Summarization for Generative Relation Extraction in the Microbiome Domain. - Khettari, Oumaima El; Quiniou, Solen; Chaffron, Samuel (CoRR, 2025)

Mention-Agnostic Information Extraction for Ontological Annotation of Biomedical Articles. - Khettari, Oumaima El; Nishida, Noriki; Liu, Shanshan; Munne, Rumana Ferdous; Yamagata, Yuki; Quiniou, Solen; Chaffron, Samuel; Matsumoto, Yuji (2024)

Building a Corpus for Biomedical Relation Extraction of Species Mentions. - Khettari, Oumaima El; Quiniou, Solen; Chaffron, Samuel (2023)

Annotation d'interactions hôte-microbiote dans des articles scientifiques par similarité sémantique avec une ontologie. - Khettari, Oumaima El; Quiniou, Solen; Chaffron, Samuel (2023)

Building a Corpus for Biomedical Relation Extraction of Species Mentions. - Khettari, Oumaima El; Quiniou, Solen; Chaffron, Samuel (CoRR, 2023)

MiBiOmics: an interactive web application for multi-omics data exploration and integration. - Zoppi, Johanna; Guillaume, Jean-François; Neunlist, Michel; Chaffron, Samuel (BMC Bioinform., 2021)

STRING 8 - a global view on proteins and their functional interactions in 630 organisms. - Jensen, Lars Juhl; Kuhn, Michael; Stark, Manuel; Chaffron, Samuel; Creevey, Christopher J.; Muller, Jean; Doerks, Tobias; Julien, Philippe; Roth, Alexander; Simonovic, Milan; Bork, Peer; Mering, Christian von (Nucleic Acids Res., 2009)

STRING 7 - recent developments in the integration and prediction of protein interactions. - Mering, Christian von; Jensen, Lars Juhl; Kuhn, Michael; Chaffron, Samuel; Doerks, Tobias; Krüger, Beate; Snel, Berend; Bork, Peer (Nucleic Acids Res., 2007)