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ORCIDIon I. Mandoiu
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2020 – today
- 2023
[j61]Mukul S. Bansal
, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky:
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021). J. Comput. Biol. 30(4): 363-365 (2023)- [j60]Sahar Al Seesi, Anas Al-Okaily, Tatiana Shcheglova, Elham Sherafat, Fahad Alqahtani, Adam T. Hagymasi, Anupinder Kaur, Pramod Kumar Srivastava, Ion I. Mandoiu:
GeNeo: A Bioinformatics Toolbox for Genomics-Guided Neoepitope Prediction. J. Comput. Biol. 30(4): 538-551 (2023) - 2022
- [j59]Saurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal:
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 230-242 (2022) - [e13]Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky:
Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers. Lecture Notes in Computer Science 13254, Springer International Publishing 2022, ISBN 978-3-031-17530-5 [contents] - 2021
- [j58]Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky:
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019). J. Comput. Biol. 28(2): 115-116 (2021) - [j57]Marmar Moussa, Ion I. Mandoiu:
SC1: A Tool for Interactive Web-Based Single-Cell RNA-Seq Data Analysis. J. Comput. Biol. 28(8): 820-841 (2021) - [j56]Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky:
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28(8): 842-855 (2021) - [j55]Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky:
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020). J. Comput. Biol. 28(11): 1033-1034 (2021) - [c79]Samuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal:
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference. PSB 2021 - [e12]Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alex Zelikovsky:
Computational Advances in Bio and Medical Sciences - 10th International Conference, ICCABS 2020, Virtual Event, December 10-12, 2020, Revised Selected Papers. Lecture Notes in Computer Science 12686, Springer 2021, ISBN 978-3-030-79289-3 [contents] - 2020
- [j54]Elham Sherafat, Jordan Force, Ion I. Mandoiu:
Semi-supervised learning for somatic variant calling and peptide identification in personalized cancer immunotherapy. BMC Bioinform. 21-S(18): 498 (2020) - [j53]Fahad Alqahtani, Ion I. Mandoiu:
Statistical Mitogenome Assembly with RepeaTs. J. Comput. Biol. 27(9): 1407-1421 (2020) - [c78]Marmar Moussa, Ion I. Mandoiu:
Computational Cell Cycle Analysis of Single Cell RNA-Seq Data. ICCABS 2020: 71-87 - [c77]Fahad Alqahtani, Ion I. Mandoiu:
Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples. ISBRA 2020: 1-12 - [c76]Saurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal:
TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity. ISBRA 2020: 203-216 - [c75]Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky:
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA 2020: 335-343 - [c74]Marmar Moussa, Ion I. Mandoiu:
SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis. ISBRA 2020: 389-397 - [e11]Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky:
Computational Advances in Bio and Medical Sciences - 9th International Conference, ICCABS 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers. Lecture Notes in Computer Science 12029, Springer 2020, ISBN 978-3-030-46164-5 [contents] - [e10]Zhipeng Cai, Ion I. Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo:
Bioinformatics Research and Applications - 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1-4, 2020, Proceedings. Lecture Notes in Computer Science 12304, Springer 2020, ISBN 978-3-030-57820-6 [contents]
2010 – 2019
- 2019
- [j52]Marmar Moussa, Ion I. Mandoiu:
Locality Sensitive Imputation for Single Cell RNA-Seq Data. J. Comput. Biol. 26(8): 822-835 (2019) - [j51]Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1362-1363 (2019) - [c73]Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky:
Workshop on Computational Advances in Molecular Epidemiology. BCB 2019: 561 - [c72]Fahad Alqahtani, Ion I. Mandoiu:
SMART2: Multi-library Statistical Mitogenome Assembly with Repeats. ICCABS 2019: 184-198 - [i9]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [c71]Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky:
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome. BCB 2018: 574 - [c70]Fahad Alqahtani, Ion I. Mandoiu:
Statistical Mitogenome Assembly with Repeats. ICCABS 2018: 1 - [c69]Marmar Moussa, Ion I. Mandoiu:
SC1: A web-based single cell RNA-seq analysis pipeline. ICCABS 2018: 1 - [c68]Marmar Moussa, Ion I. Mandoiu:
Locality Sensitive Imputation for Single-Cell RNA-Seq Data. ISBRA 2018: 347-360 - [p2]Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky:
Practical Approximations of Steiner Trees in Uniform Orientation Metrics. Handbook of Approximation Algorithms and Metaheuristics (1) 2018: 657-669 - [p1]Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky:
QoS Multimedia Multicast Routing. Handbook of Approximation Algorithms and Metaheuristics (2) 2018 - 2017
- [j50]Igor Mandric, Yvette Temate-Tiagueu, Tatiana Shcheglova, Sahar Al Seesi, Alex Zelikovsky, Ion I. Mandoiu:
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data. Bioinform. 33(20): 3302-3304 (2017) - [j49]Ekaterina Gerasimov, Alex Zelikovsky, Ion I. Mandoiu, Yurij Ionov:
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire. BMC Bioinform. 18(8): 244:1-244:6 (2017) - [j48]Robert W. Harrison, Ion I. Mandoiu, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 576-577 (2017) - [c67]Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky:
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology. BCB 2017: 775 - [c66]Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky:
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities. ISBRA 2017: 396-402 - 2016
- [c65]Tyler Daddio, Ion I. Mandoiu:
Pairing T Cell Receptor α and β sequences using pooling and min-cost flows. ICCABS 2016: 1 - 2015
- [j47]Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov:
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. 31(5): 682-690 (2015) - [j46]Mai Hamdalla, Sanguthevar Rajasekaran, David F. Grant, Ion I. Mandoiu:
Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach. J. Chem. Inf. Model. 55(3): 709-718 (2015) - [c64]Ekaterina Nenastyeva, Alex Zelikovsky, Yurij Ionov, Ion I. Mandoiu:
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire. ICCABS 2015: 1 - [e9]Robert W. Harrison, Yaohang Li, Ion I. Mandoiu:
Bioinformatics Research and Applications - 11th International Symposium, ISBRA 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings. Lecture Notes in Computer Science 9096, Springer 2015, ISBN 978-3-319-19047-1 [contents] - 2014
- [j45]Edward Hemphill, James Lindsay, Chih Lee, Ion I. Mandoiu, Craig E. Nelson:
Feature selection and classifier performance on diverse bio- logical datasets. BMC Bioinform. 15(S-13): S4 (2014) - [j44]James Lindsay, Hamed Salooti, Ion I. Mandoiu, Alexander Zelikovsky:
ILP-based maximum likelihood genome scaffolding. BMC Bioinform. 15(S-9): S9 (2014) - [c63]Adrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky:
Deterministic regression algorithm for transcriptome frequency estimation. ICCABS 2014: 1 - [c62]Igor Mandric, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky:
SILP3: Maximum likelihood approach to scaffolding. ICCABS 2014: 1 - 2013
- [j43]Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky:
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. BMC Bioinform. 14(S-9): S2 (2013) - [j42]Mai Hamdalla, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, David F. Grant:
BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space. J. Chem. Inf. Model. 53(3): 601-612 (2013) - [j41]Lochana C. Menikarachchi, Dennis W. Hill, Mai Hamdalla, Ion I. Mandoiu, David F. Grant:
In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics. J. Chem. Inf. Model. 53(9): 2483-2492 (2013) - [j40]Ion I. Mandoiu, Jianxin Wang, Alexander Zelikovsky:
Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1345-1346 (2013) - [c61]Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu:
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies. ICCABS 2013: 1 - [c60]Adrian Caciula, Alex Zelikovsky, Serghei Mangul, James Lindsay, Ion I. Mandoiu:
Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data. ICCABS 2013: 1 - [c59]Gabriel Ilie, Alex Zelikovsky, Ion I. Mandoiu:
Reference assisted nucleic acid sequence reconstruction from mass spectrometry data. ICCABS 2013: 1 - [c58]James Lindsay, Craig E. Nelson, Ion I. Mandoiu:
Towards whole transcriptome deconvolution using single-cell data. ICCABS 2013: 1 - [c57]Nicholas Mancuso, Alexander Artyomenko, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu:
Estimation of viral population structure from amplicon-based reads. ICCABS 2013: 1 - [c56]Serghei Mangul, Sahar Al Seesi, Ion I. Mandoiu, Adrian Caciula, Alex Zelikovsky, Dumitru Brinza:
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data. ICCABS 2013: 1 - [c55]Pavel Skums, Olga Glebova, Alex Zelikovsky, Ion I. Mandoiu, Yuri Khudyakov:
Optimizing pooling strategies for the massive next-generation sequencing of viral samples. ICCABS 2013: 1 - 2012
- [j39]Jianer Chen, Ion I. Mandoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky:
Guest Editors' Introduction. BMC Bioinform. 13(S-10): S1 (2012) - [j38]Serghei Mangul, Adrian Caciula, Dumitru Brinza, Ion I. Mandoiu, Alex Zelikovsky:
TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads. BMC Bioinform. 13(S-18): A11 (2012) - [j37]Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alex Zelikovsky:
Reconstructing viral quasispecies from NGS amplicon reads. Silico Biol. 11(5-6): 237-249 (2012) - [j36]Serghei Mangul, Adrian Caciula, Olga Glebova, Ion I. Mandoiu, Alex Zelikovsky:
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. Silico Biol. 11(5-6): 251-261 (2012) - [c54]James Lindsay, Hamed Salooti, Alexander Zelikovsky, Ion I. Mandoiu:
Scalable genome scaffolding using integer linear programming. BCB 2012: 377-383 - [c53]Mai Hamdalla, David F. Grant, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, Reda A. Ammar:
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics. ICCABS 2012: 1-6 - [c52]James Lindsay, Ion I. Mandoiu, Hamed Salooti, Alexander Zelikovsky:
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming. ICCABS 2012: 1 - [c51]Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky:
Workshop: A maximum likelihood method for quasispecies spectrum assembly. ICCABS 2012: 1 - [c50]Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky:
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution. ICCABS 2012: 1 - [c49]Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky:
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. ICCABS 2012: 1 - [c48]Sahar Al Seesi, Ion I. Mandoiu:
Workshop: Inference of allele specific expression levels from RNA-Seq data. ICCABS 2012: 1 - [e8]Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge:
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-1320-9 [contents] - [e7]Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang:
Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings. Lecture Notes in Computer Science 7292, Springer 2012, ISBN 978-3-642-30190-2 [contents] - 2011
- [j35]Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alex Zelikovsky:
Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms Mol. Biol. 6: 9 (2011) - [j34]Jorge Duitama, Justin Kennedy, Sanjiv Dinakar, Yözen Hernández, Yufeng Wu, Ion I. Mandoiu:
Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads. BMC Bioinform. 12(S-1): S53 (2011) - [j33]Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alex Zelikovsky:
Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinform. 12(S-6): S1 (2011) - [j32]Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky:
Optimal Testing of Digital Microfluidic Biochips. INFORMS J. Comput. 23(4): 518-529 (2011) - [c47]Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu, Alexander Zelikovsky:
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. BIBM Workshops 2011: 94-101 - [c46]Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky:
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes. BIBM Workshops 2011: 118-123 - [c45]Jorge Duitama, Pramod Kumar Srivastava, Ion I. Mandoiu:
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data. ICCABS 2011: 87-92 - [c44]Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alexander Zelikovsky:
Poster: ViSpA: Viral spectrum assembling method. ICCABS 2011: 234 - [c43]James Lindsay, J. Zhang, T. Farnham, Y. Wu, Ion I. Mandoiu, Rachel J. O'Neill, Hamed Salooti, E. Bullwinkel, Alexander Zelikovsky:
Poster: Scaffolding draft genomes using paired sequencing data. ICCABS 2011: 252 - [c42]Marius Nicolae, Ion I. Mandoiu:
Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling. ICCABS 2011: 256 - [c41]Rachel J. O'Neill, James Lindsay, Dawn Carone, Sahar Al Seesi, Thomas Heider, Ion I. Mandoiu, Andrew Pask:
Workshop: The utility of next generation sequencing for genome scale studies. ICCABS 2011: 272 - [c40]Marius Nicolae, Ion I. Mandoiu:
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data. ISBRA 2011: 392-403 - [c39]Serghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky:
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data. WABI 2011: 213-224 - [e6]Ion I. Mandoiu, Satoru Miyano, Teresa M. Przytycka, Sanguthevar Rajasekaran:
IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011, Orlando, FL, USA, February 3-5, 2011. IEEE Computer Society 2011, ISBN 978-1-61284-851-8 [contents] - 2010
- [j31]Ion I. Mandoiu, Giri Narasimhan, Yi Pan, Yanqing Zhang:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 7(4): 577-578 (2010) - [c38]Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky:
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. WABI 2010: 202-214 - [i8]Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alex Zelikovsky:
Estimation of alternative splicing isoform frequencies from RNA-Seq data. Structure Discovery in Biology: Motifs, Networks & Phylogenies 2010
2000 – 2009
- 2009
- [j30]Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mandoiu, Craig E. Nelson:
The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution. J. Comput. Biol. 16(10): 1429-1444 (2009) - [j29]Ion I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 6(2): 178-179 (2009) - [c37]Ion I. Mandoiu:
Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads. BICoB 2009: 52-53 - [c36]Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu:
Imputation-Based Local Ancestry Inference in Admixed Populations. ISBRA 2009: 221-233 - [e5]Ion I. Mandoiu, Giri Narasimhan, Yanqing Zhang:
Bioinformatics Research and Applications, 5th International Symposium, ISBRA 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings. Lecture Notes in Computer Science 5542, Springer 2009, ISBN 978-3-642-01550-2 [contents] - [i7]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
GEDI: Scalable Algorithms for Genotype Error Detection and Imputation. CoRR abs/0911.1765 (2009) - 2008
- [j28]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. J. Comput. Biol. 15(9): 1155-1171 (2008) - [j27]Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc:
Highly Scalable Genotype Phasing by Entropy Minimization. IEEE ACM Trans. Comput. Biol. Bioinform. 5(2): 252-261 (2008) - [j26]Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 321-322 (2008) - [c35]Bhaskar DasGupta, Jin Jun, Ion I. Mandoiu:
Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP. APBC 2008: 353-362 - [c34]Sudha Balla, Sanguthevar Rajasekaran, Ion I. Mandoiu:
Faster greedy algorithms for Multiple Degenerate Primer Selection. BIBE 2008: 1-4 - [c33]Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mandoiu, Craig E. Nelson:
Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution. RECOMB-CG 2008: 40-54 - [e4]Ion I. Mandoiu, Raj Sunderraman, Alexander Zelikovsky:
Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings. Lecture Notes in Computer Science 4983, Springer 2008, ISBN 978-3-540-79449-3 [contents] - [e3]Ion I. Mandoiu, Andrew A. Kennings:
The Tenth International Workshop on System-Level Interconnect Prediction (SLIP 2008), Newcastle, UK, April 5-8, 2008, Proceedings. ACM 2008, ISBN 978-1-59593-918-0 [contents] - 2007
- [j25]Sudha Balla, Sanguthevar Rajasekaran, Ion I. Mandoiu:
Efficient Algorithms for degenerate Primer Search. Int. J. Found. Comput. Sci. 18(4): 899-910 (2007) - [j24]Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky, Marius Zimand:
Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks. J. Univers. Comput. Sci. 13(1): 1-3 (2007) - [j23]Andrew B. Kahng, Ion I. Mandoiu, Xu Xu, Alexander Zelikovsky:
Enhanced Design Flow and Optimizations for Multiproject Wafers. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 26(2): 301-311 (2007) - [j22]Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 513-514 (2007) - [c32]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. WABI 2007: 73-84 - [e2]Ion I. Mandoiu, Alexander Zelikovsky:
Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings. Lecture Notes in Computer Science 4463, Springer 2007, ISBN 978-3-540-72030-0 [contents] - [e1]Andrew A. Kennings, Ion I. Mandoiu:
The Ninth International Workshop on System-Level Interconnect Prediction (SLIP 2007), Austin, Texas, USA, March 17-18, 2007, Proceedings. ACM 2007, ISBN 978-1-59593-622-6 [contents] - [r3]Ion I. Mandoiu, Andrew B. Kahng, Christoph Albrecht, Alexander Zelikovsky:
Multicommodity Flow Algorithms for Buffered Global Routing. Handbook of Approximation Algorithms and Metaheuristics 2007 - [r2]Ion I. Mandoiu, Andrew B. Kahng, Alexander Zelikovsky:
Practical Approximations of Steiner Trees in Uniform Orientation Metrics. Handbook of Approximation Algorithms and Metaheuristics 2007 - [r1]Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky:
QoS Multimedia Multicast Routing. Handbook of Approximation Algorithms and Metaheuristics 2007 - 2006
- [j21]Ion I. Mandoiu, Dragos Trinca:
Exact and Approximation Algorithms for DNA Tag Set Design. J. Comput. Biol. 13(3): 732-744 (2006) - [j20]Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky:
Computer-Aided Optimization of DNA Array Design and Manufacturing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 25(2): 305-320 (2006) - [j19]Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky:
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks. Wirel. Networks 12(3): 287-299 (2006) - [c31]Bogdan Pasaniuc, Ion I. Mandoiu:
Highly Scalable Genotype Phasing by Entropy Minimization. EMBC 2006: 3482-3486 - [c30]Ion I. Mandoiu, Claudia Prajescu:
High-Throughput SNP Genotyping by SBE/SBH. International Conference on Computational Science (2) 2006: 742-749 - [c29]Mohammad Taghi Hajiaghayi, Kamal Jain, Lap Chi Lau, Ion I. Mandoiu, Alexander Russell, Vijay V. Vazirani:
Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping. International Conference on Computational Science (2) 2006: 758-766 - 2005
- [j18]Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky:
Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem. Algorithmica 42(2): 109-120 (2005) - [j17]Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman:
DNA-BAR: distinguisher selection for DNA barcoding. Bioinform. 21(16): 3424-3426 (2005) - [j16]Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman:
Highly scalable algorithms for robust string barcoding. Int. J. Bioinform. Res. Appl. 1(2): 145-161 (2005) - [j15]Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Bo Yao:
The Y architecture for on-chip interconnect: analysis and methodology. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 24(4): 588-599 (2005) - [j14]Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, Puneet Sharma:
Layout-aware scan chain synthesis for improved path delay fault coverage. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 24(7): 1104-1114 (2005) - [j13]Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca:
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays. Trans. Comp. Sys. Biology 2: 124-137 (2005) - [c28]Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman:
Improved algorithms for multiplex PCR primer set selection with amplification length constraints. APBC 2005: 41-50 - [c27]Ion I. Mandoiu, Dragos Trinca:
Exact and Approximation Algorithms for DNA Tag Set Design. CPM 2005: 383-393 - [c26]Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca:
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays. International Conference on Computational Science (2) 2005: 994-1002 - [c25]Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman:
Highly Scalable Algorithms for Robust String Barcoding. International Conference on Computational Science (2) 2005: 1020-1028 - [i6]Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca:
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays. CoRR abs/cs/0502054 (2005) - [i5]Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman:
Highly Scalable Algorithms for Robust String Barcoding. CoRR abs/cs/0502065 (2005) - [i4]Ion I. Mandoiu, Dragos Trinca:
Exact and Approximation Algorithms for DNA Tag Set Design. CoRR abs/cs/0503057 (2005) - [i3]Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky:
Multicommodity Flow Algorithms for Buffered Global Routing. CoRR abs/cs/0508045 (2005) - [i2]Ion I. Mandoiu, Claudia Prajescu:
High-Throughput SNP Genotyping by SBE/SBH. CoRR abs/cs/0512052 (2005) - 2004
- [j12]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Scalable Heuristics for Design of DNA Probe Arrays. J. Comput. Biol. 11(2/3): 429-447 (2004) - [j11]Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky:
Selecting Forwarding Neighbors in Wireless Ad Hoc Networks. Mob. Networks Appl. 9(2): 101-111 (2004) - [j10]Andrew B. Kahng, Bao Liu, Ion I. Mandoiu:
Nontree routing for reliability and yield improvement [IC layout]. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 23(1): 148-156 (2004) - [c24]Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Xu Xu, Alexander Zelikovsky:
Multi-project reticle floorplanning and wafer dicing. ISPD 2004: 70-77 - [i1]Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman:
Approximation Algorithms for Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints. CoRR cs.DS/0406053 (2004) - 2003
- [j9]Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky:
Minimum buffered routing with bounded capacitive load for slew rate and reliability control. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 22(3): 241-253 (2003) - [j8]Christoph Albrecht, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky:
On the skew-bounded minimum-buffer routing tree problem. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 22(7): 937-945 (2003) - [c23]Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky:
Highly scalable algorithms for rectilinear and octilinear Steiner trees. ASP-DAC 2003: 827-833 - [c22]Gruia Calinescu, Cristina G. Fernandes, Ion I. Mandoiu, Alexander Olshevsky, K. Yang, Alexander Zelikovsky:
Primal-dual algorithms for QoS multimedia multicast. GLOBECOM 2003: 3631-3635 - [c21]Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Bo Yao:
The Y-Architecture for On-Chip Interconnect: Analysis and Methodology. ICCAD 2003: 13-20 - [c20]Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky:
Evaluation of Placement Techniques for DNA Probe Array Layout. ICCAD 2003: 262-269 - [c19]Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, Puneet Sharma:
Layout-Aware Scan Chain Synthesis for Improved Path Delay Fault Coverage. ICCAD 2003: 754-759 - [c18]Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky:
Design Flow Enhancements for DNA Arrays. ICCD 2003: 116- - [c17]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Engineering a scalable placement heuristic for DNA probe arrays. RECOMB 2003: 148-156 - [c16]Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang:
Estimation of wirelength reduction for lambda-geometry vs. manhattan placement and routing. SLIP 2003: 71-76 - [c15]Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky:
Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem. WADS 2003: 401-411 - [c14]Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky:
Power efficient range assignment in ad-hoc wireless networks. WCNC 2003: 1889-1894 - 2002
- [j7]Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani, David P. Williamson:
A primal-dual schema based approximation algorithm for the element connectivity problem. J. Algorithms 45(1): 1-15 (2002) - [j6]Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky:
Provably good global buffering by generalized multiterminalmulticommodity flow approximation. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 21(3): 263-274 (2002) - [c13]Andrew B. Kahng, Bao Liu, Ion I. Mandoiu:
Non-tree routing for reliability and yield improvement. ICCAD 2002: 260-266 - [c12]C. Bandela, Yu Chen, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky:
Auctions with Buyer Preferences. Information Systems: The e-Business Challenge 2002: 223-238 - [c11]Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky:
Symmetric Connectivity with Minimum Power Consumption in Radio Networks. IFIP TCS 2002: 119-130 - [c10]Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky:
Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing. ASP-DAC/VLSI Design 2002: 580- - [c9]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Border Length Minimization in DNA Array Design. WABI 2002: 435-448 - 2001
- [j5]Alexander Zelikovsky, Ion I. Mandoiu:
Practical Approximation Algorithms for Zero- and Bounded-Skew Trees. SIAM J. Discret. Math. 15(1): 97-111 (2001) - [c8]Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky:
Provably good global buffering by multi-terminal multicommodity flow approximation. ASP-DAC 2001: 120-125 - [c7]Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky:
Selecting forwarding neighbors in wireless Ad Hoc networks. DIAL-M 2001: 34-43 - [c6]Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky:
Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control. ICCAD 2001: 408- - [c5]Alexander Zelikovsky, Ion I. Mandoiu:
Practical approximation algorithms for zero- and bounded-skew trees. SODA 2001: 407-416 - [c4]Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky:
Practical Approximation Algorithms for Separable Packing Linear Programs. WADS 2001: 325-337 - 2000
- [j4]Ion I. Mandoiu, Alexander Zelikovsky:
A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points. Inf. Process. Lett. 75(4): 165-167 (2000) - [j3]Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganley:
A new heuristic for rectilinear Steiner trees. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 19(10): 1129-1139 (2000) - [c3]Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky:
Provably Good Global Buffering Using an Available Buffer Block Plan. ICCAD 2000: 104-109
1990 – 1999
- 1999
- [c2]Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganley:
A new heuristic for rectilinear Steiner trees. ICCAD 1999: 157-162 - [c1]Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani, David P. Williamson:
A Primal-Dual Schema Based Approximation Algorithm for the Element Connectivity Problem. SODA 1999: 484-489 - 1998
- [j2]Ion I. Mandoiu:
Optimum Extensions of Prefix Codes. Inf. Process. Lett. 66(1): 35-40 (1998) - [j1]Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani:
The 'Art of Trellis Decoding' Is Computationally Hardi - For Large Fields. IEEE Trans. Inf. Theory 44(3): 1211-1214 (1998)
Coauthor Index
Alex Zelikovsky
aka: Alexander Zelikovsky
aka: Alexander Zelikovsky
[j61] [e13] [j58] [j56] [j55] [e12] [c75] [e11] [j51] [c73] [i9] [c71] [p2] [p1] [j50] [j49] [j48] [c67] [c66] [j47] [c64] [j44] [c63] [c62] [j43] [j40] [c61] [c60] [c59] [c57] [c56] [c55] [j39] [j38] [j37] [j36] [c54] [c52] [c51] [c50] [c49] [j35] [j33] [j32] [c47] [c46] [c44] [c43] [c39] [c38] [i8] [j29] [j26] [e4] [j24] [j23] [j22] [e2] [r3] [r2] [r1] [j20] [j19] [j18] [i3] [j12] [j11] [c24] [j9] [j8] [c23] [c22] [c20] [c18] [c17] [c15] [c14] [j6] [c12] [c11] [c10] [c9] [j5] [c8] [c7] [c6] [c5] [c4] [j4] [c3]
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