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2020 – today
- 2024
[j10]Hirak Sarkar, Uthsav Chitra, Julian Gold, Benjamin J. Raphael:
A count-based model for delineating cell-cell interactions in spatial transcriptomics data. Bioinform. 40(Supplement_1): i481-i489 (2024)- [c4]Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin J. Raphael:
Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning. RECOMB 2024: 368-371 - 2022
- [j9]Wancen Mu, Hirak Sarkar
, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love:
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets. Bioinform. 38(10): 2773-2780 (2022) - 2021
- [j8]Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love:
Compression of quantification uncertainty for scRNA-seq counts. Bioinform. 37(12): 1699-1707 (2021) - 2020
- [b1]Hirak Sarkar:
Computational approaches for improving the accuracy and efficiency of RNA-seq analysis. University of Maryland, College Park, MD, USA, 2020 - [j7]Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro:
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data. Bioinform. 36(Supplement-1): i102-i110 (2020) - [j6]Avi Srivastava, Laraib Malik, Hirak Sarkar, Rob Patro:
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification. Bioinform. 36(Supplement-1): i292-i299 (2020) - [c3]Rupak Sarkar, Sayantan Mahinder, Hirak Sarkar, Ashiqur R. KhudaBukhsh:
Social Media Attributions in the Context of Water Crisis. EMNLP (1) 2020: 1402-1412 - [i3]Rupak Sarkar, Hirak Sarkar, Sayantan Mahinder, Ashiqur R. KhudaBukhsh:
Social Media Attributions in the Context of Water Crisis. CoRR abs/2001.01697 (2020)
2010 – 2019
- 2019
- [j5]Hirak Sarkar, Avi Srivastava, Rob Patro:
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level. Bioinform. 35(14): i136-i144 (2019) - 2018
- [j4]Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro:
A space and time-efficient index for the compacted colored de Bruijn graph. Bioinform. 34(13): i169-i177 (2018) - [c2]Hirak Sarkar, Mohsen Zakeri, Laraib Malik, Rob Patro:
Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript Quantification. BCB 2018: 27-36 - 2017
- [j3]Hirak Sarkar, Rob Patro:
Quark enables semi-reference-based compression of RNA-seq data. Bioinform. 33(21): 3380-3386 (2017) - 2016
- [j2]Avi Srivastava, Hirak Sarkar, Nitish Gupta, Rob Patro:
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes. Bioinform. 32(12): 192-200 (2016) - [i2]Avi Srivastava, Hirak Sarkar, Laraib Malik, Rob Patro:
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes. CoRR abs/1604.03250 (2016) - 2015
- [j1]Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar:
Voronoi game on graphs. Theor. Comput. Sci. 562: 270-282 (2015) - 2014
- [i1]Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar:
Voronoi Game on Graphs. CoRR abs/1407.8474 (2014) - 2013
- [c1]Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar:
Voronoi Game on Graphs. WALCOM 2013: 77-88
Coauthor Index
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