CharProtDB: a database of experimentally characterized protein annotations - Ramana Madupu; Alexander R. Richter; Robert J. Dodson; Lauren M. Brinkac; Derek M. Harkins; A. Scott Durkin; Susmita Shrivastava; Granger G. Sutton; Daniel H. Haft (Nucleic Acids Res., 2012)

The Human Microbiome Project: An Opportunity to Engage Undergraduates in Research - Anne G. Rosenwald; Gaurav S. Arora; Ramana Madupu; Jennifer Roecklein-Canfield; Janet S. Russell (Proceedings of the International Conference on Computational Science, ICCS 2012, Omaha, Nebraska, USA, 4-6 June, 2012, 2012)

Meeting report: a workshop on Best Practices in Genome Annotation - Ramana Madupu; Lauren M. Brinkac; Jennifer L. Harrow; Laurens G. Wilming; Ulrike Böhme; Philippe Lamesch; Linda I. Hannick (Database J. Biol. Databases Curation, 2010)

The comprehensive microbial resource - Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Robert Montgomery; Nikhat Zafar; Qi Yang; Ramana Madupu; Phil Goetz; Kevin Galinsky; Owen White; Granger G. Sutton (Nucleic Acids Res., 2010)

Pathema: a clade-specific bioinformatics resource center for pathogen research - Lauren M. Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J. Dodson; A. Scott Durkin; Derek M. Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; et al. (Nucleic Acids Res., 2010)

Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...) - Robert Denroche; Ramana Madupu; Shibu Yooseph; Granger G. Sutton; Hagit Shatkay (Linking Literature, Information, and Knowledge for Biology - Workshop of the BioLink Special Interest Group, ISMB/ECCB 2009, Stockholm, Sweden, June 28-29, 2009, Revised Selected Papers, 2008)