default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDMariko Okada
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[i1]Hiroaki Yamagiwa, Ryoma Hashimoto, Kiwamu Arakane, Ken Murakami, Shou Soeda, Momose Oyama, Mariko Okada, Hidetoshi Shimodaira
:
Predicting Drug-Gene Relations via Analogy Tasks with Word Embeddings. CoRR abs/2406.00984 (2024)- 2023
- [c19]Shuhei Kimura, Hirotaka Kitajima, Masato Tokuhisa, Mariko Okada:
Inference of Genetic Networks from Steady-State and Pseudo Time-Series of Single-Cell Gene Expression Data using Modified Random Forests. SSCI 2023: 1579-1586 - 2022
- [j16]Keita Iida, Jumpei Kondo, Johannes Nicolaus Wibisana, Masahiro Inoue, Mariko Okada:
ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes. Bioinform. 38(18): 4330-4336 (2022)
2010 – 2019
- 2019
- [j15]Shuhei Kimura, Masato Tokuhisa, Mariko Okada:
Inference of genetic networks using random forests: Assigning different weights for gene expression data. J. Bioinform. Comput. Biol. 17(4): 1950015:1-1950015:21 (2019) - [c18]Shuhei Kimura, Masato Tokuhisa, Akiyuki Uemura, Mariko Okada:
Feature Selection based on Random Forests and its Application to a Modeling of Sewage Treatment Plant. TAAI 2019: 1-6 - 2018
- [c17]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data. BIBE 2018: 98-103 - 2017
- [j14]Trisevgeni Rapakoulia, Xin Gao, Yi Huang, Michiel J. L. de Hoon, Mariko Okada-Hatakeyama, Harukazu Suzuki, Erik Arner:
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment. Bioinform. 33(23): 3696-3700 (2017) - [c16]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Inference of genetic networks from time-series of gene expression levels using random forests. CIBCB 2017: 1-6 - 2016
- [c15]Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama:
Simultaneous execution method of gene clustering and network inference. CIBCB 2016: 1-7 - [c14]Yuji Okamoto, Jun-ichi Imura, Mariko Okada-Hatakeyama:
Observer design of positive quadratic systems. ECC 2016: 843-848 - 2015
- [j13]Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama:
An Effective Method for the Inference of Reduced S-system Models of Genetic Networks. Inf. Media Technol. 10(1): 166-174 (2015) - [j12]Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple:
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response. PLoS Comput. Biol. 11(4) (2015) - [c13]Yuji Okamoto, Jun-ichi Imura, Mariko Okada-Hatakeyama:
Positive quadratic system representation of molecular interaction in a cell. ECC 2015: 1554-1559 - [c12]Shuhei Kimura, Mariko Okada-Hatakeyama:
Improvement of reliabilities of regulations using a hierarchical structure in a genetic network. IJCNN 2015: 1-7 - 2014
- [j11]The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. M. Semple, Yuri Ishizu, Robert S. Young, Margherita Francescatto, Intikhab Alam, Davide Albanese, Gabriel M. Altschuler, Takahiro Arakawa, John A. C. Archer, Peter Arner, Magda Babina, Sarah Rennie, Piotr J. Balwierz, Anthony G. Beckhouse, Swati Pradhan-Bhatt, Judith A. Blake, Antje Blumenthal, Beatrice Bodega, Alessandro Bonetti, James Briggs, Frank Brombacher, A. Maxwell Burroughs, Andrea Califano, Carlo V. Cannistraci, Daniel Carbajo, Yun Chen, Marco Chierici, Yari Ciani, Hans Clevers, Emiliano Dalla, Carrie A. Davis, Michael Detmar, Alexander D. Diehl, Taeko Dohi, Finn Drabløs, Albert S. B. Edge, Matthias Edinger, Karl Ekwall, Mitsuhiro Endoh, Hideki Enomoto, Michela Fagiolini, Lynsey Fairbairn, Hai Fang, Mary C. Farach-Carson, Geoffrey J. Faulkner, Alexander V. Favorov, Malcolm E. Fisher, Martin C. Frith, Rie Fujita, Shiro Fukuda, Cesare Furlanello, Masaaki Furuno, Jun-ichi Furusawa, Teunis B. Geijtenbeek, Andrew P. Gibson, Thomas R. Gingeras, Daniel Goldowitz, Julian Gough, Sven Guhl, Reto Guler, Stefano Gustincich, Thomas J. Ha, Masahide Hamaguchi, Mitsuko Hara, Matthias Harbers, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Takehiro Hashimoto, Meenhard Herlyn, Kelly J. Hitchens, Shannan J. Ho Sui, Oliver M. Hofmann, Ilka Hoof, Fumi Hori, Lukasz Huminiecki, Kei Iida, Tomokatsu Ikawa, Boris R. Jankovic, Hui Jia, Anagha Joshi, Giuseppe Jurman, Bogumil Kaczkowski, Chieko Kai, Kaoru Kaida, Ai Kaiho, Kazuhiro Kajiyama, Mutsumi Kanamori-Katayama, Artem S. Kasianov, Takeya Kasukawa, Shintaro Katayama, Sachi Kato, Shuji Kawaguchi, Hiroshi Kawamoto, Yuki I. Kawamura, Tsugumi Kawashima, Judith S. Kempfle, Tony J. Kenna, Juha Kere, Levon M. Khachigian, Toshio Kitamura, S. Peter Klinken, Alan J. Knox, Miki Kojima, Soichi Kojima, Naoto Kondo, Haruhiko Koseki, Shigeo Koyasu, Sarah Krampitz, Atsutaka Kubosaki, Andrew T. Kwon, Jeroen F. J. Laros, Weonju Lee, Andreas Lennartsson, Kang Li, Berit Lilje, Leonard Lipovich, Alan Mackay-Sim, Ri-ichiroh Manabe, Jessica Cara Mar, Benoit Marchand, Anthony Mathelier, Niklas Mejhert, Alison M. Meynert, Yosuke Mizuno, David A. de Lima Morais, Hiromasa Morikawa, Mitsuru Morimoto, Kazuyo Moro, Efthymios Motakis, Hozumi Motohashi, Christine Mummery, Mitsuyoshi Murata, Sayaka Nagao-Sato, Yutaka Nakachi, Fumio Nakahara, Toshiyuki Nakamura, Yukio Nakamura, Kenichi Nakazato, Erik van Nimwegen, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Tadasuke Nozaki, Soichi Ogishima, Naganari Ohkura, Hiroko Ohmiya, Hiroshi Ohno, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Yasushi Okazaki, Valerio Orlando, Dmitry A. Ovchinnikov, Arnab Pain, Robert Passier, Margaret Patrikakis, Helena Persson, Silvano Piazza, James G. D. Prendergast, Owen J. L. Rackham, Jordan A. Ramilowski, Mamoon Rashid, Timothy Ravasi, Patrizia Rizzu, Marco Roncador, Sugata Roy, Morten B. Rye, Eri Saijyo, Antti Sajantila, Akiko Saka, Shimon Sakaguchi, Mizuho Sakai, Hiroki Sato, Hironori Sato, Suzana Savvi, Alka Saxena, Claudio Schneider, Erik A. Schultes, Gundula G. Schulze-Tanzil, Anita Schwegmann, Thierry Sengstag, Guojun Sheng, Hisashi Shimoji, Yishai Shimoni, Jay W. Shin, Christophe Simon, Daisuke Sugiyama, Takaaki Sugiyama, Masanori Suzuki, Naoko Suzuki, Rolf K. Swoboda, Peter A. C. 't Hoen, Michihira Tagami, Naoko Takahashi, Jun Takai, Hiroshi Tanaka, Hideki Tatsukawa, Zuotian Tatum, Mark Thompson, Hiroo Toyoda, Tetsuro Toyoda, Eivind Valen, Marc van de Wetering, Linda M. van den Berg, Roberto Verardo, Dipti Vijayan, Ilya E. Vorontsov, Wyeth W. Wasserman, Shoko Watanabe, Christine A. Wells, Louise N. Winteringham, Ernst Wolvetang, Emily J. Wood, Yoko Yamaguchi, Masayuki Yamamoto, Misako Yoneda, Yohei Yonekura, Shigehiro Yoshida, Susan E. Zabierowski, Peter G. Zhang, Xiaobei Zhao, Silvia Zucchelli, Kim M. Summers, Harukazu Suzuki, Carsten O. Daub, Jun Kawai, Peter Heutink, Winston Hide, Tom C. Freeman, Boris Lenhard, Vladimir B. Bajic, Martin S. Taylor, Vsevolod J. Makeev, Albin Sandelin, David A. Hume, Piero Carninci, Yoshihide Hayashizaki:
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014) - 2013
- [c11]Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama:
Development of an efficient parameter estimation method for the inference of Vohradský's neural network models of genetic networks. IJCNN 2013: 1-6 - 2012
- [c10]Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama:
Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations. IJCNN 2012: 1-8 - 2011
- [j10]Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano:
A rank-based statistical test for measuring synergistic effects between two gene sets. Bioinform. 27(17): 2399-2405 (2011) - [j9]Yoshimi Naruo, Takeshi Nagashima, Ryoko Ushikoshi-Nakayama, Yuko Saeki, Takashi Nakakuki, Takashi Naka, Hiroshi Tanaka, Shih-Feng Tsai, Mariko Okada-Hatakeyama:
Epidermal growth factor receptor mutation in combination with expression of MIG6 alters gefitinib sensitivity. BMC Syst. Biol. 5: 29 (2011) - [j8]Saswati Dana, Takashi Nakakuki, Mariko Hatakeyama, Shuhei Kimura, Soumyendu Raha:
Computation of restoration of ligand response in the random kinetics of a prostate cancer cell signaling pathway. Comput. Methods Programs Biomed. 101(1): 1-22 (2011) - 2010
- [j7]Yuichi Shiraishi, Shuhei Kimura, Mariko Okada:
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data. Bioinform. 26(8): 1073-1081 (2010) - [j6]Shuhei Kimura, Yuichi Shiraishi, Mariko Okada:
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations. J. Bioinform. Comput. Biol. 8(4): 661-677 (2010) - [c9]Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama:
Effective parameter estimation for S-system models using LPMs and evolutionary algorithms. IEEE Congress on Evolutionary Computation 2010: 1-8 - [c8]Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama:
Bootstrap Analysis of Genetic Networks inferred by the Method Using LPMs. ICCSA Workshops 2010: 296-299
2000 – 2009
- 2009
- [j5]Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama:
Genetic network inference as a series of discrimination tasks. Bioinform. 25(7): 918-925 (2009) - [c7]Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama:
Inference of genetic networks using linear programming machines: Application of a priori knowledge. IJCNN 2009: 1617-1624 - 2008
- [j4]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hideki Maeda, Koki Matsumura, Mariko Hatakeyama:
Function approximation approach to the inference of reduced NGnet models of genetic networks. BMC Bioinform. 9 (2008) - 2007
- [c6]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama:
Inference of Genetic Networks using a Reduced NGnet Model. IJCNN 2007: 932-937 - 2006
- [c5]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama:
Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks. IJCNN 2006: 2218-2225 - 2005
- [j3]Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya:
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinform. 21(7): 1154-1163 (2005) - [c4]Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama:
Inference of genetic networks using neural network models. Congress on Evolutionary Computation 2005: 1738-1745 - [c3]Aki Hasegawa, Kazumi Kuriyama-Matsumura, Xiaomei Yu, Mariko Hatakeyama, Akihiko Konagaya:
Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways. ICDE Workshops 2005: 1157 - 2004
- [j2]Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya:
OBIYagns: a grid-based biochemical simulator with a parameter estimator. Bioinform. 20(10): 1646-1648 (2004) - [j1]Akihiko Konagaya, Fumikazu Konishi, Mariko Hatakeyama, Kenji Satou:
The Superstructure toward Open Bioinformatics Grid. New Gener. Comput. 22(2): 167-176 (2004) - [c2]Akinobu Fukuzaki, Takeshi Nagashima, Kaori Ide, Fumikazu Konishi, Mariko Hatakeyama, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya:
Genome-Wide Functional Annotation Environment forin OBIGrid. LSGRID 2004: 82-91 - 2003
- [c1]Shuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya:
Inference of S-system models of genetic networks using a genetic local search. IEEE Congress on Evolutionary Computation 2003: 631-638
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:23 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
