_7 conda-forge
geoviews 1.6.5 py_0 conda-forge
geoviews-core 1.6.5 py_0 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
gflags 2.2.2 he1b5a44_1002 conda-forge
giflib 5.1.7 h516909a_1 conda-forge
glib 2.58.3 py37h6f030ca_1002 conda-forge
glog 0.4.0 he1b5a44_1 conda-forge
goesr 0.5.2 pypi_0 pypi
grpc-cpp 1.25.0 h5321d42_1 conda-forge
gst-plugins-base 1.14.5 h0935bb2_0 conda-forge
gstreamer 1.14.5 h36ae1b5_0 conda-forge
h5netcdf 0.7.4 py_0 conda-forge
h5py 2.10.0 nompi_py37h513d04c_101 conda-forge
hdf4 4.2.13 hf30be14_1003 conda-forge
hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge
hdfeos2 2.20 h64bfcee_1000 conda-forge
hdfeos5 5.1.16 h8b6279f_5 conda-forge
heapdict 1.0.1 py_0 conda-forge
holoviews 1.12.7 py_0 conda-forge
icu 64.2 he1b5a44_1 conda-forge
idna 2.8 py37_1000 conda-forge
imageio 2.6.1 py37_0 conda-forge
imagesize 1.2.0 py_0 conda-forge
importlib_metadata 1.4.0 py37_0 conda-forge
ipdb 0.12.3 py_0 conda-forge
ipykernel 5.1.3 py37h5ca1d4c_0 conda-forge
ipython 7.11.1 py37h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.5.1 py_0 conda-forge
jasper 1.900.1 h07fcdf6_1006 conda-forge
jedi 0.15.2 py37_0 conda-forge
jinja2 2.10.3 py_0 conda-forge
jmespath 0.9.4 py_0 conda-forge
jpeg 9c h14c3975_1001 conda-forge
json-c 0.13.1 h14c3975_1001 conda-forge
jsonschema 3.2.0 py37_0 conda-forge
jupyter 1.0.0 py_2 conda-forge
jupyter_client 5.3.4 py37_1 conda-forge
jupyter_console 6.0.0 py_0 conda-forge
jupyter_core 4.6.1 py37_0 conda-forge
kealib 1.4.10 h58c409b_1005 conda-forge
kiwisolver 1.1.0 py37hc9558a2_0 conda-forge
krb5 1.16.4 h2fd8d38_0 conda-forge
ld_impl_linux-64 2.33.1 h53a641e_7 conda-forge
libaec 1.0.4 hf484d3e_0 conda-forge
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libclang 9.0.1 default_hde54327_0 conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libdap4 3.20.4 hd3bb157_0 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libevent 2.1.10 h72c5cf5_0 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
libgdal 3.0.2 h5534617_3 conda-forge
libgfortran-ng 7.3.0 hdf63c60_4 conda-forge
libgomp 9.2.0 h24d8f2e_2 conda-forge
libiconv 1.15 h516909a_1005 conda-forge
libkml 1.3.0 h4fcabce_1010 conda-forge
liblapack 3.8.0 14_openblas conda-forge
libllvm8 8.0.1 hc9558a2_0 conda-forge
libllvm9 9.0.1 hc9558a2_0 conda-forge
libnetcdf 4.7.1 nompi_h94020b1_102 conda-forge
libopenblas 0.3.7 h5ec1e0e_6 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libpq 11.5 hd9ab2ff_2 conda-forge
libprotobuf 3.10.1 h8b12597_0 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libspatialindex 1.9.3 he1b5a44_1 conda-forge
libspatialite 4.3.0a h4f6d029_1032 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
libtiff 0.4.2 pypi_0 pypi
libuuid 2.32.1 h14c3975_1000 conda-forge
libwebp 1.0.2 hf4e8a37_4 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxkbcommon 0.9.1 hebb1f50_0 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
libxslt 1.1.33 h31b3aaa_0 conda-forge
line_profiler 3.0.2 py37hc9558a2_0 conda-forge
llvmlite 0.31.0 py37h8b12597_0 conda-forge
locket 0.2.0 py_2 conda-forge
lxml 4.4.2 py37h7ec2d77_0 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
lzo 2.10 h14c3975_1000 conda-forge
markupsafe 1.1.1 py37h516909a_0 conda-forge
matplotlib 3.1.2 py37_1 conda-forge
matplotlib-base 3.1.2 py37h250f245_1 conda-forge
mccabe 0.6.1 py_1 conda-forge
mechanicalsoup 0.12.0 py_0 conda-forge
mistune 0.8.4 py37h516909a_1000 conda-forge
mock 3.0.5 py37_0 conda-forge
monotonic 1.5 py_0 conda-forge
more-itertools 8.1.0 py_0 conda-forge
msgpack-python 0.6.2 py37hc9558a2_0 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
munch 2.5.0 py_0 conda-forge
nbconvert 5.6.1 py37_0 conda-forge
nbformat 5.0.4 py_0 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
netcdf4 1.5.3 nompi_py37hfee4bf2_101 conda-forge
networkx 2.4 py_0 conda-forge
notebook 6.0.3 py37_0 conda-forge
nspr 4.24 he1b5a44_0 conda-forge
nss 3.47 he751ad9_0 conda-forge
numba 0.47.0 py37hb3f55d8_0 conda-forge
numcodecs 0.6.4 py37he1b5a44_0 conda-forge
numexpr 2.7.1 py37hb3f55d8_0 conda-forge
numpy 1.17.5 py37h95a1406_0 conda-forge
olefile 0.46 py_0 conda-forge
opencv-python 4.1.0.25 pypi_0 pypi
openjpeg 2.3.1 h981e76c_3 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
owslib 0.19.0 py_2 conda-forge
packaging 20.0 py_0 conda-forge
pandas 1.0.0rc0 pypi_0 pypi
pandoc 2.9.1.1 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
param 1.9.2 py_0 conda-forge
parquet-cpp 1.5.1 2 conda-forge
parse 1.14.0 py_0 conda-forge
parse_type 0.5.2 py37_0 conda-forge
parso 0.5.2 py_0 conda-forge
partd 1.1.0 py_0 conda-forge
pcre 8.43 he1b5a44_0 conda-forge
pexpect 4.8.0 py37_0 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pillow 7.0.0 py37hefe7db6_0 conda-forge
pip 20.0.1 py37_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
pluggy 0.13.0 py37_0 conda-forge
poppler 0.67.0 h14e79db_8 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 11.5 hc63931a_2 conda-forge
progressbar2 3.47.0 py_0 conda-forge
proj 6.2.1 hc80f0dc_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.10 py_0 conda-forge
psutil 5.6.7 py37h516909a_0 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
py 1.8.1 py_0 conda-forge
pyarrow 0.15.1 py37h8b68381_1 conda-forge
pyasn1 0.4.8 py_0 conda-forge
pycoast 1.3.2 py_0 conda-forge
pycodestyle 2.5.0 py_0 conda-forge
pycparser 2.19 py37_1 conda-forge
pyct 0.4.6 py_0 conda-forge
pyct-core 0.4.6 py_0 conda-forge
pydap 3.2.2 py37_1000 conda-forge
pydecorate 0.2.1 py_0 conda-forge
pyepsg 0.4.0 py_0 conda-forge
pyflakes 2.1.1 py_0 conda-forge
pygments 2.5.2 py_0 conda-forge
pygrib 2.0.4 py37h55c65ac_0 conda-forge
pyhdf 0.10.2 py37h3a4e923_0 conda-forge
pykdtree 1.3.1 py37hc1659b7_1002 conda-forge
pynio 1.5.5 py37h2e5bc1a_7 conda-forge
pyopengl 3.1.5 py_0 conda-forge
pyopenssl 19.1.0 py37_0 conda-forge
pyorbital 1.5.0 pypi_0 pypi
pyparsing 2.4.6 py_0 conda-forge
pyproj 2.4.2.post1 py37h12732c1_0 conda-forge
pyqt 5.12.3 py37hcca6a23_1 conda-forge
pyqt5 5.13.1 pypi_0 pypi
pyqt5-sip 4.19.18 pypi_0 pypi
pyqtgraph 0.11.0rc0 py_0 conda-forge
pyqtwebengine 5.12.1 pypi_0 pypi
pyresample 1.14.0 py37hb3f55d8_2 conda-forge
pyrsistent 0.15.7 py37h516909a_0 conda-forge
pyscaffold 3.2.2 py_0 conda-forge
pyshp 2.1.0 py_0 conda-forge
pysocks 1.7.1 py37_0 conda-forge
pyspectral 0.8.9 pypi_0 pypi
pytables 3.6.1 py37h9f153d1_1 conda-forge
pytest 5.3.4 py37_0 conda-forge
pytest-cov 2.8.1 py_0 conda-forge
pytest-mock 2.0.0 py37_0 conda-forge
pytest-runner 5.2 py_0 conda-forge
python 3.7.6 h357f687_2 conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python-geotiepoints 1.1.8 pypi_0 pypi
python-utils 2.3.0 py_1 conda-forge
pytz 2019.3 py_0 conda-forge
pyviz_comms 0.7.3 py_0 conda-forge
pywavelets 1.1.1 py37hc1659b7_0 conda-forge
pyyaml 5.2 py37h516909a_0 conda-forge
pyzmq 18.1.1 py37h1768529_0 conda-forge
qt 5.12.5 hd8c4c69_1 conda-forge
qtconsole 4.6.0 py_0 conda-forge
quamash 0.6.1 pypi_0 pypi
rasterio 1.1.1 py37h900e953_0 conda-forge
re2 2020.01.01 he1b5a44_0 conda-forge
readline 8.0 hf8c457e_0 conda-forge
requests 2.22.0 py37_1 conda-forge
rsa 3.4.2 py_1 conda-forge
rtree 0.9.3 py37h7b0cdae_0 conda-forge
s3fs 0.4.0 py_0 conda-forge
s3transfer 0.3.2 py37_0 conda-forge
satpy 0.19.2.dev31+gf537a14d pypi_0 pypi
scikit-image 0.16.2 py37hb3f55d8_0 conda-forge
scipy 1.4.1 py37h921218d_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 45.1.0 py37_0 conda-forge
shapely 1.6.4 py37hec07ddf_1006 conda-forge
six 1.14.0 py37_0 conda-forge
snakeviz 2.0.1 py_0 conda-forge
snappy 1.1.7 he1b5a44_1003 conda-forge
snowballstemmer 2.0.0 py_0 conda-forge
snuggs 1.4.7 py_0 conda-forge
sortedcontainers 2.1.0 py_0 conda-forge
soupsieve 1.9.4 py37_0 conda-forge
sphinx 2.3.1 py_0 conda-forge
sphinxcontrib-applehelp 1.0.1 py_0 conda-forge
sphinxcontrib-devhelp 1.0.1 py_0 conda-forge
sphinxcontrib-htmlhelp 1.0.2 py_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.2 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.3 py_0 conda-forge
sqlalchemy 1.3.13 py37h516909a_0 conda-forge
sqlite 3.30.1 hcee41ef_0 conda-forge
tbb 2018.0.5 h2d50403_0 conda-forge
tblib 1.6.0 py_0 conda-forge
terminado 0.8.3 py37_0 conda-forge
testpath 0.4.4 py_0 conda-forge
thrift-cpp 0.12.0 hf3afdfd_1004 conda-forge
tiledb 1.7.0 hcde45ca_2 conda-forge
tk 8.6.10 hed695b0_0 conda-forge
toolz 0.10.0 py_0 conda-forge
tornado 6.0.3 py37h516909a_0 conda-forge
traitlets 4.3.3 py37_0 conda-forge
trollbufr 0.11.0 pypi_0 pypi
trollimage 1.9.0 pypi_0 pypi
trollsift 0.3.2 pypi_0 pypi
tzcode 2019a h516909a_1002 conda-forge
uriparser 0.9.3 he1b5a44_1 conda-forge
urllib3 1.25.7 py37_0 conda-forge
uwsift 1.0.6 pypi_0 pypi
vispy 0.6.4 py37hf5ce8a7_0 conda-forge
wcwidth 0.1.8 py_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
webob 1.8.6 py_0 conda-forge
wheel 0.33.6 py37_0 conda-forge
widgetsnbextension 3.5.1 py37_0 conda-forge
xarray 0.14.1 py_0 conda-forge
xerces-c 3.2.2 h8412b87_1004 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.9 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
yaml 0.2.2 h516909a_1 conda-forge
zarr 2.4.0 py_0 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zict 1.0.0 py_0 conda-forge
zipp 2.0.0 py_2 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.4 h3b9ef0a_1 conda-forge
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EnhancementError ReportingIncorrect or improved errors from pandasIncorrect or improved errors from pandasStringsString extension data type and string dataString extension data type and string data