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ORCIDPablo Meyer 0001
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- affiliation: IBM Thomas J. Watson Research Center, Center for Computational Health, Yorktown Heights, NY, USA
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2020 – today
- 2024
[j17]Shruthi Chari, Oshani Seneviratne, Mohamed F. Ghalwash, Sola Shirai, Daniel M. Gruen, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness:
Explanation Ontology: A general-purpose, semantic representation for supporting user-centered explanations. Semantic Web 15(4): 959-989 (2024)- [i7]Parthasarathy Suryanarayanan, Yunguang Qiu, Shreyans Sethi, Diwakar Mahajan, Hongyang Li, Yuxin Yang, Elif K. Eyigöz, Aldo Guzmán-Sáenz, Daniel E. Platt, Timothy H. Rumbell, Kenney Ng, Sanjoy Dey, Myson Burch, Bum Chul Kwon, Pablo Meyer, Feixiong Cheng, Jianying Hu, Joseph A. Morrone:
Multi-view biomedical foundation models for molecule-target and property prediction. CoRR abs/2410.19704 (2024) - 2023
- [j16]Shruthi Chari
, Prasant Acharya, Daniel M. Gruen, Olivia Zhang, Elif K. Eyigöz, Mohamed F. Ghalwash, Oshani Seneviratne, Fernando J. Suarez Saiz, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness:
Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes. Artif. Intell. Medicine 137: 102498 (2023) - [i6]Shruthi Chari, Prasant Acharya, Daniel M. Gruen, Olivia Zhang, Elif K. Eyigöz, Mohamed F. Ghalwash, Oshani Seneviratne, Fernando J. Suarez Saiz, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness:
Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes. CoRR abs/2302.05752 (2023) - [i5]Gregor Stiglic, Leon Kopitar, Lucija Gosak, Primoz Kocbek, Zhe He, Prithwish Chakraborty, Pablo Meyer, Jiang Bian:
Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative AI. CoRR abs/2307.15715 (2023) - 2022
- [j15]Sanjoy Dey, Prithwish Chakraborty, Bum Chul Kwon, Amit Dhurandhar, Mohamed F. Ghalwash, Fernando J. Suarez Saiz, Kenney Ng, Daby Sow, Kush R. Varshney, Pablo Meyer:
Human-centered explainability for life sciences, healthcare, and medical informatics. Patterns 3(5): 100493 (2022) - [i4]Steve Nyemba, Chao Yan, Ziqi Zhang, Amol Rajmane, Pablo Meyer, Prithwish Chakraborty, Bradley A. Malin:
Distillation to Enhance the Portability of Risk Models Across Institutions with Large Patient Claims Database. CoRR abs/2207.02445 (2022) - 2021
- [i3]Parthasarathy Suryanarayanan, Prithwish Chakraborty, Piyush Madan, Kibichii Bore, William Ogallo, Rachita Chandra, Mohamed F. Ghalwash, Italo Buleje, Sekou L. Remy, Shilpa Mahatma, Pablo Meyer, Jianying Hu:
Disease Progression Modeling Workbench 360. CoRR abs/2106.13265 (2021) - [i2]Shruthi Chari, Prithwish Chakraborty, Mohamed F. Ghalwash, Oshani Seneviratne, Elif K. Eyigöz, Daniel M. Gruen, Fernando J. Suarez Saiz, Ching-Hua Chen, Pablo Meyer Rojas, Deborah L. McGuinness:
Leveraging Clinical Context for User-Centered Explainability: A Diabetes Use Case. CoRR abs/2107.02359 (2021)
2010 – 2019
- 2015
- [j14]Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica:
Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. 31(4): 451-452 (2015) - [j13]Michael Biehl, Peter J. Sadowski, Gyan Bhanot, Erhan Bilal, Adel Dayarian, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Michael D. Zeller, Sahand Hormoz:
Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge. Bioinform. 31(4): 453-461 (2015) - [j12]Adel Dayarian, Roberto Romero, Zhiming Wang, Michael Biehl, Erhan Bilal, Sahand Hormoz, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Gyan Bhanot, Feng Luo, Adi L. Tarca:
Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. Bioinform. 31(4): 462-470 (2015) - [j11]Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng:
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. 31(4): 471-483 (2015) - [j10]Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin:
A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. 31(4): 484-491 (2015) - [j9]Sahand Hormoz, Gyan Bhanot, Michael Biehl, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Adel Dayarian:
Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets. Bioinform. 31(4): 492-500 (2015) - [j8]Christoph Hafemeister, Roberto Romero, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Richard Bonneau, Adi L. Tarca:
Inter-species pathway perturbation prediction via data-driven detection of functional homology. Bioinform. 31(4): 501-508 (2015) - [j7]Enrique Hernández-Lemus, Wentian Li, Pablo Meyer:
Advances in systems biology - New trends and perspectives. Comput. Biol. Chem. 59: 1-2 (2015) - [j6]Stacey M. Gifford, Pablo Meyer:
Enzyme function is regulated by its localization. Comput. Biol. Chem. 59: 113-122 (2015) - [j5]Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer:
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput. Biol. 11(5) (2015) - [i1]Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez:
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4: 1030 (2015) - 2014
- [j4]Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez:
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst. Biol. 8: 13 (2014) - [j3]Pablo Meyer, Guillermo A. Cecchi, Gustavo Stolovitzky:
Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria. BMC Syst. Biol. 8: 131 (2014) - 2013
- [j2]Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators:
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29(22): 2892-2899 (2013) - 2012
- [j1]Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky:
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. 28(9): 1193-1201 (2012)
Coauthor Index
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