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Andrei Paun
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2020 – today
- 2024
- [j55]Victor Mitrana, Andrei Paun, Mihaela Paun, José-Ramón Sánchez-Couso:
Jump complexity of finite automata with translucent letters. Theor. Comput. Sci. 992: 114450 (2024) - [j54]Ion Petre
, Andrei Paun:
Special issue on Foundational Methods in Systems Biology. Theor. Comput. Sci. 1005: 114641 (2024) - 2022
- [j53]Nicoleta Siminea
, Victor-Bogdan Popescu
, José Ángel Sánchez Martín, Daniela Florea
, Georgiana Gavril
, Ana Maria Gheorghe
, Corina Itcus
, Krishna Kanhaiya
, Octavian Pacioglu
, Laura Ioana Popa
, Romica Trandafir
, Maria Iris Tusa
, Manuela Sidoroff
, Mihaela Paun
, Eugen Czeizler
, Andrei Paun
, Ion Petre
:
Network analytics for drug repurposing in COVID-19. Briefings Bioinform. 23(1) (2022) - [j52]Yara Hamshawi, Florin-Daniel Bîlbîe, Andrei Paun, Assaf Malka, Ron Piran
:
P systems with protein rules. J. Frankl. Inst. 359(8): 3779-3807 (2022) - [j51]José-Ramón Sánchez-Couso, Fernando Arroyo, Victor Mitrana, Andrei Paun, Mihaela Paun:
Accepting multiple splicing systems. J. King Saud Univ. Comput. Inf. Sci. 34(6 Part A): 2910-2915 (2022) - [e2]Ion Petre
, Andrei Paun
:
Computational Methods in Systems Biology - 20th International Conference, CMSB 2022, Bucharest, Romania, September 14-16, 2022, Proceedings. Lecture Notes in Computer Science 13447, Springer 2022, ISBN 978-3-031-15033-3 [contents] - 2021
- [j50]Victor Mitrana, Andrei Paun, Mihaela Paun, José Ángel Sánchez Martín:
Non-preserving Accepting Splicing Systems. J. Autom. Lang. Comb. 26(1-2): 109-124 (2021) - [j49]Henning Bordihn, Victor Mitrana
, Andrei Paun, Mihaela Paun:
Hairpin completions and reductions: semilinearity properties. Nat. Comput. 20(2): 193-203 (2021) - [j48]Florin-Daniel Bîlbîe, Andrei Paun:
Small SNQ P Systems with multiple types of spikes. Theor. Comput. Sci. 862: 14-23 (2021) - 2020
- [j47]Andrei Paun, Florin-Daniel Bîlbîe:
Universality of SNQ P Systems Using One Type of Spikes and Restrictive Rule Application. Int. J. Found. Comput. Sci. 31(1): 117-132 (2020) - [j46]Fernando Arroyo, Victor Mitrana, Andrei Paun
, Mihaela Paun, José-Ramón Sánchez-Couso:
On the group memory complexity of extended finite automata over groups. J. Log. Algebraic Methods Program. 117: 100605 (2020)
2010 – 2019
- 2019
- [c40]Victor Mitrana, Andrei Paun, Mihaela Paun:
How Complex is to Solve a Hard Problem with Accepting Splicing Systems. COMPLEXIS 2019: 27-35 - [c39]Fernando Arroyo
, Victor Mitrana, Andrei Paun, Mihaela Paun:
A Multi-agent Model for Cell Population. KES-AMSTA 2019: 95-104 - [c38]Henning Bordihn, Victor Mitrana, Andrei Paun, Mihaela Paun:
Further Properties of Self-assembly by Hairpin Formation. UCNC 2019: 37-51 - 2018
- [j45]Zhiqiang Zhang, Tingfang Wu, Andrei Paun
, Linqiang Pan:
Universal enzymatic numerical P systems with small number of enzymatic variables. Sci. China Inf. Sci. 61(9): 092103:1-092103:12 (2018) - [j44]Tingfang Wu, Florin-Daniel Bîlbîe, Andrei Paun
, Linqiang Pan, Ferrante Neri
:
Simplified and Yet Turing Universal Spiking Neural P Systems with Communication on Request. Int. J. Neural Syst. 28(8): 1850013:1-1850013:19 (2018) - [j43]Alexandru Amarioarei, Gefry Barad, Elena Czeizler, Eugen Czeizler, Ana-Maria Dobre, Corina Itcus, Andrei Paun, Mihaela Paun, Romica Trandafir, Iris Tusa:
One Dimensional DNA Tiles Self Assembly Model Simulation. Int. J. Unconv. Comput. 13(4-5): 399-415 (2018) - [j42]Henning Bordihn, Victor Mitrana
, Maria C. Negru, Andrei Paun
, Mihaela Paun
:
Small networks of polarized splicing processors are universal. Nat. Comput. 17(4): 799-809 (2018) - [j41]Tingfang Wu, Andrei Paun
, Zhiqiang Zhang, Linqiang Pan
:
Spiking Neural P Systems With Polarizations. IEEE Trans. Neural Networks Learn. Syst. 29(8): 3349-3360 (2018) - [c37]Andrei Paun, Florin-Daniel Bîlbîe:
A Look at the Descriptional Complexity of SNQ P Systems. Enjoying Natural Computing 2018: 228-236 - [c36]Alexandru Amarioarei
, Gefry Barad, Eugen Czeizler
, Ana-Maria Dobre
, Corina Itcus
, Victor Mitrana
, Andrei Paun
, Mihaela Paun
, Frankie Spencer, Romica Trandafir, Iris Tusa
:
DNA-Guided Assembly of Nanocellulose Meshes. TPNC 2018: 253-265 - 2017
- [j40]Andrei Paun
, Alfonso Rodríguez-Patón:
P Systems Simulating Bacterial Conjugation: Universality and Properties. Fundam. Informaticae 153(1-2): 87-103 (2017) - [j39]Yansen Su, Tingfang Wu, Fei Xu, Andrei Paun
:
Spiking Neural P Systems with Rules on Synapses Working in Sum Spikes Consumption Strategy. Fundam. Informaticae 156(2): 187-208 (2017) - [j38]Haiming Chen, Mihai Ionescu, Andrei Paun
, Gheorghe Paun:
On trace languages generated by (small) spiking neural P systems. Theor. Comput. Sci. 682: 57-66 (2017) - [j37]Yang Li, Andrei Paun
, Mihaela Paun
:
Improvements on contours based segmentation for DNA microarray image processing. Theor. Comput. Sci. 701: 174-189 (2017) - [c35]Henning Bordihn, Victor Mitrana, Andrei Paun, Mihaela Paun
:
Networks of Polarized Splicing Processors. TPNC 2017: 165-177 - 2016
- [j36]Andrei Paun
, Clayton Chandler, Chokchai Leangsuksun, Mihaela Paun
:
A failure index for HPC applications. J. Parallel Distributed Comput. 93-94: 146-153 (2016) - [j35]Zhiqiang Zhang
, Tingfang Wu, Andrei Paun, Linqiang Pan
:
Numerical P systems with migrating variables. Theor. Comput. Sci. 641: 85-108 (2016) - 2015
- [j34]Mihaela Paun
, Yang Li
, Yuan Cheng, Iris Tusa
, Andrei Paun:
Segmenting microarray images using a contour-based method. Theor. Comput. Sci. 608: 108-118 (2015) - [j33]Xingyi Zhang, Linqiang Pan
, Andrei Paun
:
On the Universality of Axon P Systems. IEEE Trans. Neural Networks Learn. Syst. 26(11): 2816-2829 (2015) - 2014
- [j32]Andrei Paun
, Petr Sosík
:
Three Universal Homogeneous Spiking Neural P Systems Using Max Spike. Fundam. Informaticae 134(1-2): 167-182 (2014) - 2013
- [j31]Petr Sosík
, Andrei Paun
, Alfonso Rodríguez-Patón
:
P systems with proteins on membranes characterize PSPACE. Theor. Comput. Sci. 488: 78-95 (2013) - 2012
- [c34]Tanvir Ahmed, Garrett DeLancy, Andrei Paun:
A Case-Study on the Influence of Noise to Log-Gain Principles for Flux Dynamic Discovery. Int. Conf. on Membrane Computing 2012: 88-100 - 2011
- [j30]Andrei Paun
, Mihaela Paun
, Alfonso Rodríguez-Patón
, Manuela Sidoroff:
P Systems with proteins on Membranes: a Survey. Int. J. Found. Comput. Sci. 22(1): 39-53 (2011) - [j29]John Jack, Andrei Paun
, Alfonso Rodríguez-Patón
:
A review of the nondeterministic waiting time algorithm. Nat. Comput. 10(1): 139-149 (2011) - [c33]Andrei Paun, Mihaela Paun
, Alfonso Rodríguez-Patón
, John Jack:
Poster: Biochemical signaling: A discrete simulation with memory enhancement. ICCABS 2011: 257 - [c32]Andrei Paun, Manuela Sidoroff:
Sequentiality Induced by Spike Number in SNP Systems: Small Universal Machines. Int. Conf. on Membrane Computing 2011: 333-345
2000 – 2009
- 2009
- [j28]Andrei Paun
, Mihaela Paun
, Alfonso Rodríguez-Patón
:
On the Hopcroft's minimization technique for DFA and DFCA. Theor. Comput. Sci. 410(24-25): 2424-2430 (2009) - [j27]Oscar H. Ibarra, Andrei Paun
, Alfonso Rodríguez-Patón
:
Sequential SNP systems based on min/max spike number. Theor. Comput. Sci. 410(30-32): 2982-2991 (2009) - [j26]John Jack, Andrei Paun:
Discrete Modeling of Biochemical Signaling with Memory Enhancement. Trans. Comp. Sys. Biology 11: 200-215 (2009) - [c31]Petr Sosík
, Andrei Paun, Alfonso Rodríguez-Patón
, David Pérez:
On the Power of Computing with Proteins on Membranes. Workshop on Membrane Computing 2009: 448-460 - [c30]John Jack, Andrei Paun:
The Nondeterministic Waiting Time Algorithm: A Review. DCFS 2009: 29-46 - 2008
- [j25]John Jack, Alfonso Rodríguez-Patón
, Oscar H. Ibarra, Andrei Paun:
Discrete Nondeterministic Modeling of the Fas Pathway. Int. J. Found. Comput. Sci. 19(5): 1147-1162 (2008) - [j24]Oscar H. Ibarra, Sara Woodworth, Fang Yu, Andrei Paun:
On spiking neural P systems and partially blind counter machines. Nat. Comput. 7(1): 3-19 (2008) - [j23]Haiming Chen, Mihai Ionescu, Tseren-Onolt Ishdorj
, Andrei Paun, Gheorghe Paun, Mario J. Pérez-Jiménez
:
Spiking neural P systems with extended rules: universality and languages. Nat. Comput. 7(2): 147-166 (2008) - [j22]Oscar H. Ibarra, Andrei Paun:
Computing with cells: membrane systems - some complexity issues. Int. J. Parallel Emergent Distributed Syst. 23(5): 347-365 (2008) - [c29]Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón
:
Sequentiality Induced by Spike Number in SNP Systems. DNA 2008: 179-190 - [c28]John Jack, Andrei Paun, Alfonso Rodríguez-Patón
:
Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation. Workshop on Membrane Computing 2008: 246-259 - [c27]Andrei Paun, Mihaela Paun
, Alfonso Rodríguez-Patón
:
Hopcroft's Minimization Technique: Queues or Stacks?. CIAA 2008: 78-91 - 2007
- [j21]Andrei Paun
, Gheorghe Paun:
Small universal spiking neural P systems. Biosyst. 90(1): 48-60 (2007) - [j20]Oscar H. Ibarra, Andrei Paun
, Gheorghe Paun, Alfonso Rodríguez-Patón
, Petr Sosík
, Sara Woodworth:
Normal forms for spiking neural P systems. Theor. Comput. Sci. 372(2-3): 196-217 (2007) - [c26]Andrei Paun, Alfonso Rodríguez-Patón:
On Flip-Flop Membrane Systems with Proteins. Workshop on Membrane Computing 2007: 414-427 - [r1]Andrei Paun, Oscar H. Ibarra:
Membrane Systems. Handbook of Parallel Computing 2007 - [i1]Andrei Paun:
On the Hopcroft's minimization algorithm. CoRR abs/0705.1986 (2007) - 2006
- [j19]Andrei Paun, Bianca Popa:
P Systems with Proteins on Membranes. Fundam. Informaticae 72(4): 467-483 (2006) - [j18]Cezar Câmpeanu
, Andrei Paun
, Jason R. Smith:
Incremental construction of minimal deterministic finite cover automata. Theor. Comput. Sci. 363(2): 135-148 (2006) - [c25]Haiming Chen, Mihai Ionescu, Andrei Paun, Gheorghe Paun, Bianca Popa:
On Trace Languages Generated by (Small) Spiking Neural P Systems. DCFS 2006: 94-105 - [c24]Cezar Câmpeanu, Andrei Paun, Jason R. Smith:
Tight Bounds for the State Complexity of Deterministic Cover Automata. DCFS 2006: 223-231 - [c23]Andrei Paun, Bianca Popa:
P Systems with Proteins on Membranes and Membrane Division. Developments in Language Theory 2006: 292-303 - [c22]Mihai Ionescu, Andrei Paun, Gheorghe Paun, Mario J. Pérez-Jiménez
:
Computing with Spiking Neural P Systems: Traces and Small Universal Systems. DNA 2006: 1-16 - [c21]Andrei Paun, Mario J. Pérez-Jiménez
, Francisco José Romero-Campero
:
Modeling Signal Transduction Using P Systems. Workshop on Membrane Computing 2006: 100-122 - [c20]Hitesh Nagda, Andrei Paun, Alfonso Rodríguez-Patón
:
P Systems with Symport/Antiport and Time. Workshop on Membrane Computing 2006: 463-476 - [c19]Oscar H. Ibarra, Sara Woodworth, Fang Yu, Andrei Paun:
On Spiking Neural P Systems and Partially Blind Counter Machines. UC 2006: 113-129 - 2005
- [j17]Cezar Câmpeanu, Lila Kari, Andrei Paun:
Results on Transforming NFA into DFCA. Fundam. Informaticae 64(1-4): 53-63 (2005) - [j16]Rudolf Freund, Marion Oswald, Andrei Paun:
Optimal results for the computational completeness of gemmating (tissue) P systems. Int. J. Found. Comput. Sci. 16(5): 929-942 (2005) - [j15]Rudolf Freund, Andrei Paun
:
P systems with active membranes and without polarizations. Soft Comput. 9(9): 657-663 (2005) - [c18]Oscar H. Ibarra, Andrei Paun:
Counting Time in Computing with Cells. DNA 2005: 112-128 - [c17]Cezar Câmpeanu
, Andrei Paun, Jason R. Smith:
An Incremental Algorithm for Constructing Minimal Deterministic Finite Cover Automata. CIAA 2005: 90-103 - 2004
- [j14]Shankara Narayanan Krishna, Andrei Paun:
Results on Catalytic and Evolution-Communication P Systems. New Gener. Comput. 22(4): 377-394 (2004) - [c16]Lila Kari, Carlos Martín-Vide, Andrei Paun:
On the Universality of P Systems with Minimal Symport/Antiport Rules. Aspects of Molecular Computing 2004: 254-265 - [c15]Cezar Câmpeanu, Andrei Paun:
Lower bounds for NFA to DCFA Transformations. DCFS 2004: 121-130 - [c14]Rudolf Freund, Marion Oswald, Andrei Paun:
Gemmating P Systems are Computationally Complete with Four Membranes. DCFS 2004: 191-203 - [c13]Cezar Câmpeanu
, Andrei Paun:
Computing Beyond the Turing Limit Using the H Systems. DNA 2004: 24-34 - [c12]Rudolf Freund, Marion Oswald, Andrei Paun:
P Systems Generating Trees. Workshop on Membrane Computing 2004: 309-319 - [c11]Cezar Câmpeanu
, Andrei Paun:
Tight Bounds for NFA to DFCA Transformations for Binary Alphabets. CIAA 2004: 306-307 - 2003
- [j13]Cezar Câmpeanu
, Andrei Paun:
Counting The Number Of Minimal Dfca Obtained By Merging States. Int. J. Found. Comput. Sci. 14(6): 995-1006 (2003) - [j12]Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
Unexpected universality results for three classes of P systems with symport/antiport. Nat. Comput. 2(4): 337-348 (2003) - [c10]Francesco Bernardini, Andrei Paun:
Universality of Minimal Symport/Antiport: Five Membranes Suffice. Workshop on Membrane Computing 2003: 43-54 - 2002
- [j11]Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
Membrane Computing: New Results, New Problems. Bull. EATCS 78: 204-220 (2002) - [j10]Carlos Martín-Vide, Andrei Paun, Gheorghe Paun, Grzegorz Rozenberg:
ReMembrane Systems with Coupled Transport: Universality and Normal Forms. Fundam. Informaticae 49(1-3): 1-15 (2002) - [j9]Cezar Câmpeanu
, Andrei Paun, Sheng Yu:
An Efficient Algorithm for Constructing Minimal Cover Automata for Finite Languages. Int. J. Found. Comput. Sci. 13(1): 83-97 (2002) - [j8]Andrei Paun, Gheorghe Paun, Grzegorz Rozenberg:
Computing by Communication in Networks of Membranes. Int. J. Found. Comput. Sci. 13(6): 779-798 (2002) - [j7]Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
On the Power of P Systems with Symport Rules. J. Univers. Comput. Sci. 8(2): 317-331 (2002) - [j6]Andrei Paun
:
P Systems with Global Rules. Theory Comput. Syst. 35(5): 471-481 (2002) - [j5]Andrei Paun, Gheorghe Paun:
The Power of Communication: P Systems with Symport/Antiport. New Gener. Comput. 20(3): 295-306 (2002) - [c9]Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
Unexpected Universality Results for Three Classes of P Systems with Symport/Antiport. DNA 2002: 281-290 - [c8]Cezar Câmpeanu
, Andrei Paun:
The Number of Similarity Relations and the Number of Minimal Deterministic Finite Cover Automata. CIAA 2002: 67-76 - [c7]Rudolf Freund, Andrei Paun:
Membrane Systems with Symport/Antiport Rules: Universality Results. WMC-CdeA 2002: 270-287 - 2001
- [j4]Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón:
Further Remarks on P Systems with Symport Rules. Sci. Ann. Cuza Univ. 10: 3-18 (2001) - [c6]Lila Kari, Andrei Paun:
String Operations Suggested by DNA Biochemistry: The Balanced Cut Operation. Words, Semigroups, and Transductions 2001: 275-287 - [c5]Andrei Paun, Mihaela Paun:
On membrane computing based on splicing. Where Mathematics, Computer Science, Linguistics and Biology Meet 2001: 409-422 - [c4]Andrei Paun:
On P Systems with Global Rules. DNA 2001: 329-339 - [e1]Sheng Yu, Andrei Paun:
Implementation and Application of Automata, 5th International Conference, CIAA 2000, London, Ontario, Canada, July 24-25, 2000, Revised Papers. Lecture Notes in Computer Science 2088, Springer 2001, ISBN 3-540-42491-1 [contents] - 2000
- [j3]Andrei Paun:
On the Diameter of Various Classes of H Systems. J. Autom. Lang. Comb. 5(3): 315-324 (2000) - [c3]Andrei Paun:
On P Systems with Active Membranes. UMC 2000: 187-201 - [c2]Andrei Paun, Nicolae Santean, Sheng Yu:
An O(n2) Algorithm for Constructing Minimal Cover Automata for Finite Languages. CIAA 2000: 243-251
1990 – 1999
- 1999
- [j2]Andrei Paun:
On Time-Varying H Systems. Bull. EATCS 67: 157-164 (1999) - [c1]Andrei Paun, Mihaela Paun:
State and Transition Complexity of Watson-Crick Finite Automata. FCT 1999: 409-420 - 1997
- [j1]Andrei Paun:
Controlled H Systems of Small Radius. Fundam. Informaticae 31(2): 185-193 (1997)
Coauthor Index
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