Finding melanoma drugs through a probabilistic knowledge graph

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PeerJ Computer Science
For further information on developing web services in Python using SADI, see this tutorial: https://github.com/markwilkinson/SADI-Semantic-Web-Services-Core/wiki/Building-Services-in-Python
PML 3, in development: https://github.com/timrdf/pml. This includes PML 2 constructs that are not covered in PROV-O.

Main article text

 

Introduction

Results

Discussion

Candidate significance

Architecture

Limitations and future work

Materials and Methods

Data fusion

Assertion probability

Semantic web services

Graph expansion using joint probability

User interface

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Jamie Patricia McCusker conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Michel Dumontier conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, performed the computation work, reviewed drafts of the paper.

Rui Yan performed the experiments, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Sylvia He contributed reagents/materials/analysis tools, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Jonathan S. Dordick conceived and designed the experiments, reviewed drafts of the paper.

Deborah L. McGuinness conceived and designed the experiments, wrote the paper, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

Data can be found at https://data.rpi.edu/xmlui/handle/10833/1760.

Funding

The authors received no funding for this work.

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