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2020 – today
- 2025
[i12]Mohamed Harmanani, Amoon Jamzad, Minh Nguyen Nhat To, Paul F. R. Wilson, Zhuoxin Guo, Fahimeh Fooladgar, Samira Sojoudi, Mahdi Gilany, Silvia D. Chang, Peter C. Black, Michael Leveridge, Robert Siemens, Purang Abolmaesumi, Parvin Mousavi:
Cinepro: Robust Training of Foundation Models for Cancer Detection in Prostate Ultrasound Cineloops. CoRR abs/2501.12331 (2025)- [i11]Mohamed Harmanani, Paul F. R. Wilson, Minh Nguyen Nhat To, Mahdi Gilany, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
TRUSWorthy: Toward Clinically Applicable Deep Learning for Confident Detection of Prostate Cancer in Micro-Ultrasound. CoRR abs/2502.14707 (2025) - 2024
- [j58]Paul F. R. Wilson
, Mohamed Harmanani, Minh Nguyen Nhat To, Mahdi Gilany, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Toward confident prostate cancer detection using ultrasound: a multi-center study. Int. J. Comput. Assist. Radiol. Surg. 19(5): 841-849 (2024) - [j57]Minh Nguyen Nhat To, Fahimeh Fooladgar, Paul F. R. Wilson, Mohamed Harmanani, Mahdi Gilany, Samira Sojoudi, Amoon Jamzad, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
LensePro: label noise-tolerant prototype-based network for improving cancer detection in prostate ultrasound with limited annotations. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1121-1128 (2024) - [j56]Laura Connolly, Fahimeh Fooladgar, Amoon Jamzad, Martin Kaufmann, Ayesha Syeda, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
ImSpect: Image-driven self-supervised learning for surgical margin evaluation with mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1129-1136 (2024) - [j55]Chris Yeung, Tamas Ungi, Zoe Hu, Amoon Jamzad, Martin Kaufmann, Ross Walker, Shaila Merchant, Cecil Jay Engel, Doris Jabs, John F. Rudan, Parvin Mousavi, Gabor Fichtinger:
From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1193-1201 (2024) - [c113]Sophia Mannina, Shamel Addas, Purang Abolmaesumi, Parvin Mousavi, Nooshin Maghsoodi, Sarah Nassar, David Maslove, Stephanie Sibley:
Digital Nudges in Healthcare Contexts: An Information Systems Perspective. AMCIS 2024 - [c112]Colton Barr, Leah A. Groves, Tamas Ungi, D. Robert Siemens, Babacar Diao, Ron Kikinis, Parvin Mousavi, Gabor Fichtinger:
Extracting 3D Prostate Geometry from 2D Optically-Tracked Transrectal Ultrasound Images. CCECE 2024: 32-37 - [c111]Jade Warren, Amoon Jamzad, Tamara Jamaspishvili, Rachael Iseman, Ayesha Syeda, Martin Kaufmann, John F. Rudan, Gabor Fichtinger, David M. Berman, Parvin Mousavi:
Towards Improving Surgical Margins in Tumour Resection Using Mass Spectrometry Imaging. CCECE 2024: 554-558 - [c110]Vivian Nguyen, Amoon Jamzad, Paul F. R. Wilson, Mahdi Gilany, Purang Abolmaesumi, Michael Leveridge, Robert Siemens, Parvin Mousavi:
Assessing the Performance of Foundation Models in Prostate Segmentation Across Different Ultrasound Modalities. CCECE 2024: 876-880 - [c109]Fahimeh Fooladgar, Minh Nguyen Nhat To, Parvin Mousavi, Purang Abolmaesumi:
Manifold DivideMix: A Semi-Supervised Contrastive Learning Framework for Severe Label Noise. CVPR Workshops 2024: 4012-4021 - [c108]Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Mahdi Gilany, Mohamed Harmanani, Tarek Elghareb, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
ProstNFound: Integrating Foundation Models with Ultrasound Domain Knowledge and Clinical Context for Robust Prostate Cancer Detection. MICCAI (6) 2024: 499-509 - [c107]Mahdi Gilany, Mohamed Harmanani, Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Calibrated Diverse Ensemble Entropy Minimization for Robust Test-Time Adaptation in Prostate Cancer Detection. MLMI@MICCAI (1) 2024: 361-371 - [i10]Mohamed Harmanani, Paul F. R. Wilson, Fahimeh Fooladgar, Amoon Jamzad, Mahdi Gilany, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Benchmarking Image Transformers for Prostate Cancer Detection from Ultrasound Data. CoRR abs/2403.18233 (2024) - [i9]Mahdi Gilany, Mohamed Harmanani, Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Calibrated Diverse Ensemble Entropy Minimization for Robust Test-Time Adaptation in Prostate Cancer Detection. CoRR abs/2407.12697 (2024) - 2023
- [j54]Mahdi Gilany, Paul F. R. Wilson, Andrea Perera-Ortega, Amoon Jamzad, Minh Nguyen Nhat To, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
TRUSformer: improving prostate cancer detection from micro-ultrasound using attention and self-supervision. Int. J. Comput. Assist. Radiol. Surg. 18(7): 1193-1200 (2023) - [j53]Fahimeh Fooladgar, Minh Nguyen Nhat To, Golara Javadi, Samira Sojoudi, Walid Eshumani, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Semi-supervised learning from coarse histopathology labels. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11(4): 1143-1150 (2023) - [j52]Leah A. Groves, Mohamed Keita, Saidou Talla, Ron Kikinis, Gabor Fichtinger, Parvin Mousavi, Mamadou Camara:
A Review of Low-Cost Ultrasound Compatible Phantoms. IEEE Trans. Biomed. Eng. 70(12): 3436-3448 (2023) - [c106]Amoon Jamzad, Fahimeh Fooladgar, Laura Connolly, Dilakshan Srikanthan, Ayesha Syeda, Martin Kaufmann, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Bridging Ex-Vivo Training and Intra-operative Deployment for Surgical Margin Assessment with Evidential Graph Transformer. MICCAI (7) 2023: 562-571 - [c105]Josh Ehrlich, Chris Yeung, Martin Kaufman, Amoon Jamzad, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Determining the time-delay of a mass spectrometry-based tissue sensor. Image-Guided Procedures 2023 - [c104]Hanad Elmi, Amoon Jamzad, Mackenzie Sharp, Jessica R. Rodgers, Martin Kaufmann, Tamara Jamaspishvili, Rachael Iseman, David Berman, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
ViPRE: an open-source software implementation for end-to-end analysis of mass spectrometry data. Image-Guided Procedures 2023 - [c103]Nicole Kitner, Jessica R. Rodgers, Tamas Ungi, Martin Korzeniowski, Timothy Olding, Parvin Mousavi, Gabor Fichtinger:
Multi-catheter modelling in reconstructed 3D transrectal ultrasound images from prostate brachytherapy. Image-Guided Procedures 2023 - [c102]Lucas March, Jessica R. Rodgers, Rebecca Hisey, Amoon Jamzad, Alice M. L. Santilli, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Cautery tool state detection using deep learning on intraoperative surgery videos. Image-Guided Procedures 2023 - [c101]David Morton, Laura Connolly, Leah A. Groves, Kyle Sunderland, Amoon Jamzad, John F. Rudan, Gabor Fichtinger, Tamas Ungi, Parvin Mousavi:
Tracked tissue sensing for tumor bed inspection. Image-Guided Procedures 2023 - [c100]Olivia Radcliffe, Laura Connolly, Tamas Ungi, Caitlin T. Yeo, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Navigated surgical resection cavity inspection for breast conserving surgery. Image-Guided Procedures 2023 - [c99]Dilakshan Srikanthan, Martin Kaufmann, Amoon Jamzad, Ayesha Syeda, Alice M. L. Santilli, Alireza Sedghi, Gabor Fichtinger, Jamie Purzner, John F. Rudan, Teresa Purzner, Parvin Mousavi:
Attention-based multi-instance learning for improved glioblastoma detection using mass spectrometry. Image-Guided Procedures 2023 - [c98]Ayesha Syeda, Fahimeh Fooladgar, Amoon Jamzad, Dilakshan Srikanthan, Martin Kaufmann, Kevin Yi Mi Ren, Cecil Jay Engel, Ross Walker, Shaila Merchant, Doug McKay, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-supervised learning and uncertainty estimation for surgical margin detection. Image-Guided Procedures 2023 - [c97]Chris Yeung, Joshua Ehrlich, Amoon Jamzad, Martin Kaufmann, John F. Rudan, Cecil Jay Engel, Parvin Mousavi, Tamas Ungi, Gabor Fichtinger:
Cautery trajectory analysis for evaluation of resection margins in breast-conserving surgery. Image-Guided Procedures 2023 - [e10]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part I. Lecture Notes in Computer Science 14220, Springer 2023, ISBN 978-3-031-43906-3 [contents] - [e9]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part II. Lecture Notes in Computer Science 14221, Springer 2023, ISBN 978-3-031-43894-3 [contents] - [e8]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part III. Lecture Notes in Computer Science 14222, Springer 2023, ISBN 978-3-031-43897-4 [contents] - [e7]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part IV. Lecture Notes in Computer Science 14223, Springer 2023, ISBN 978-3-031-43900-1 [contents] - [e6]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part V. Lecture Notes in Computer Science 14224, Springer 2023, ISBN 978-3-031-43903-2 [contents] - [e5]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part VI. Lecture Notes in Computer Science 14225, Springer 2023, ISBN 978-3-031-43986-5 [contents] - [e4]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part VII. Lecture Notes in Computer Science 14226, Springer 2023, ISBN 978-3-031-43989-6 [contents] - [e3]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part VIII. Lecture Notes in Computer Science 14227, Springer 2023, ISBN 978-3-031-43992-6 [contents] - [e2]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part IX. Lecture Notes in Computer Science 14228, Springer 2023, ISBN 978-3-031-43995-7 [contents] - [e1]Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu E. Salcudean, James Duncan, Tanveer F. Syeda-Mahmood, Russell H. Taylor:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part X. Lecture Notes in Computer Science 14229, Springer 2023, ISBN 978-3-031-43998-8 [contents] - [i8]Mahdi Gilany, Paul F. R. Wilson, Andrea Perera-Ortega, Amoon Jamzad, Minh Nguyen Nhat To, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
TRUSformer: Improving Prostate Cancer Detection from Micro-Ultrasound Using Attention and Self-Supervision. CoRR abs/2303.02128 (2023) - [i7]Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi:
Domain Transfer Through Image-to-Image Translation for Uncertainty-Aware Prostate Cancer Classification. CoRR abs/2307.00479 (2023) - [i6]Fahimeh Fooladgar, Minh Nguyen Nhat To, Parvin Mousavi, Purang Abolmaesumi:
Manifold DivideMix: A Semi-Supervised Contrastive Learning Framework for Severe Label Noise. CoRR abs/2308.06861 (2023) - 2022
- [j51]Emily Kaczmarek, Jina Nanayakkara, Alireza Sedghi, Mehran Pesteie, Thomas Tuschl, Neil Renwick, Parvin Mousavi:
Topology preserving stratification of tissue neoplasticity using Deep Neural Maps and microRNA signatures. BMC Bioinform. 23(1): 38 (2022) - [j50]Golara Javadi, Sharareh Bayat, Mohammad Mahdi Kazemi Esfeh, Samareh Samadi, Alireza Sedghi, Samira Sojoudi, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Towards targeted ultrasound-guided prostate biopsy by incorporating model and label uncertainty in cancer detection. Int. J. Comput. Assist. Radiol. Surg. 17(1): 121-128 (2022) - [j49]Minh Nguyen Nhat To, Fahimeh Fooladgar, Golara Javadi, Sharareh Bayat, Samira Sojoudi, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Coarse label refinement for improving prostate cancer detection in ultrasound imaging. Int. J. Comput. Assist. Radiol. Surg. 17(5): 841-847 (2022) - [j48]Zoe Hu, Paola V. Nasute Fauerbach, Chris Yeung, Tamas Ungi, John F. Rudan, Cecil Jay Engel, Parvin Mousavi, Gabor Fichtinger, Doris Jabs:
Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation. Int. J. Comput. Assist. Radiol. Surg. 17(9): 1663-1672 (2022) - [j47]Golara Javadi, Samareh Samadi, Sharareh Bayat, Samira Sojoudi, Antonio Hurtado, Walid Eshumani, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Training deep neural networks with noisy clinical labels: toward accurate detection of prostate cancer in US data. Int. J. Comput. Assist. Radiol. Surg. 17(9): 1697-1705 (2022) - [j46]Fahimeh Fooladgar, Amoon Jamzad, Laura Connolly, Alice M. L. Santilli, Martin Kaufmann, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
Uncertainty estimation for margin detection in cancer surgery using mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 17(12): 2305-2313 (2022) - [j45]Faranak Akbarifar, Sean P. Dukelow, Parvin Mousavi, Stephen H. Scott:
Computer-aided identification of stroke-associated motor impairments using a virtual reality augmented robotic system. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(3): 252-259 (2022) - [j44]Kasra Nezamabadi, Jacob Mayfield, Pengyuan Li, Gabriela V. Greenland, Sebastian Rodriguez, Bahadir Simsek, Parvin Mousavi, Hagit Shatkay, M. Roselle Abraham:
Toward ECG-based analysis of hypertrophic cardiomyopathy: a novel ECG segmentation method for handling abnormalities. J. Am. Medical Informatics Assoc. 29(11): 1879-1889 (2022) - [j43]Laura Connolly, Anton Deguet, Simon Léonard, Junichi Tokuda, Tamas Ungi, Axel Krieger, Peter Kazanzides, Parvin Mousavi, Gabor Fichtinger, Russell H. Taylor:
Bridging 3D Slicer and ROS2 for Image-Guided Robotic Interventions. Sensors 22(14): 5336 (2022) - [j42]Joshua Ehrlich, Amoon Jamzad, Mark Asselin, Jessica Robin Rodgers, Martin Kaufmann, Tamás Haidegger, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Sensor-Based Automated Detection of Electrosurgical Cautery States. Sensors 22(15): 5808 (2022) - [j41]Alice Maria Leondina Santilli, Kevin Yi Mi Ren, Richard Oleschuk, Martin Kaufmann, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Application of Intraoperative Mass Spectrometry and Data Analytics for Oncological Margin Detection, A Review. IEEE Trans. Biomed. Eng. 69(7): 2220-2232 (2022) - [c96]Sindhura Thirumal, Amoon Jamzad, Tiziana Cotechini, D. Robert Siemens, Parvin Mousavi:
Automated Cell Phenotyping for Imaging Mass Cytometry. EMBC 2022: 426-429 - [c95]Fahimeh Fooladgar, Minh Nguyen Nhat To, Golara Javadi, Samareh Samadi, Sharareh Bayat, Samira Sojoudi, Walid Eshumani, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Uncertainty-Aware Deep Ensemble Model For Targeted Ultrasound-Guided Prostate Biopsy. ISBI 2022: 1-5 - [c94]Mahdi Gilany, Paul F. R. Wilson, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Towards Confident Detection of Prostate Cancer Using High Resolution Micro-ultrasound. MICCAI (4) 2022: 411-420 - [c93]Laura Connolly, Amoon Jamzad, Arash Nikniazi, Rana Poushimin, Jean-Michel Nunzi, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Feasibility of combined optical and acoustic imaging for surgical cavity scanning. Image-Guided Procedures 2022 - [c92]Lucas March, Jessica Robin Rodgers, Amoon Jamzad, Alice M. L. Santilli, Rebecca Hisey, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Phase recognition and cautery localization in basal cell carcinoma surgical videos. Image-Guided Procedures 2022 - [c91]Dhruv Patel, Erik Ziegler, Rob Lewis, Parvin Mousavi, Alireza Sedghi:
Deep image clustering for standardization of radiological workflows. Image-Guided Procedures 2022 - [i5]Mahdi Gilany, Paul F. R. Wilson, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound. CoRR abs/2207.10485 (2022) - [i4]Paul F. R. Wilson, Mahdi Gilany, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Self-Supervised Learning with Limited Labeled Data for Prostate Cancer Detection in High Frequency Ultrasound. CoRR abs/2211.00527 (2022) - 2021
- [j40]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Natasja N. Y. Janssen, Shaila Merchant, Cecil Jay Engel, Doug McKay, Sonal Varma, Ami Wang, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Domain adaptation and self-supervised learning for surgical margin detection. Int. J. Comput. Assist. Radiol. Surg. 16(5): 861-869 (2021) - [j39]Gabor Fichtinger, Parvin Mousavi, Tamas Ungi, Aaron Fenster, Purang Abolmaesumi, Gernot Kronreif, Juan Ruiz-Alzola, Alain Ndoye, Babacar Diao, Ron Kikinis:
Design of an Ultrasound-Navigated Prostate Cancer Biopsy System for Nationwide Implementation in Senegal. J. Imaging 7(8): 154 (2021) - [j38]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Catriona E. Farquharson, Kevin Yi Mi Ren, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Combined Mass Spectrometry and Histopathology Imaging for Perioperative Tissue Assessment in Cancer Surgery. J. Imaging 7(10): 203 (2021) - [j37]Alireza Sedghi, Lauren J. O'Donnell, Tina Kapur, Erik G. Learned-Miller, Parvin Mousavi, William M. Wells III:
Image registration: Maximum likelihood, minimum entropy and deep learning. Medical Image Anal. 69: 101939 (2021) - [c90]Sindhura Thirumal, Amoon Jamzad, Tiziana Cotechini, Charles T. Hindmarch, Céline Hardy, Nathalia Kim, Amber Simpson, Charles H. Graham, David M. Berman, D. Robert Siemens, Parvin Mousavi:
Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study. BHI 2021: 1-4 - [c89]Mahsa Aghaeeaval, Nathaniel Bendahan, Zaitoon Shivji, Carter McInnis, Amoon Jamzad, Lysa Boisse Lomax, Garima Shukla, Parvin Mousavi, Gavin P. Winston:
Prediction of patient survival following postanoxic coma using EEG data and clinical features. EMBC 2021: 997-1000 - [c88]Golara Javadi, Samareh Samadi, Sharareh Bayat, Samira Sojoudi, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Characterizing The Uncertainty Of Label Noise In Systematic Ultrasound-Guided Prostate Biopsy. ISBI 2021: 424-428 - [c87]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Shaila Merchant, Cecil Jay Engel, Kathryn Logan, Julie Wallis, Natasja N. Y. Janssen, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data. ISBI 2021: 980-984 - [c86]Andrew Grebenisan, Alireza Sedghi, Jason Izard, Robert Siemens, Alexandre Menard, Parvin Mousavi:
Spatial Decomposition For Robust Domain Adaptation In Prostate Cancer Detection. ISBI 2021: 1218-1222 - [c85]Amoon Jamzad, Alice M. L. Santilli, Faranak Akbarifar, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Graph Transformers for Characterization and Interpretation of Surgical Margins. MICCAI (7) 2021: 88-97 - [c84]Golara Javadi, Samareh Samadi, Sharareh Bayat, Samira Sojoudi, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Training Deep Networks for Prostate Cancer Diagnosis Using Coarse Histopathological Labels. MICCAI (8) 2021: 680-689 - [c83]Faranak Akbarifar, Amoon Jamzad, Alice M. L. Santilli, M. Kauffman, Natasja N. Y. Janssen, Laura Connolly, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery. Image-Guided Procedures 2021 - [c82]Andrea Perera-Ortega, Alireza Sedghi, Jonah Isen, Sjoerd B. Vos, Parvin Mousavi, Gavin P. Winston:
Machine learning to detect brain lesions in focal epilepsy. Image-Guided Procedures 2021 - [c81]Julia Wiercigroch, Tamas Ungi, Ahmedou Moulaye Idriss, Yahya Tfeil, Ron Kikinis, Parvin Mousavi, Gabor Fichtinger:
Ultrasound-guided needle placement system optimized for translation to Mauritania. Image-Guided Procedures 2021 - [c80]Catherine O. Wu, Babacar Diao, Tamas Ungi, Alireza Sedghi, Ron Kikinis, Parvin Mousavi, Gabor Fichtinger:
Development of an open-source system for prostate biopsy training in Senegal. Image-Guided Procedures 2021 - [c79]Brian Chen, Golara Javadi, Amoon Jamzad, Alexander Hamilton, Stephanie Sibley, Purang Abolmaesumi, David Maslove, Parvin Mousavi:
Detecting Atrial Fibrillation in ICU Telemetry data with Weak Labels. MLHC 2021: 176-195 - 2020
- [j36]Brandon Chan, John F. Rudan, Parvin Mousavi, Manuela Kunz:
Intraoperative integration of structured light scanning for automatic tissue classification: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(4): 641-649 (2020) - [j35]Alice M. L. Santilli, Amoon Jamzad, Natasja N. Y. Janssen, Martin Kaufmann, Laura Connolly, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Perioperative margin detection in basal cell carcinoma using a deep learning framework: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(5): 887-896 (2020) - [j34]Golara Javadi, Samareh Samadi, Sharareh Bayat, Mehran Pesteie, Mohammad H. Jafari, Samira Sojoudi, Claudia Kesch, Antonio Hurtado, Silvia D. Chang, Parvin Mousavi, Peter C. Black, Purang Abolmaesumi:
Multiple instance learning combined with label invariant synthetic data for guiding systematic prostate biopsy: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(6): 1023-1031 (2020) - [j33]Alireza Sedghi, Alireza Mehrtash, Amoon Jamzad, Amel Amalou, William M. Wells III, Tina Kapur, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Sheng Xu, Purang Abolmaesumi, Parvin Mousavi:
Improving detection of prostate cancer foci via information fusion of MRI and temporal enhanced ultrasound. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1215-1223 (2020) - [j32]Natasja N. Y. Janssen, Martin Kaufmann, Alice M. L. Santilli, Amoon Jamzad, Kaitlin Vanderbeck, Kevin Yi Mi Ren, Tamas Ungi, Parvin Mousavi, John F. Rudan, Doug McKay, Ami Wang, Gabor Fichtinger:
Navigated tissue characterization during skin cancer surgery. Int. J. Comput. Assist. Radiol. Surg. 15(10): 1665-1672 (2020) - [j31]Christian Herz, Kemal Tuncali, Andriy Fedorov, Kyle MacNeil, Peter A. Behringer, Junichi Tokuda, Alireza Mehrtash, Parvin Mousavi, Ron Kikinis, Fiona M. Fennessy, Clare M. Tempany:
Open Source Platform for Transperineal In-Bore MRI-Guided Targeted Prostate Biopsy. IEEE Trans. Biomed. Eng. 67(2): 565-576 (2020) - [c78]Justin Gerolami, Amoon Jamzad, Sijia Li, Sharareh Bayat, Purang Abolmaesumi, Parvin Mousavi:
Soft Tissue Characterization with Temporal Enhanced Ultrasound through Periodic Manipulation of Point Spread Function: A Feasibility Study. EMBC 2020: 78-81 - [c77]Justin Gerolami, Victoria Wu, Paolo Nasute Fauerbach, Doris Jabs, Cecil Jay Engel, John F. Rudan, Shaila Merchant, Ross Walker, Emran Mohammad Abu Anas, Purang Abolmaesumi, Gabor Fichtinger, Tamas Ungi, Parvin Mousavi:
An End-to-End Solution for Automatic Contouring of Tumor Region in Intraoperative Images of Breast Lumpectomy. EMBC 2020: 2003-2006 - [c76]Amoon Jamzad, Alireza Sedghi, Alice M. L. Santilli, Natasja N. Y. Janssen, Martin Kaufmann, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Improved Resection Margins in Surgical Oncology Using Intraoperative Mass Spectrometry. MICCAI (3) 2020: 44-53 - [c75]Golara Javadi, Minh Nguyen Nhat To, Samareh Samadi, Sharareh Bayat, Samira Sojoudi, Antonio Hurtado, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
Complex Cancer Detector: Complex Neural Networks on Non-stationary Time Series for Guiding Systematic Prostate Biopsy. MICCAI (3) 2020: 524-533 - [c74]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Rachel Rubino, Alireza Sedghi, Tamas Ungi, Mark Asselin, Scott Yam, John F. Rudan, Christopher Nicol, Gabor Fichtinger, Parvin Mousavi:
Classification of tumor signatures from electrosurgical vapors using mass spectrometry and machine learning: a feasibility study. Image-Guided Procedures 2020: 113150Q - [c73]Andrew Grebenisan, Alireza Sedghi, Alexandre Menard, Jason Izard, Robert Siemens, Parvin Mousavi:
Towards democratizing AI in MR-based prostate cancer diagnosis: 3.0 to 1.5 Tesla. Image-Guided Procedures 2020: 113150R - [c72]Alireza Sedghi, Gregory Salomons, Jean-David Jutras, Jim Gooding, L. John Schreiner, William M. Wells III, Parvin Mousavi:
Image registration with deep probabilistic classifiers: application in radiation therapy. Image-Guided Procedures 2020: 1131509 - [c71]Lauren Yates, Laura Connolly, Amoon Jamzad, Mark Asselin, Rachel Rubino, Scott Yam, Tamas Ungi, Andras Lasso, Christopher Nicol, Parvin Mousavi, Gabor Fichtinger:
Robotic tissue scanning with biophotonic probe. Image-Guided Procedures 2020: 1131519
2010 – 2019
- 2019
- [j30]Alireza Sedghi, Mehran Pesteie, Golara Javadi, Shekoofeh Azizi, Pingkun Yan, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Robert Rohling, Purang Abolmaesumi, Parvin Mousavi:
Deep neural maps for unsupervised visualization of high-grade cancer in prostate biopsies. Int. J. Comput. Assist. Radiol. Surg. 14(6): 1009-1016 (2019) - [c70]Mohammed Gasmallah, Farhana H. Zulkernine, François Rivest, Parvin Mousavi, Alireza Sedghi:
Fully End-To-End Super-Resolved Bone Age Estimation. Canadian AI 2019: 498-504 - [c69]Brandon Chan, Alireza Sedghi, Philip Laird, David Maslove, Parvin Mousavi:
Prediction of Patient-specific Acute Hypotensive Episodes in ICU Using Deep Models. EMBC 2019: 566-569 - [c68]Brandon Chan, Alireza Sedghi, Philip Laird, David Maslove, Parvin Mousavi:
Predictive Modeling using Intensive Care Unit Data: Considerations for Data Pre-processing and Analysis. EMBC 2019: 3429-3432 - [c67]Alireza Sedghi, Tina Kapur, Jie Luo, Parvin Mousavi, William M. Wells III:
Probabilistic Image Registration via Deep Multi-class Classification: Characterizing Uncertainty. UNSURE/CLIP@MICCAI 2019: 12-22 - [c66]Sijia Li, Jack A. Barnes, Purang Abolmaesumi, Hans-Peter Loock, Parvin Mousavi:
Temporal enhanced ultrasound and shear wave elastography for tissue classification in cancer interventions: an experimental evaluation. Image-Guided Procedures 2019: 109510V - [c65]Alireza Sedghi, Soheil Hamidi, Alireza Mehrtash, Erik Ziegler, Clare M. Tempany, Steve Pieper, Tina Kapur, Parvin Mousavi:
Tesseract-medical imaging: open-source browser-based platform for artificial intelligence deployment in medical imaging. Image-Guided Procedures 2019: 109511R - [c64]Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Semi-supervised image registration using deep learning. Image-Guided Procedures 2019: 109511G - [c63]Laura Connolly, Tamas Ungi, Andras Lasso, Thomas Vaughan, Mark Asselin, Parvin Mousavi, Scott Yam, Gabor Fichtinger:
Mechanically controlled spectroscopic imaging for tissue classification. Image-Guided Procedures 2019: 109512E - [c62]Zachary Baum, Ben Church, Andras Lasso, Tamas Ungi, Christopher Schlenger, Daniel P. Borschneck, Parvin Mousavi, Gabor Fichtinger:
Step-wise identification of ultrasound-visible anatomical landmarks for 3D visualization of scoliotic spine. Image-Guided Procedures 2019: 1095129 - [c61]Brandon Chan, Jason Auyeung, John F. Rudan, Parvin Mousavi, Manuela Kunz:
Tissue classification using machine learning to aid in intraoperative registration: a pilot study. Image-Guided Procedures 2019: 1095136 - [c60]Blake Pyman, Alireza Sedghi, Shekoofeh Azizi, Kathrin Tyryshkin, Neil Renwick, Parvin Mousavi:
Exploring microRNA Regulation of Cancer with Context-Aware Deep Cancer Classifier. PSB 2019: 160-171 - [i3]Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Deep Information Theoretic Registration. CoRR abs/1901.00040 (2019) - 2018
- [j29]Shekoofeh Azizi, Nathan Van Woudenberg, Samira Sojoudi, Ming Li, Sheng Xu, Emran Mohammad Abu Anas, Pingkun Yan, Amir M. Tahmasebi, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi:
Toward a real-time system for temporal enhanced ultrasound-guided prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 13(8): 1201-1209 (2018) - [j28]Emran Mohammad Abu Anas, Parvin Mousavi, Purang Abolmaesumi:
A deep learning approach for real time prostate segmentation in freehand ultrasound guided biopsy. Medical Image Anal. 48: 107-116 (2018) - [j27]Jack A. Barnes, Sijia Li, Apoorv Goyal, Purang Abolmaesumi, Parvin Mousavi, Hans-Peter Loock:
Broadband Vibration Detection in Tissue Phantoms Using a Fiber Fabry-Perot Cavity. IEEE Trans. Biomed. Eng. 65(4): 921-927 (2018) - [j26]Layan Nahlawi, Caroline Goncalves, Farhad Imani, Mena Gaed, Jose A. Gomez, Madeleine Moussa, Eli Gibson, Aaron Fenster, Aaron D. Ward, Purang Abolmaesumi, Hagit Shatkay, Parvin Mousavi:
Stochastic Modeling of Temporal Enhanced Ultrasound: Impact of Temporal Properties on Prostate Cancer Characterization. IEEE Trans. Biomed. Eng. 65(8): 1798-1809 (2018) - [j25]Shekoofeh Azizi, Sharareh Bayat, Pingkun Yan, Amir Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi:
Deep Recurrent Neural Networks for Prostate Cancer Detection: Analysis of Temporal Enhanced Ultrasound. IEEE Trans. Medical Imaging 37(12): 2695-2703 (2018) - [c59]Shekoofeh Azizi, Pingkun Yan, Amir M. Tahmasebi, Peter A. Pinto, Bradford J. Wood, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Parvin Mousavi, Purang Abolmaesumi:
Learning from Noisy Label Statistics: Detecting High Grade Prostate Cancer in Ultrasound Guided Biopsy. MICCAI (4) 2018: 21-29 - [c58]Shekoofeh Azizi, Sharareh Bayat, Ajay Rajaram, Emran Mohammad Abu Anas, Tamer Mohamed, Konrad Walus, Purang Abolmaesumi, Parvin Mousavi:
3D tissue mimicking biophantoms for ultrasound imaging: bioprinting and image analysis. Image-Guided Procedures 2018: 105761T - [i2]Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III:
Semi-Supervised Deep Metrics for Image Registration. CoRR abs/1804.01565 (2018) - 2017
- [j24]Delaram Behnami, Alireza Sedghi, Emran Mohammad Abu Anas, Abtin Rasoulian, Alexander Seitel, Victoria A. Lessoway, Tamas Ungi, David Yen, Jill Osborn, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi:
Model-based registration of preprocedure MR and intraprocedure US of the lumbar spine. Int. J. Comput. Assist. Radiol. Surg. 12(6): 973-982 (2017) - [j23]Shekoofeh Azizi, Parvin Mousavi, Pingkun Yan, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Purang Abolmaesumi:
Transfer learning from RF to B-mode temporal enhanced ultrasound features for prostate cancer detection. Int. J. Comput. Assist. Radiol. Surg. 12(7): 1111-1121 (2017) - [j22]Shekoofeh Azizi, Sharareh Bayat, Pingkun Yan, Amir M. Tahmasebi, Guy Nir, Jin Tae Kwak, Sheng Xu, Storey Wilson, Kenneth A. Iczkowski, M. Scott Lucia, Larry Goldenberg, Septimiu E. Salcudean, Peter A. Pinto, Bradford J. Wood, Purang Abolmaesumi, Parvin Mousavi:
Detection and grading of prostate cancer using temporal enhanced ultrasound: combining deep neural networks and tissue mimicking simulations. Int. J. Comput. Assist. Radiol. Surg. 12(8): 1293-1305 (2017) - [c57]Alireza Mehrtash, Alireza Sedghi, Mohsen Ghafoorian, Mehdi Taghipour, Clare M. Tempany, William M. Wells III, Tina Kapur, Parvin Mousavi, Purang Abolmaesumi, Andriy Fedorov:
Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks. Computer-Aided Diagnosis 2017: 101342A - [c56]Emran Mohammad Abu Anas, Saman Nouranian, Seyedeh Sara Mahdavi, Ingrid Spadinger, William J. Morris, Septimiu E. Salcudean, Parvin Mousavi, Purang Abolmaesumi:
Clinical Target-Volume Delineation in Prostate Brachytherapy Using Residual Neural Networks. MICCAI (3) 2017: 365-373 - [c55]Ben Church, Andras Lasso, Christopher Schlenger, Daniel P. Borschneck, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Visualization of scoliotic spine using ultrasound-accessible skeletal landmarks. Image-Guided Procedures 2017: 101350L - [c54]Layan Nahlawi, Caroline Goncalves, Farhad Imani, Mena Gaed, Jose A. Gomez, Madeleine Moussa, Eli Gibson, Aaron Fenster, Aaron D. Ward, Purang Abolmaesumi, Parvin Mousavi, Hagit Shatkay:
Models of temporal enhanced ultrasound data for prostate cancer diagnosis: the impact of time-series order. Image-Guided Procedures 2017: 101351D - 2016
- [j21]Shekoofeh Azizi, Farhad Imani, Sahar Ghavidel, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi:
Detection of prostate cancer using temporal sequences of ultrasound data: a large clinical feasibility study. Int. J. Comput. Assist. Radiol. Surg. 11(6): 947-956 (2016) - [j20]Emran Mohammad Abu Anas, Alexander Seitel, Abtin Rasoulian, Paul St. John, Tamas Ungi, Andras Lasso, Kathryn Darras, David R. Wilson, Victoria A. Lessoway, Gabor Fichtinger, Michelle Zec, David R. Pichora, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi:
Registration of a statistical model to intraoperative ultrasound for scaphoid screw fixation. Int. J. Comput. Assist. Radiol. Surg. 11(6): 957-965 (2016) - [j19]Emran Mohammad Abu Anas, Abtin Rasoulian, Alexander Seitel, Kathryn Darras, David R. Wilson, Paul St. John, David R. Pichora, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi:
Automatic Segmentation of Wrist Bones in CT Using a Statistical Wrist Shape + Pose Model. IEEE Trans. Medical Imaging 35(8): 1789-1801 (2016) - [c53]Farhad Imani, Sahar Ghavidel, Purang Abolmaesumi, Siavash Khallaghi, Eli Gibson, Amir Khojaste, Mena Gaed, Madeleine Moussa, Jose A. Gomez, Cesare Romagnoli, Derek W. Cool, Matthew Bastian-Jordan, Zahra Kassam, D. Robert Siemens, Michael Leveridge, Silvia D. Chang, Aaron Fenster, Aaron D. Ward, Parvin Mousavi:
Fusion of multi-parametric MRI and temporal ultrasound for characterization of prostate cancer: in vivo feasibility study. Computer-Aided Diagnosis 2016: 97851K - [c52]Emran Mohammad Abu Anas, Alexander Seitel, Abtin Rasoulian, Paul St. John, Tamas Ungi, Andras Lasso, Kathryn Darras, David R. Wilson, Victoria A. Lessoway, Gabor Fichtinger, Michelle Zec, David R. Pichora, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi:
Bone Enhancement in Ultrasound Based on 3D Local Spectrum Variation for Percutaneous Scaphoid Fracture Fixation. MICCAI (1) 2016: 465-473 - [c51]Layan Nahlawi, Farhad Imani, Mena Gaed, Jose A. Gomez, Madeleine Moussa, Eli Gibson, Aaron Fenster, Aaron D. Ward, Purang Abolmaesumi, Hagit Shatkay, Parvin Mousavi:
Prostate Cancer: Improved Tissue Characterization by Temporal Modeling of Radio-Frequency Ultrasound Echo Data. MICCAI (1) 2016: 644-652 - [c50]Shekoofeh Azizi, Farhad Imani, Jin Tae Kwak, Amir M. Tahmasebi, Sheng Xu, Pingkun Yan, Jochen Kruecker, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Parvin Mousavi, Purang Abolmaesumi:
Classifying Cancer Grades Using Temporal Ultrasound for Transrectal Prostate Biopsy. MICCAI (1) 2016: 653-661 - [c49]Sahar Ghavidel, Farhad Imani, Siavash Khallaghi, Eli Gibson, Amir Khojaste, Mena Gaed, Madeleine Moussa, Jose A. Gomez, D. Robert Siemens, Michael Leveridge, Silvia D. Chang, Aaron Fenster, Aaron D. Ward, Purang Abolmaesumi, Parvin Mousavi:
Classification of prostate cancer grade using temporal ultrasound: in vivo feasibility study. Image-Guided Procedures 2016: 97860K - 2015
- [j18]Lili Wang, Takuya Matsushita, Lohith Madireddy, Parvin Mousavi, Sergio Baranzini:
PINBPA: Cytoscape app for network analysis of GWAS data. Bioinform. 31(2): 262-264 (2015) - [j17]Farhad Imani, Bo Zhuang, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Harsh K. Agarwal, Shyam Bharat, Nishant Uniyal, Ismail Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Mehdi Moradi, Parvin Mousavi, Purang Abolmaesumi:
Augmenting MRI-transrectal ultrasound-guided prostate biopsy with temporal ultrasound data: a clinical feasibility study. Int. J. Comput. Assist. Radiol. Surg. 10(6): 727-735 (2015) - [j16]Emran Mohammad Abu Anas, Alexander Seitel, Abtin Rasoulian, Paul St. John, David R. Pichora, Kathryn Darras, David R. Wilson, Victoria A. Lessoway, Ilker Hacihaliloglu, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi:
Bone enhancement in ultrasound using local spectrum variations for guiding percutaneous scaphoid fracture fixation procedures. Int. J. Comput. Assist. Radiol. Surg. 10(6): 959-969 (2015) - [j15]Simrin Nagpal, Purang Abolmaesumi, Abtin Rasoulian, Ilker Hacihaliloglu, Tamas Ungi, Jill Osborn, Victoria A. Lessoway, John F. Rudan, Melanie Jaeger, Robert N. Rohling, Dan P. Borschneck, Parvin Mousavi:
A multi-vertebrae CT to US registration of the lumbar spine in clinical data. Int. J. Comput. Assist. Radiol. Surg. 10(9): 1371-1381 (2015) - [j14]Farhad Imani, Mahdi Ramezani, Saman Nouranian, Eli Gibson, Amir Khojaste, Mena Gaed, Madeleine Moussa, Jose A. Gomez, Cesare Romagnoli, Michael Leveridge, Silvia D. Chang, Aaron Fenster, Robert Siemens, Aaron D. Ward, Parvin Mousavi, Purang Abolmaesumi:
Ultrasound-Based Characterization of Prostate Cancer Using Joint Independent Component Analysis. IEEE Trans. Biomed. Eng. 62(7): 1796-1804 (2015) - [j13]Farhad Imani, Purang Abolmaesumi, Eli Gibson, Amir Khojaste, Mena Gaed, Madeleine Moussa, Jose A. Gomez, Cesare Romagnoli, Michael Leveridge, Silvia D. Chang, Robert Siemens, Aaron Fenster, Aaron D. Ward, Parvin Mousavi:
Computer-Aided Prostate Cancer Detection Using Ultrasound RF Time Series: In Vivo Feasibility Study. IEEE Trans. Medical Imaging 34(11): 2248-2257 (2015) - [j12]Siavash Khallaghi, C. Antonio Sánchez, Abtin Rasoulian, Yue Sun, Farhad Imani, Amir Khojaste, Orcun Goksel, Cesare Romagnoli, Hamidreza Abdi, Silvia D. Chang, Parvin Mousavi, Aaron Fenster, Aaron D. Ward, Sidney S. Fels, Purang Abolmaesumi:
Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. IEEE Trans. Medical Imaging 34(11): 2404-2414 (2015) - [c48]Layan Nahlawi, Farhad Imani, Mena Gaed, Jose A. Gomez, Madeleine Moussa, Eli Gibson, Aaron Fenster, Aaron D. Ward, Purang Abolmaesumi, Parvin Mousavi, Hagit Shatkay:
Using Hidden Markov Models to capture temporal aspects of ultrasound data in prostate cancer. BIBM 2015: 446-449 - [c47]Amir Khojaste, Farhad Imani, Mehdi Moradi, David M. Berman, D. Robert Siemens, Eric E. Sauerberi, Alexander H. Boag, Purang Abolmaesumi, Parvin Mousavi:
Characterization of aggressive prostate cancer using ultrasound RF time series. Computer-Aided Diagnosis 2015: 94141A - [c46]Shekoofeh Azizi, Farhad Imani, Bo Zhuang, Amir M. Tahmasebi, Jin Tae Kwak, Sheng Xu, Nishant Uniyal, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Mehdi Moradi, Parvin Mousavi, Purang Abolmaesumi:
Ultrasound-Based Detection of Prostate Cancer Using Automatic Feature Selection with Deep Belief Networks. MICCAI (2) 2015: 70-77 - [c45]Emran Mohammad Abu Anas, Abtin Rasoulian, Paul St. John, David R. Pichora, Parvin Mousavi, Victoria A. Lessoway, Alexander Seitel, Ilker Hacihaliloglu, Robert Rohling, Purang Abolmaesumi:
Scaphoid fracture fixation: localization of bones through statistical model to ultrasound registration. Image-Guided Procedures 2015: 94150P - [c44]Lili Wang, Parvin Mousavi, Sergio Baranzini:
iPINBPA: An Integrative Network-Based Functional Module Discovery Tool for Genome-Wide Association Studies. Pacific Symposium on Biocomputing 2015: 255-266 - [i1]Lili Wang, Daniel S. Himmelstein, Adam Santaniello, Parvin Mousavi, Sergio E. Baranzini:
iCTNet2: integrating heterogeneous biological interactions to understand complex traits. F1000Research 4: 485 (2015) - 2014
- [j11]Andrew W. L. Dickinson, Purang Abolmaesumi, David G. Gobbi, Parvin Mousavi:
SimITK: Visual Programming of the ITK Image-Processing Library within Simulink. J. Digit. Imaging 27(2): 220-230 (2014) - [c43]Sayyed Mostafa Mostafavi, Sean P. Dukelow, Stephen H. Scott, Parvin Mousavi:
Hierarchical task ordering for time reduction on KINARM assessment protocol. EMBC 2014: 2517-2520 - [c42]Sayyed Mostafa Mostafavi, Sean P. Dukelow, Janice I. Glasgow, Stephen H. Scott, Parvin Mousavi:
Reduction of stroke assessment time for visually guided reaching task on KINARM exoskeleton robot. EMBC 2014: 5296-5299 - [c41]Simrin Nagpal, Purang Abolmaesumi, Abtin Rasoulian, Tamas Ungi, Ilker Hacihaliloglu, Jill Osborn, Dan P. Borschneck, Victoria A. Lessoway, Robert Rohling, Parvin Mousavi:
CT to US Registration of the Lumbar Spine: A Clinical Feasibility Study. IPCAI 2014: 108-117 - [c40]Nishant Uniyal, Farhad Imani, Amir M. Tahmasebi, Harsh K. Agarwal, Shyam Bharat, Pingkun Yan, Jochen Kruecker, Jin Tae Kwak, Sheng Xu, Bradford J. Wood, Peter A. Pinto, Baris Turkbey, Peter L. Choyke, Purang Abolmaesumi, Parvin Mousavi, Mehdi Moradi:
Ultrasound-Based Predication of Prostate Cancer in MRI-guided Biopsy. CLIP@MICCAI 2014: 142-150 - [c39]Simrin Nagpal, Ilker Hacihaliloglu, Tamas Ungi, Abtin Rasoulian, Jill Osborn, Victoria A. Lessoway, Robert N. Rohling, Daniel P. Borschneck, Purang Abolmaesumi, Parvin Mousavi:
A global CT to US registration of the lumbar spine. Image-Guided Procedures 2014: 90362O - [c38]Melissa Trezise, David G. Gobbi, James Cordy, Purang Abolmaesumi, Parvin Mousavi:
SimITK: model driven engineering for medical imaging. Image-Guided Procedures 2014: 903622 - 2013
- [j10]Mohammad I. Daoud, Parvin Mousavi, Farhad Imani, Robert Rohling, Purang Abolmaesumi:
Tissue Classification Using Ultrasound-Induced Variations in Acoustic Backscattering Features. IEEE Trans. Biomed. Eng. 60(2): 310-320 (2013) - [j9]Farhad Imani, Purang Abolmaesumi, Mark Z. Wu, Andras Lasso, Everette Clif Burdette, Goutam Ghoshal, Tamas Heffter, Emery Williams, Paul Neubauer, Gabor Fichtinger, Parvin Mousavi:
Ultrasound-Guided Characterization of Interstitial Ablated Tissue Using RF Time Series: Feasibility Study. IEEE Trans. Biomed. Eng. 60(6): 1608-1618 (2013) - [j8]Colin J. Sutherland, Keyvan Hashtrudi-Zaad, Richard W. Sellens, Purang Abolmaesumi, Parvin Mousavi:
An Augmented Reality Haptic Training Simulator for Spinal Needle Procedures. IEEE Trans. Biomed. Eng. 60(11): 3009-3018 (2013) - [c37]Sayyed Mostafa Mostafavi, Janice I. Glasgow, Sean P. Dukelow, Stephen H. Scott, Parvin Mousavi:
Prediction of stroke-related diagnostic and prognostic measures using robot-based evaluation. ICORR 2013: 1-6 - [c36]Farhad Imani, Purang Abolmaesumi, Eli Gibson, Amir Khojaste, Mena Gaed, Madeleine Moussa, Jose A. Gomez, Cesare Romagnoli, Robert Siemens, Michael Leveridge, Silvia D. Chang, Aaron Fenster, Aaron D. Ward, Parvin Mousavi:
Ultrasound-Based Characterization of Prostate Cancer: An in vivo Clinical Feasibility Study. MICCAI (2) 2013: 279-286 - [c35]Irene Ayukawa, Tamas Ungi, Keyvan Hashtrudi-Zaad, Gabor Fichtinger, Parvin Mousavi:
Experimental assessment of error in an electromagnetically-tracked ultrasound-guided needle navigation system. Image-Guided Procedures 2013: 867124 - 2012
- [j7]Sean Gill, Purang Abolmaesumi, Gabor Fichtinger, Jonathan Boisvert, David R. Pichora, Dan P. Borschneck, Parvin Mousavi:
Biomechanically constrained groupwise ultrasound to CT registration of the lumbar spine. Medical Image Anal. 16(3): 662-674 (2012) - [j6]Andrew Lang, Parvin Mousavi, Sean Gill, Gabor Fichtinger, Purang Abolmaesumi:
Multi-modal registration of speckle-tracked freehand 3D ultrasound to CT in the lumbar spine. Medical Image Anal. 16(3): 675-686 (2012) - [j5]Tamas Ungi, Purang Abolmaesumi, Rayhan Jalal, Mattea Welch, Irene Ayukawa, Simrin Nagpal, Andras Lasso, Melanie Jaeger, Daniel P. Borschneck, Gabor Fichtinger, Parvin Mousavi:
Spinal Needle Navigation by Tracked Ultrasound Snapshots. IEEE Trans. Biomed. Eng. 59(10): 2766-2772 (2012) - [c34]Javad Hashemi, Evelyn Morin, Parvin Mousavi, Keyvan Hashtrudi-Zaad:
Enhanced multi-site EMG-force estimation using contact pressure. EMBC 2012: 3098-3101 - 2011
- [j4]Lili Wang, Pouya Khankhanian, Sergio Baranzini, Parvin Mousavi:
iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks. BMC Bioinform. 12: 380 (2011) - [c33]Zhen Wang, Parvin Mousavi:
Reverse engineering of gene regulatory networks: A systems approach. CIBCB 2011: 184-189 - [c32]Colin J. Sutherland, Keyvan Hashtrudi-Zaad, Purang Abolmaesumi, Parvin Mousavi:
Towards an augmented ultrasound guided spinal needle insertion system. EMBC 2011: 3459-3462 - [c31]Javad Hashemi, Evelyn Morin, Parvin Mousavi, Keyvan Hashtrudi-Zaad:
Joint angle-based EMG amplitude calibration. EMBC 2011: 4439-4442 - [c30]Siavash Khallaghi, Parvin Mousavi, Dan P. Borschneck, Gabor Fichtinger, Purang Abolmaesumi:
Biomechanically Constrained Groupwise Statistical Shape Model to Ultrasound Registration of the Lumbar Spine. IPCAI 2011: 47-54 - [c29]Farhad Imani, Mark Z. Wu, Andras Lasso, Everette Clif Burdette, Mohammad I. Daoud, Gabor Fitchinger, Purang Abolmaesumi, Parvin Mousavi:
Monitoring of Tissue Ablation Using Time Series of Ultrasound RF Data. MICCAI (1) 2011: 379-386 - [c28]Sahar Ghanavati, Parvin Mousavi, Gabor Fichtinger, Purang Abolmaesumi:
Phantom validation for ultrasound to statistical shape model registration of human pelvis. Image-Guided Procedures 2011: 79642U - [c27]Siavash Khallaghi, Purang Abolmaesumi, Ren Hui Gong, Elvis C. S. Chen, Sean Gill, Jonathan Boisvert, David R. Pichora, Dan P. Borschneck, Gabor Fichtinger, Parvin Mousavi:
GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images. Image-Guided Procedures 2011: 79642W - [c26]Andrew W. L. Dickinson, Parvin Mousavi, David G. Gobbi, Purang Abolmaesumi:
SimITK: rapid ITK prototyping using the Simulink visual programming environment. Image-Guided Procedures 2011: 796438 - 2010
- [j3]Simon Knott, Sara Mostafavi, Parvin Mousavi:
A neural network based modeling and validation approach for identifying gene regulatory networks. Neurocomputing 73(13-15): 2419-2429 (2010) - [j2]James Monaco, John Tomaszewski, Michael D. Feldman, Ian S. Hagemann, Mehdi Moradi, Parvin Mousavi, Alexander Boag, Chris Davidson, Purang Abolmaesumi, Anant Madabhushi:
High-throughput detection of prostate cancer in histological sections using probabilistic pairwise Markov models. Medical Image Anal. 14(4): 617-629 (2010) - [c25]Siavash Khallaghi, Parvin Mousavi, Ren Hui Gong, Sean Gill, Jonathan Boisvert, Gabor Fichtinger, David R. Pichora, Dan P. Borschneck, Purang Abolmaesumi:
Registration of a Statistical Shape Model of the Lumbar Spine to 3D Ultrasound Images. MICCAI (2) 2010: 68-75 - [c24]Sahar Ghanavati, Parvin Mousavi, Gabor Fichtinger, Pezhman Foroughi, Purang Abolmaesumi:
Multi-slice to volume registration of ultrasound data to a statistical atlas of human pelvis. Image-Guided Procedures 2010: 76250O - [c23]Abtin Rasoulian, Parvin Mousavi, Mehdi Hedjazi Moghari, Pezhman Foroughi, Purang Abolmaesumi:
Group-wise feature-based registration of CT and ultrasound images of spine. Image-Guided Procedures 2010: 76250R - [c22]Elvis C. S. Chen, Parvin Mousavi, Sean Gill, Gabor Fichtinger, Purang Abolmaesumi:
Ultrasound guided spine needle insertion. Image-Guided Procedures 2010: 762538
2000 – 2009
- 2009
- [c21]Mohammad Aboofazeli, Purang Abolmaesumi, Parvin Mousavi, Gabor Fichtinger:
A New Scheme for Curved Needle Segmentation in Three-Dimensional Ultrasound Images. ISBI 2009: 1067-1070 - [c20]Mohammad Aboofazeli, Purang Abolmaesumi, Mehdi Moradi, Eric Sauerbrei, Robert Siemens, Alexander Boag, Parvin Mousavi:
Automated detection of prostate cancer using wavelet transform features of ultrasound RF time series. Computer-Aided Diagnosis 2009: 72603J - [c19]Sean Gill, Parvin Mousavi, Gabor Fichtinger, Elvis C. S. Chen, Jonathan Boisvert, David R. Pichora, Purang Abolmaesumi:
Biomechanically Constrained Groupwise US to CT Registration of the Lumbar Spine. MICCAI (1) 2009: 803-810 - [c18]Sean Gill, Parvin Mousavi, Gabor Fichtinger, David R. Pichora, Purang Abolmaesumi:
Group-wise registration of ultrasound to CT images of human vertebrae. Image-Guided Procedures 2009: 72611O - [c17]James Monaco, John Tomaszewski, Michael D. Feldman, Mehdi Moradi, Parvin Mousavi, Alexander Boag, Chris Davidson, Purang Abolmaesumi, Anant Madabhushi:
Probabilistic pairwise Markov models: application to prostate cancer detection. Image Processing 2009: 725903 - 2008
- [c16]Maryam Salehi, Alan Ableson, Parvin Mousavi:
Reverse engineering time series of gene expression data using Dynamic Bayesian networks and covariance matrix adaptation evolution strategy with explicit memory. CIBCB 2008: 98-105 - [c15]Maryam Salehi, Paul G. Young, Parvin Mousavi:
Reverse engineering of the transcriptional subnetwork in the yeast cell cycle pathway using Dynamic Bayesian Networks and evolutionary search. CIBCB 2008: 106-111 - [c14]Mehdi Moradi, Parvin Mousavi, Robert Siemens, Eric Sauerbrei, Alexander Boag, Purang Abolmaesumi:
Prostate Cancer Probability Maps Based on Ultrasound RF Time Series and SVM Classifiers. MICCAI (1) 2008: 76-84 - 2007
- [c13]Mehdi Moradi, Parvin Mousavi, Purang Abolmaesumi:
Tissue Characterization Using Fractal Dimension of High Frequency Ultrasound RF Time Series. MICCAI (2) 2007: 900-908 - 2006
- [c12]Simon Knott, Parvin Mousavi, Sergio Baranzini:
A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral Blood. CIBCB 2006: 1-8 - [c11]Simon Knott, Parvin Mousavi, Sergio Baranzini:
A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral Blood. CIBCB 2006: 1-8 - [c10]Sara Mostafavi, Sergio Baranzini, Jorge Oksenberg, Parvin Mousavi:
A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple Sclerosis. CIBCB 2006: 1-8 - [c9]Kathrin Tyryshkin, Parvin Mousavi, David R. Pichora, Purang Abolmaesumi:
Identification of Anatomical Landmarks for Registration of CT and Ultrasound Images in Computer-Assisted Shoulder Arthroscopy. EMBC 2006: 416-419 - [c8]Mehdi Moradi, Purang Abolmaesumi, Phillip A. Isotalo, Robert Siemens, Eric Sauerbrei, Parvin Mousavi:
Detection of Prostate Cancer from RF Ultrasound Echo Signals Using Fractal Analysis. EMBC 2006: 2400-2403 - [c7]Sara Mostafavi, Sergio Baranzini, Jorge Oksernberg, Parvin Mousavi:
Predictive modeling of therapy response in multiple sclerosis using gene expression data. EMBC 2006: 5519-5522 - [c6]Simon Knott, Sara Mostafavi, Parvin Mousavi:
A Neural Network Based Approach for Inference and Verification of Transcriptional Regulatory Interactions. EMBC 2006: 5838-5841 - [c5]Mehdi Moradi, Purang Abolmaesumi, Parvin Mousavi:
Deformable registration using scale space keypoints. Image Processing 2006: 61442G - 2005
- [c4]Simon Knott, Sayyed Mostafa Mostafavi, Parvin Mousavi, Janice I. Glasgow:
Genetic network inference via gene set stochastic sampling and sensitivity analysis. CCA 2005: 148-153 - [c3]Cheryl Chan, Parvin Mousavi:
Discovery of Gene Expression Patterns across Multiple Cancer Types. BIBE 2005: 121-128 - 2002
- [j1]Parvin Mousavi, Rabab Kreidieh Ward, Sidney S. Fels, Mohammad Sameti, Peter M. Lansdorp:
Feature analysis and centromere segmentation of human chromosome images using an iterative fuzzy algorithm. IEEE Trans. Biomed. Eng. 49(4): 363-371 (2002) - 2001
- [c2]Parvin Mousavi, Sidney S. Fels, Rabab Kreidieh Ward, Peter M. Lansdorp:
Classification of homologous human chromosomes using mutual information maximization. ICIP (2) 2001: 845-848 - 2000
- [c1]Parvin Mousavi, Rabab Kreidieh Ward, Peter M. Lansdorp, Sidney S. Fels:
Multi-Feature Analysis and Classification of Human Chromosome Images Using Centromere Segmentation Algorithms. ICIP 2000: 152-155
Coauthor Index
[i12] [i11] [j58] [j57] [j56] [c113] [c110] [c109] [c108] [c107] [i10] [i9] [j54] [j53] [i8] [i6] [j50] [j49] [j47] [j46] [c95] [c94] [i5] [i4] [j39] [c88] [c84] [c79] [j34] [j33] [c78] [c77] [c75] [j30] [c66] [j29] [j28] [j27] [j26] [j25] [c59] [c58] [j24] [j23] [j22] [c57] [c56] [c54] [j21] [j20] [j19] [c53] [c52] [c51] [c50] [c49] [j17] [j16] [j15] [j14] [j13] [j12] [c48] [c47] [c46] [c45] [j11] [c41] [c40] [c39] [c38] [j10] [j9] [j8] [c36] [j7] [j6] [j5] [c32] [c30] [c29] [c28] [c27] [c26] [j2] [c25] [c24] [c23] [c22] [c21] [c20] [c19] [c18] [c17] [c14] [c13] [c9] [c8] [c5]
Dan P. Borschneck
aka: Daniel P. Borschneck
aka: Daniel P. Borschneck
[j56] [j55] [c112] [c111] [j52] [c106] [c105] [c104] [c103] [c102] [c101] [c100] [c99] [c98] [c97] [j48] [j46] [j43] [j42] [j41] [c93] [c92] [j40] [j39] [j38] [c87] [c85] [c83] [c81] [c80] [j35] [j32] [c77] [c76] [c74] [c71] [c63] [c62] [c55] [j20] [c52] [j9] [c35] [j7] [j6] [j5] [c30] [c28] [c27] [c25] [c24] [c22] [c21] [c19] [c18]
Robert Rohling
aka: Robert N. Rohling
aka: Robert N. Rohling
Tim Salcudean
aka: Septimiu E. Salcudean
aka: Septimiu E. Salcudean
Alice M. L. Santilli
aka: Alice Maria Leondina Santilli
aka: Alice Maria Leondina Santilli
Robert Siemens
aka: D. Robert Siemens
aka: D. Robert Siemens
Baris Turkbey
aka: Ismail Baris Turkbey
aka: Ismail Baris Turkbey
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