An impossible combinatorial counting method in distance geometry. - Abud, Germano; Alencar, Jorge; Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (Discret. Appl. Math., 2024)

Influence of Stereochemistry in a Local Approach for Calculating Protein Conformations. - Rocha, Wagner; Liberti, Leo; Mucherino, Antonio; Malliavin, Thérèse E. (J. Chem. Inf. Model., 2024)

Impact of Local Geometry on Methods for Constructing Protein Conformations. - Rocha, Wagner; Malliavin, Therese E.; Mucherino, Antonio; Liberti, Leo (2024)

The Coherent Multi-representation Problem for Protein Structure Determination. - Mucherino, Antonio; Lin, Jung-Hsin (2023)

The Coherent Multi-representation Problem with Applications in Structural Biology. - Mucherino, Antonio (2023)

Variable Neighborhood Search in Hamming Space. - Hengeveld, Simon B.; Mucherino, Antonio (2023)

Preface: special issue on optimization in distance geometry. - Báez-Sánchez, Andrés D.; Lavor, Carlile; Mucherino, Antonio (J. Glob. Optim., 2022)

On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation. - Hengeveld, Simon B.; Mucherino, Antonio (2022)

A GPU approach to distance geometry in 1D: an implementation in C/CUDA. - Hengeveld, Simon B.; Mucherino, Antonio (2022)

A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. - Gonçalves, Douglas Soares; Mucherino, Antonio (2022)

Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem. - Lavor, Carlile; Souza, Michael; Carvalho, Luiz Mariano; Gonçalves, Douglas Soares; Mucherino, Antonio (Appl. Math. Comput., 2021)

The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods. - Omer, Jérémy; Mucherino, Antonio (Open J. Math. Optim., 2021)

A study on the impact of the distance types involved in protein structure determination by NMR. - Hengeveld, Simon B.; Malliavin, Therese E.; Lin, J. H.; Liberti, Leo; Mucherino, Antonio (2021)

On the Representation of Human Motions and Distance-based Retargeting. - Hengeveld, Simon B.; Mucherino, Antonio (2021)

A Linear Program for Points of Interest Relocation in Adaptive Maps. - Hengeveld, Simon B.; Plastria, F.; Mucherino, Antonio; Pelta, David A. (2021)

binMeta: A New Java Package for Meta-heuristic Searches. - Mucherino, Antonio (2021)

Solving the One-dimensional Distance Geometry Problem by Optical Computing. - Hengeveld, Simon B.; Silva, N. Rubiano da; Gonçalves, Douglas Soares; Ribeiro, Paulo H. Souto; Mucherino, Antonio (CoRR, 2021)

An impossible utopia in distance geometry. - Abud, Germano; Alencar, Jorge; Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (CoRR, 2021)

Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza. - Mucherino, Antonio; Lavor, Carlile (Optim. Lett., 2020)

The K-discretization and K-incident graphs for discretizable Distance Geometry. - Abud, Germano; Alencar, Jorge; Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (Optim. Lett., 2020)

An application-based characterization of dynamical distance geometry problems. - Mucherino, Antonio; Omer, Jérémy; Hoyet, Ludovic; Giordano, Paolo Robuffo; Multon, Franck (Optim. Lett., 2020)

An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems. - Mucherino, Antonio (2020)

MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data. - Mucherino, Antonio; Gonçalves, Douglas Soares; Liberti, Leo; Lin, Jung-Hsin; Lavor, Carlile; Maculan, Nelson (2020)

Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach. - Malliavin, Thérèse E.; Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (J. Chem. Inf. Model., 2019)

An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data. - Mucherino, Antonio; Lin, Jung-Hsin (2019)

A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data. - Mucherino, Antonio; Lin, Jung-Hsin; Gonçalves, Douglas Soares (2019)

DSPP: Deep Shape and Pose Priors of Humans. - Hu, Shanfeng; Shum, Hubert P. H.; Mucherino, Antonio (2019)

On the Discretization of Distance Geometry: Theory, Algorithms and Applications. - Mucherino, Antonio (2018)

Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. - Billinge, Simon J. L.; Duxbury, Phillip M.; Gonçalves, Douglas Soares; Lavor, Carlile; Mucherino, Antonio (Ann. Oper. Res., 2018)

A symmetry-based splitting strategy for discretizable distance geometry problems. - Fidalgo, Felipe; Gonçalves, Douglas Soares; Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (J. Glob. Optim., 2018)

Feature Selection in Time-Series Motion Databases. - Mucherino, Antonio; Elain, Florian; Hoyet, Ludovic; Kulpa, Richard (2018)

Surface based motion retargeting by preserving spatial relationship. - Liu, Zhiguang; Mucherino, Antonio; Hoyet, Ludovic; Multon, Franck (2018)

Recent advances on the interval distance geometry problem. - Gonçalves, Douglas Soares; Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (J. Glob. Optim., 2017)

A Distance-Based Approach for Human Posture Simulations. - Mucherino, Antonio; Gonçalves, Douglas Soares; Bernardin, Antonin; Hoyet, Ludovic; Multon, Franck (2017)

An Approach to Dynamical Distance Geometry. - Mucherino, Antonio; Gonçalves, Douglas Soares (2017)

Normalized Euclidean distance matrices for human motion retargeting. - Bernardin, Antonin; Hoyet, Ludovic; Mucherino, Antonio; Gonçalves, Douglas Soares; Multon, Franck (2017)

Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. - Billinge, Simon J. L.; Duxbury, Phillip M.; Gonçalves, Douglas Soares; Lavor, Carlile; Mucherino, Antonio (4OR, 2016)

Optimal partial discretization orders for discretizable distance geometry. - Gonçalves, Douglas Soares; Mucherino, Antonio (Int. Trans. Oper. Res., 2016)

InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem. - Fidanova, Stefka; Roeva, Olympia; Mucherino, Antonio; Kapanova, Kristina G. (2016)

A New Approach to the Discretization of Multidimensional Scaling. - Mucherino, Antonio; Gramacho, Warley; Lin, Jung-Hsin; Lavor, Carlile (2016)

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. - Cassioli, Andrea; Bardiaux, Benjamin; Bouvier, Guillaume; Mucherino, Antonio; Alves, Rafael; Liberti, Leo; Nilges, Michael; Lavor, Carlile; Malliavin, Thérèse E. (BMC Bioinform., 2015)

Preface. - Mucherino, Antonio; Rodrigues, Rosiane de Freitas; Lavor, Carlile (Discret. Appl. Math., 2015)

Ant Colony Optimization with environment changes: An application to GPS surveying. - Mucherino, Antonio; Fidanova, Stefka; Ganzha, Maria (2015)

A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry. - Mucherino, Antonio (2015)

Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint. - Mucherino, Antonio (2015)

On the number of realizations of certain Henneberg graphs arising in protein conformation. - Liberti, Leo; Masson, Benoît; Lee, Jon; Lavor, Carlile; Mucherino, Antonio (Discret. Appl. Math., 2014)

Discretization orders for protein side chains. - Costa, Virginia; Mucherino, Antonio; Lavor, Carlile; Cassioli, Andrea; Carvalho, Luiz Mariano; Maculan, Nelson (J. Glob. Optim., 2014)

Discretization orders and efficient computation of cartesian coordinates for distance geometry. - Gonçalves, Douglas Soares; Mucherino, Antonio (Optim. Lett., 2014)

Euclidean Distance Geometry and Applications. - Liberti, Leo; Lavor, Carlile; Maculan, Nelson; Mucherino, Antonio (SIAM Rev., 2014)

BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. - Seo, Jeongyeon; Kim, Jae-Kwan; Ryu, Joonghyun; Lavor, Carlile; Mucherino, Antonio; Kim, Deok-Soo (Trans. Comput. Sci., 2014)

An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry. - Gonçalves, Douglas Soares; Mucherino, Antonio; Lavor, Carlile (2014)

The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances. - Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (J. Glob. Optim., 2013)

Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry. - Gonçalves, Douglas Soares; Mucherino, Antonio; Lavor, Carlile (2013)

On the Identification of Discretization Orders for Distance Geometry with Intervals. - Mucherino, Antonio (2013)

The integration of Clifford Algebra in the iBP algorithm for the DMDGP. - Alves, Rafael; Cassioli, Andrea; Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (2013)

The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins. - Liberti, Leo; Lavor, Carlile; Mucherino, Antonio (2013)

Distance Geometry in Structural Biology: New Perspectives. - Malliavin, Thérèse E.; Mucherino, Antonio; Nilges, Michael (2013)

A VNS-Based Heuristic for Feature Selection in Data Mining. - Mucherino, Antonio; Liberti, Leo (2013)

Distance Geometry: Theory, Methods, and Applications (Springer, 2013)

The discretizable molecular distance geometry problem. - Lavor, Carlile; Liberti, Leo; Maculan, Nelson; Mucherino, Antonio (Comput. Optim. Appl., 2012)

Recent advances on the Discretizable Molecular Distance Geometry Problem. - Lavor, Carlile; Liberti, Leo; Maculan, Nelson; Mucherino, Antonio (Eur. J. Oper. Res., 2012)

Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem. - Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (J. Bioinform. Comput. Biol., 2012)

Discretization orders for distance geometry problems. - Lavor, Carlile; Lee, Jon; John, Audrey Lee-St.; Liberti, Leo; Mucherino, Antonio; Sviridenko, Maxim (Optim. Lett., 2012)

The discretizable distance geometry problem. - Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (Optim. Lett., 2012)

On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains. - Costa, Virginia; Mucherino, Antonio; Lavor, Carlile; Carvalho, Luiz Mariano; Maculan, Nelson (2012)

A Parallel BP Algorithm for the Discretizable Distance Geometry Problem. - Gramacho, Warley; Mucherino, Antonio; Lavor, Carlile; Maculan, Nelson (2012)

Molecular distance geometry methods: from continuous to discrete. - Liberti, Leo; Lavor, Carlile; Mucherino, Antonio; Maculan, Nelson (Int. Trans. Oper. Res., 2011)

On the computation of protein backbones by using artificial backbones of hydrogens. - Lavor, Carlile; Mucherino, Antonio; Liberti, Leo; Maculan, Nelson (J. Glob. Optim., 2011)

A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. - Mucherino, Antonio; Lavor, Carlile; Liberti, Leo (2011)

On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem. - Liberti, Leo; Masson, Benoît; Lee, Jon; Lavor, Carlile; Mucherino, Antonio (2011)

Branch-and-Prune trees with bounded width. - Liberti, Leo; Masson, Benoît; Lavor, Carlile; Mucherino, Antonio (2011)

Sparsifying Distance Matrices for Protein-Protein Structure Alignments. - Mucherino, Antonio; Wohlers, Inken; Klau, Gunnar W.; Andonov, Rumen (2011)

Extending the definition of beta-consistent biclustering for feature selection. - Mucherino, Antonio (2011)

Recent Developments in Data Mining and Agriculture. - Mucherino, Antonio; Ruß, Georg (2011)

Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics. - Mucherino, Antonio; Fuchs, Martin; Vasseur, Xavier; Gratton, Serge (2011)

Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. - Mucherino, Antonio; Lavor, Carlile; Malliavin, Therese E.; Liberti, Leo; Nilges, Michael; Maculan, Nelson (2011)

Polynomial cases of the Discretizable Molecular Distance Geometry Problem - Liberti, Leo; Lavor, Carlile; Masson, Benoît; Mucherino, Antonio (CoRR, 2011)

A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem. - Mucherino, Antonio; Lavor, Carlile; Liberti, Leo; Talbi, El-Ghazali (2010)

On the solution of molecular distance geometry problems with interval data. - Lavor, Carlile; Liberti, Leo; Mucherino, Antonio (2010)

MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems. - Mucherino, Antonio; Liberti, Leo; Lavor, Carlile (2010)

Consistent Biclustering and Applications to Agriculture. - Mucherino, Antonio; Urtubia, Alejandra (2010)

A New Heuristic for Feature Selection by Consistent Biclustering - Mucherino, Antonio; Cafieri, Sonia (CoRR, 2010)

On the number of solutions of the discretizable molecular distance geometry problem - Liberti, Leo; Masson, Benoît; Lee, Jon; Lavor, Carlile; Mucherino, Antonio (CoRR, 2010)

A survey of data mining techniques applied to agriculture. - Mucherino, Antonio; Papajorgji, Petraq; Pardalos, Panos M. (Oper. Res., 2009)

The Molecular Distance Geometry Problem Applied to Protein Conformations. - Mucherino, Antonio; Lavor, Carlile; Maculan, Nelson (2009)

Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. - Mucherino, Antonio; Liberti, Leo; Lavor, Carlile; Maculan, Nelson (2009)

Computing artificial backbones of hydrogen atoms in order to discover protein backbones. - Lavor, Carlile; Mucherino, Antonio; Liberti, Leo; Maculan, Nelson (2009)

On a discretizable subclass of instances of the molecular distance geometry problem. - Lavor, Carlile; Liberti, Leo; Mucherino, Antonio; Maculan, Nelson (2009)

Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW 2009, Paris, France, June 2-4 2009 (2009)

Understanding the role of the topology in protein folding by computational inverse folding experiments. - Mucherino, Antonio; Costantini, Susan; Serafino, Daniela di; D'Apuzzo, Marco; Facchiano, Angelo M.; Colonna, Giovanni (Comput. Biol. Chem., 2008)