Assessment of selection pressure exerted on genes from complete pangenomes helps to improve the accuracy in the prediction of new genes. - Rubio, Alejandro; Jiménez, Juan; Pérez-Pulido, Antonio J. (Briefings Bioinform., 2022)

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators. - Pérez-Pulido, Antonio J.; Asencio-Cortés, Gualberto; Brokate-Llanos, Ana M.; Brea-Calvo, Gloria; Rodríguez-Griñolo, Rosario; Garzón, Andrés; Muñoz, Manuel J. (Briefings Bioinform., 2021)

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats. - Rubio, Alejandro; Mier, Pablo; Andrade-Navarro, Miguel A.; Garzón, Andrés; Jiménez, Juan; Pérez-Pulido, Antonio J. (Database J. Biol. Databases Curation, 2020)

Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome. - Casimiro-Soriguer, C. S.; Rigual, M. M.; Brokate-Llanos, Ana M.; Muñoz, Manuel J.; Garzón, Andrés; Pérez-Pulido, Antonio J.; Jiménez, Juan (Bioinform., 2020)

Automated selection of homologs to track the evolutionary history of proteins. - Mier, Pablo; Pérez-Pulido, Antonio J.; Andrade-Navarro, Miguel A. (BMC Bioinform., 2018)

Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels. - Parras-Moltó, Marcos; Campos-Laborie, Francisco J.; García-Diéguez, Juan; Rodríguez-Griñolo, M. R.; Pérez-Pulido, Antonio J. (BMC Bioinform., 2013)

A biclustering algorithm for extracting bit-patterns from binary datasets. - Rodríguez-Baena, Domingo S.; Pérez-Pulido, Antonio J.; Aguilar-Ruiz, Jesús S. (Bioinform., 2011)

MOWServ: a web client for integration of bioinformatic resources. - Ramírez, Sergio; Muñoz-Merida, Antonio; Karlsson, Tor Johan Mikael; García, Maximiliano; Pérez-Pulido, Antonio J.; Claros, M. Gonzalo; Trelles, Oswaldo (Nucleic Acids Res., 2010)

Intelligent client for integrating bioinformatics services. - Navas-Delgado, Ismael; Rojano-Muñoz, Maria del Mar; Ramírez, Sergio; Pérez-Pulido, Antonio J.; León, Eduardo Andrés; Montes, José Francisco Aldana; Trelles, Oswaldo (Bioinform., 2006)

Distributed Execution of Workflows in the INB. - Navas-Delgado, Ismael; Pérez-Pulido, Antonio J.; Montes, José Francisco Aldana; Trelles, Oswaldo (2006)

Services Integration and Task-scheduling in Bioinformatics Grids. - Ramírez, Sergio; de-Andrés, Enrique; Navas-Delgado, Ismael; Pérez-Pulido, Antonio J.; Montes, José Francisco Aldana; Trelles, Oswaldo (2005)

AnaGram: protein function assignment. - Pérez-Pulido, Antonio J.; Thode, Guillermo; Trelles, Oswaldo (Bioinform., 2004)

Gene annotation from scientific literature using mappings between keyword systems. - Pérez-Pulido, Antonio J.; Perez-Iratxeta, Carolina; Bork, Peer; Thode, Guillermo; Andrade, Miguel A. (Bioinform., 2004)

Update on XplorMed: a web server for exploring scientific literature. - Perez-Iratxeta, Carolina; Pérez-Pulido, Antonio J.; Bork, Peer; Andrade, Miguel A. (Nucleic Acids Res., 2003)