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2020 – today
- 2024
[j13]Lixuan Mu, Jiangning Song, Tatsuya Akutsu, Tomoya Mori:
DiCleave: a deep learning model for predicting human Dicer cleavage sites. BMC Bioinform. 25(1): 13 (2024)- 2023
- [j12]Tomoya Mori, Toshiro Takase, Kuan-Chun Lan
, Junko Yamane, Cantas Alev, Azuma Kimura, Kenji Osafune, Jun K. Yamashita, Tatsuya Akutsu, Hiroaki Kitano, Wataru Fujibuchi:
eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells. BMC Bioinform. 24(1): 252 (2023) - 2022
- [j11]Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu:
Identification of periodic attractors in Boolean networks using a priori information. PLoS Comput. Biol. 18(1) (2022) - [c8]Tatsuya Akutsu, Tomoya Mori, Naotoshi Nakamura, Satoshi Kozawa, Yuhei Ueno, Thomas N. Sato:
On the Complexity of Tree Edit Distance with Variables. ISAAC 2022: 44:1-44:14 - 2021
- [i1]Tatsuya Akutsu, Tomoya Mori, Naotoshi Nakamura, Satoshi Kozawa, Yuhei Ueno, Thomas N. Sato:
Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas. CoRR abs/2105.04802 (2021) - 2020
- [j10]Feiqi Wang, Tatsuya Akutsu, Tomoya Mori:
Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance. J. Comput. Biol. 27(9): 1443-1451 (2020) - [j9]Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi:
mROS: A Lightweight Runtime Environment of ROS 1 nodes for Embedded Devices. J. Inf. Process. 28: 150-160 (2020)
2010 – 2019
- 2019
- [c7]Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi:
mROS: A Lightweight Runtime Environment for Robot Software Components onto Embedded Devices. HEART 2019: 7:1-7:6 - 2018
- [c6]Hideki Takase, Tomoya Mori, Kazuyoshi Takagi, Naofumi Takagi:
Design concept of a lightweight runtime environment for robot software components onto embedded devices: work-in-progress. EMSOFT 2018: 6 - 2017
- [j8]Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu:
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data. Bioinform. 33(2): 202-209 (2017) - [c5]Tomoya Mori, Yoichi Utsunomiya, Xuejun Tian, Takashi Okuda:
Queueing theoretic approach to job assignment strategy considering various inter-arrival of job in fog computing. APNOMS 2017: 151-156 - 2016
- [j7]Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto:
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models. Comput. Stat. Data Anal. 94: 63-74 (2016) - [j6]Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu:
Exact Identification of the Structure of a Probabilistic Boolean Network from Samples. IEEE ACM Trans. Comput. Biol. Bioinform. 13(6): 1107-1116 (2016) - [c4]Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu:
Similar subtree search using extended tree inclusion. ICDE 2016: 1558-1559 - 2015
- [b1]Tomoya Mori:
Methods for Analyzing Tree-Structured Data and their Applications to Computational Biology. Kyoto University, Japan, 2015 - [j5]Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu:
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks. BMC Syst. Biol. 9: 14 (2015) - [j4]Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp:
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. BMC Syst. Biol. 9: 45 (2015) - [j3]Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu:
Similar Subtree Search Using Extended Tree Inclusion. IEEE Trans. Knowl. Data Eng. 27(12): 3360-3373 (2015) - [c3]Tomoya Mori, Shinsuke Kajioka, Takahiro Uchiya, Ichi Takumi, Hiroshi Matsuo:
Experiments of position estimation by BLE beacons on actual situations. GCCE 2015: 683-684 - 2014
- [j2]Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu:
An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data. J. Comput. Biol. 21(11): 785-798 (2014) - [c2]Shinsuke Kajioka, Tomoya Mori, Takahiro Uchiya, Ichi Takumi, Hiroshi Matsuo:
Experiment of indoor position presumption based on RSSI of Bluetooth LE beacon. GCCE 2014: 337-339 - 2012
- [j1]Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu:
A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees. J. Comput. Biol. 19(10): 1089-1104 (2012) - 2011
- [c1]Tatsuya Akutsu, Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita:
An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures. CISIS 2011: 536-540
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