Correcting a Substring Edit Error of Bounded Length. - Tang, Yuanyuan; Motamen, Sarvin; Lou, Hao; Whritenour, Kallie; Wang, Shuche; Gabrys, Ryan; Farnoud, Farzad (IEEE Trans. Commun., 2025)

Optimal Codes Correcting a Substring Edit. - Li, Yuting; Tang, Yuanyuan; Lou, Hao; Gabrys, Ryan; Hassanzadeh, Farzad Farnoud (IEEE Trans. Inf. Theory, 2025)

Linear List Decodable Edit-Correcting Codes with Rate Approaching 1. - Li, Yuting; Gabrys, Ryan; Farnoud, Farzad (CoRR, 2025)

Non-Binary Codes for Correcting a Burst of at Most t Deletions. - Wang, Shuche; Tang, Yuanyuan; Sima, Jin; Gabrys, Ryan; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2024)

Variance-aware Regret Bounds for Stochastic Contextual Dueling Bandits. - Di, Qiwei; Jin, Tao; Wu, Yue; Zhao, Heyang; Farnoud, Farzad; Gu, Quanquan (2024)

Borda Regret Minimization for Generalized Linear Dueling Bandits. - Wu, Yue; Jin, Tao; Di, Qiwei; Lou, Hao; Farnoud, Farzad; Gu, Quanquan (2024)

Asymptotically Optimal Codes Correcting One Substring Edit. - Yuting, L.; Tang, Yuanyuan; Lou, Hao; Gabrys, Ryan; Farnoud, Farzad (2024)

Low-Redundancy Codes for Correcting Multiple Short-Duplication and Edit Errors. - Tang, Yuanyuan; Wang, Shuche; Lou, Hao; Gabrys, Ryan; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2023)

A Statistical Analysis of Duplication Errors in the Nanopore Sequencing Channel. - Motamen, Sarvin; Lou, Hao; Farnoud, Farzad (2023)

Constrained Code for Data Storage in DNA via Nanopore Sequencing. - Whritenour, Kallie; Civelek, Mete; Farnoud, Farzad (2023)

Linial's Algorithm and Systematic Deletion-Correcting Codes. - Li, Yuting; Farnoud, Farzad (2023)

Correcting a substring edit error of bounded length. - Tang, Yuanyuan; Motamen, Sarvin; Lou, Hao; Whritenour, Kallie; Wang, Shuche; Gabrys, Ryan; Farnoud, Farzad (2023)

Borda Regret Minimization for Generalized Linear Dueling Bandits. - Wu, Yue; Jin, Tao; Lou, Hao; Farnoud, Farzad; Gu, Quanquan (CoRR, 2023)

Variance-Aware Regret Bounds for Stochastic Contextual Dueling Bandits. - Di, Qiwei; Jin, Tao; Wu, Yue; Zhao, Heyang; Farnoud, Farzad; Gu, Quanquan (CoRR, 2023)

Error-Correcting Codes for Short Tandem Duplication and Edit Errors. - Tang, Yuanyuan; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2022)

Data Deduplication With Random Substitutions. - Lou, Hao; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2022)

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons. - Wu, Yue; Jin, Tao; Lou, Hao; Xu, Pan; Farnoud, Farzad; Gu, Quanquan (2022)

Permutation Codes for Correcting a Burst of at Most $t$ Deletions. - Wang, Shuche; Tang, Yuanyuan; Gabrys, Ryan; Farnoud, Farzad (2022)

Universal Compression of Large Alphabets with Constrained Compressors. - Lou, Hao; Farnoud, Farzad (2022)

Correcting multiple short duplication and substitution errors. - Tang, Yuanyuan; Wang, Shuche; Gabrys, Ryan; Farnoud, Farzad (2022)

Active Ranking without Strong Stochastic Transitivity. - Lou, Hao; Jin, Tao; Wu, Yue; Xu, Pan; Gu, Quanquan; Farnoud, Farzad (2022)

Low-redundancy codes for correcting multiple short-duplication and edit errors. - Tang, Yuanyuan; Wang, Shuche; Lou, Hao; Gabrys, Ryan; Farnoud, Farzad (CoRR, 2022)

Non-binary Codes for Correcting a Burst of at Most t Deletions. - Wang, Shuche; Tang, Yuanyuan; Sima, Jin; Gabrys, Ryan; Farnoud, Farzad (CoRR, 2022)

Error-Correcting Codes for Noisy Duplication Channels. - Tang, Yuanyuan; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2021)

Error-correcting codes for short tandem duplications and at most $p$ substitutions. - Tang, Yuanyuan; Lou, Hao; Farnoud, Farzad (2021)

Non-binary Codes for Correcting a Burst of at Most 2 Deletions. - Wang, Shuche; Sima, Jin; Farnoud, Farzad (2021)

Asymptotic Analysis of Data Deduplication with a Constant Number of Substitutions. - Lou, Hao; Hassanzadeh, Farzad Farnoud (2021)

Correcting deletion errors in DNA data storage with enzymatic synthesis. - Tang, Yuanyuan; Farnoud, Farzad (2021)

Data Deduplication with Random Substitutions. - Lou, Hao; Farnoud, Farzad (CoRR, 2021)

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons. - Wu, Yue; Jin, Tao; Lou, Hao; Xu, Pan; Farnoud, Farzad; Gu, Quanquan (CoRR, 2021)

Evolution of $k$ -Mer Frequencies and Entropy in Duplication and Substitution Mutation Systems. - Lou, Hao; Schwartz, Moshe; Bruck, Jehoshua; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2020)

Single-Error Detection and Correction for Duplication and Substitution Channels. - Tang, Yuanyuan; Yehezkeally, Yonatan; Schwartz, Moshe; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2020)

Rank Aggregation via Heterogeneous Thurstone Preference Models. - Jin, Tao; Xu, Pan; Gu, Quanquan; Farnoud, Farzad (2020)

Efficient Search of Circular Repeats and MicroDNA Reintegration in DNA Sequences. - Wang, Yiming; Lou, Hao; Kumar, Pankaj; Dutta, Anindya; Farnoud, Farzad (2020)

Coding for Optimized Writing Rate in DNA Storage. - Jain, Siddharth; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2020)

Error-correcting Codes for Short Tandem Duplication and Substitution Errors. - Tang, Yuanyuan; Farnoud, Farzad (2020)

Data Deduplication with Random Substitutions. - Lou, Hao; Farnoud, Farzad (2020)

Coding for Optimized Writing Rate in DNA Storage. - Jain, Siddharth; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2020)

Error-correcting Codes for Noisy Duplication Channels. - Tang, Yuanyuan; Farnoud, Farzad (CoRR, 2020)

Error-correcting Codes for Short Tandem Duplication and Substitution Errors. - Tang, Yuanyuan; Farnoud, Farzad (CoRR, 2020)

Estimation of duplication history under a stochastic model for tandem repeats. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (BMC Bioinform., 2019)

Reconciling Similar Sets of Data. - Gabrys, Ryan; Farnoud, Farzad (IEEE Trans. Commun., 2019)

The Entropy Rate of Some Pólya String Models. - Elishco, Ohad; Hassanzadeh, Farzad Farnoud; Schwartz, Moshe; Bruck, Jehoshua (IEEE Trans. Inf. Theory, 2019)

Finite-Time Behavior of k-mer Frequencies and Waiting Times in Noisy-Duplication Systems. - Lou, Hao; Hassanzadeh, Farzad Farnoud (2019)

Error-correcting Codes for Noisy Duplication Channels. - Tang, Yuanyuan; Hassanzadeh, Farzad Farnoud (2019)

Solving the Maximum Independent Set Problem using Coupled Relaxation Oscillators. - Bashar, Mohammad Khairul; Hrdy, Richard; Mallick, Antik; Hassanzadeh, Farzad Farnoud; Shukla, Nikhil (2019)

Single-Error Detection and Correction for Duplication and Substitution Channels. - Tang, Yuanyuan; Yehezkeally, Yonatan; Schwartz, Moshe; Hassanzadeh, Farzad Farnoud (2019)

Single-Error Detection and Correction for Duplication and Substitution Channels. - Tang, Yuanyuan; Yehezkeally, Yonatan; Schwartz, Moshe; Farnoud, Farzad (CoRR, 2019)

Rank Aggregation via Heterogeneous Thurstone Preference Models. - Jin, Tao; Xu, Pan; Gu, Quanquan; Farnoud, Farzad (CoRR, 2019)

Evolution of N-Gram Frequencies Under Duplication and Substitution Mutations. - Lou, Hao; Schwartz, Moshe; Hassanzadeh, Farzad Farnoud (2018)

The Capacity of Some Pólya String Models. - Elishco, Ohad; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2018)

Reconciling Similar Sets of Data. - Gabrys, Ryan; Farnoud, Farzad (CoRR, 2018)

Evolution of k-mer Frequencies and Entropy in Duplication and Substitution Mutation Systems. - Lou, Hao; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2018)

Computing similarity distances between rankings. - Hassanzadeh, Farzad Farnoud; Milenkovic, Olgica; Puleo, Gregory J.; Su, Lili (Discret. Appl. Math., 2017)

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms. - Jain, Siddharth; Hassanzadeh, Farzad Farnoud; Schwartz, Moshe; Bruck, Jehoshua (IEEE Trans. Inf. Theory, 2017)

Capacity and Expressiveness of Genomic Tandem Duplication. - Jain, Siddharth; Hassanzadeh, Farzad Farnoud; Bruck, Jehoshua (IEEE Trans. Inf. Theory, 2017)

Duplication Distance to the Root for Binary Sequences. - Alon, Noga; Bruck, Jehoshua; Hassanzadeh, Farzad Farnoud; Jain, Siddharth (IEEE Trans. Inf. Theory, 2017)

Reconciling similar sets. - Gabrys, Ryan; Hassanzadeh, Farzad Farnoud (2017)

Noise and uncertainty in string-duplication systems. - Jain, Siddharth; Hassanzadeh, Farzad Farnoud; Schwartz, Moshe; Bruck, Jehoshua (2017)

MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression. - Kim, Minji; Zhang, Xiejia; Ligo, Jonathan G.; Farnoud, Farzad; Veeravalli, Venugopal V.; Milenkovic, Olgica (BMC Bioinform., 2016)

Approximate sorting of data streams with limited storage. - Farnoud, Farzad; Yaakobi, Eitan; Bruck, Jehoshua (J. Comb. Optim., 2016)

Codes Correcting Erasures and Deletions for Rank Modulation. - Gabrys, Ryan; Yaakobi, Eitan; Farnoud, Farzad; Sala, Frederic; Bruck, Jehoshua; Dolecek, Lara (IEEE Trans. Inf. Theory, 2016)

Bounds for Permutation Rate-Distortion. - Hassanzadeh, Farzad Farnoud; Schwartz, Moshe; Bruck, Jehoshua (IEEE Trans. Inf. Theory, 2016)

The Capacity of String-Duplication Systems. - Hassanzadeh, Farzad Farnoud; Schwartz, Moshe; Bruck, Jehoshua (IEEE Trans. Inf. Theory, 2016)

On the duplication distance of binary strings. - Alon, Noga; Bruck, Jehoshua; Farnoud, Farzad; Jain, Siddharth (2016)

The capacity of some Pólya string models. - Elishco, Ohad; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2016)

Duplication-correcting codes for data storage in the DNA of living organisms. - Jain, Siddharth; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2016)

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms. - Jain, Siddharth; Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2016)

Duplication Distance to the Root for Binary Sequences. - Alon, Noga; Bruck, Jehoshua; Farnoud, Farzad; Jain, Siddharth (CoRR, 2016)

HyDRA: gene prioritization via hybrid distance-score rank aggregation. - Kim, Minji; Farnoud, Farzad; Milenkovic, Olgica (Bioinform., 2015)

A stochastic model for genomic interspersed duplication. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2015)

Capacity and expressiveness of genomic tandem duplication. - Jain, Siddharth; Farnoud, Farzad; Bruck, Jehoshua (2015)

Reconciling similar sets of data. - Gabrys, Ryan; Farnoud, Farzad (2015)

Capacity and Expressiveness of Genomic Tandem Duplication. - Jain, Siddharth; Farnoud, Farzad; Bruck, Jehoshua (CoRR, 2015)

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories. - Hassanzadeh, Farzad Farnoud; Milenkovic, Olgica (IEEE J. Sel. Areas Commun., 2014)

An Axiomatic Approach to Constructing Distances for Rank Comparison and Aggregation. - Hassanzadeh, Farzad Farnoud; Milenkovic, Olgica (IEEE Trans. Inf. Theory, 2014)

Approximate Sorting of Data Streams with Limited Storage. - Hassanzadeh, Farzad Farnoud; Yaakobi, Eitan; Bruck, Jehoshua (2014)

Bounds for permutation rate-distortion. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2014)

The capacity of string-duplication systems. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (2014)

Similarity distances between permutations. - Su, Lili; Farnoud, Farzad; Milenkovic, Olgica (2014)

Multipermutation codes in the Ulam metric. - Farnoud, Farzad; Milenkovic, Olgica (2014)

Codes correcting erasures and deletions for rank modulation. - Gabrys, Ryan; Yaakobi, Eitan; Farnoud, Farzad; Bruck, Jehoshua (2014)

Single-deletion-correcting codes over permutations. - Gabrys, Ryan; Yaakobi, Eitan; Farnoud, Farzad; Sala, Frederic; Bruck, Jehoshua; Dolecek, Lara (2014)

Rate-Distortion for Ranking with Incomplete Information. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2014)

The Capacity of String-Replication Systems. - Farnoud, Farzad; Schwartz, Moshe; Bruck, Jehoshua (CoRR, 2014)

Error-Correction in Flash Memories via Codes in the Ulam Metric. - Farnoud, Farzad; Skachek, Vitaly; Milenkovic, Olgica (IEEE Trans. Inf. Theory, 2013)

A general framework for distributed vote aggregation. - Touri, Behrouz; Farnoud, Farzad; Nedic, Angelia; Milenkovic, Olgica (2013)

Gene prioritization via weighted Kendall rank aggregation. - Kim, Minji; Raisali, Fardad; Farnoud, Farzad; Milenkovic, Olgica (2013)

MetaPar: Metagenomic sequence assembly via iterative reclassification. - Kim, Minji; Ligo, Jonathan G.; Emad, Amin; Farnoud, Farzad; Milenkovic, Olgica; Veeravalli, Venugopal V. (2013)

Building consensus via iterative voting. - Hassanzadeh, Farzad Farnoud; Yaakobi, Eitan; Touri, Behrouz; Milenkovic, Olgica; Bruck, Jehoshua (2013)

Weighted rank aggregation via relaxed integer programming. - Raisali, Fardad; Hassanzadeh, Farzad Farnoud; Milenkovic, Olgica (2013)

Aggregating rankings with positional constraints. - Hassanzadeh, Farzad Farnoud; Milenkovic, Olgica (2013)

Computing Similarity Distances Between Rankings. - Su, Lili; Farnoud, Farzad; Milenkovic, Olgica (CoRR, 2013)

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories. - Farnoud, Farzad; Milenkovic, Olgica (CoRR, 2013)

Sorting of Permutations by Cost-Constrained Transpositions. - Farnoud, Farzad; Milenkovic, Olgica (IEEE Trans. Inf. Theory, 2012)

Alternating Markov chains for distribution estimation in the presence of errors. - Farnoud, Farzad; Santhanam, Narayana P.; Milenkovic, Olgica (2012)

Rank modulation for translocation error correction. - Farnoud, Farzad; Skachek, Vitaly; Milenkovic, Olgica (2012)

Alternating Markov Chains for Distribution Estimation in the Presence of Errors - Farnoud, Farzad; Santhanam, Narayana P.; Milenkovic, Olgica (CoRR, 2012)

Rank Modulation for Translocation Error Correction - Farnoud, Farzad; Skachek, Vitaly; Milenkovic, Olgica (CoRR, 2012)

Nonuniform Vote Aggregation Algorithms - Farnoud, Farzad; Touri, Behrouz; Milenkovic, Olgica (CoRR, 2012)

A Novel Distance-Based Approach to Constrained Rank Aggregation - Farnoud, Farzad; Milenkovic, Olgica; Touri, Behrouz (CoRR, 2012)

A General Framework for Distributed Vote Aggregation - Touri, Behrouz; Farnoud, Farzad; Nedic, Angelia; Milenkovic, Olgica (CoRR, 2012)

Decomposing permutations via cost-constrained transpositions. - Farnoud, Farzad; Milenkovic, Olgica (2011)

On the multimessage capacity region for undirected ring networks. - Yazdi, S. M. Sadegh Tabatabaei; Savari, Serap A.; Kramer, Gerhard; Carlson, Kelli; Farnoud, Farzad (IEEE Trans. Inf. Theory, 2010)

A graphical model for computing the minimum cost transposition distance. - Farnoud, Farzad; Chen, Chien-Yu; Milenkovic, Olgica; Kashyap, Navin (2010)

Sorting of Permutations by Cost-Constrained Transpositions - Farnoud, Farzad; Milenkovic, Olgica (CoRR, 2010)

Reliable Broadcast of Safety Messages in Vehicular Ad Hoc Networks. - Farnoud, Farzad; Valaee, Shahrokh (2009)

Small-sample distribution estimation over sticky channels. - Farnoud, Farzad; Milenkovic, Olgica; Santhanam, Narayana P. (2009)

A Multimessage Capacity Region for Undirected Ring Networks. - Yazdi, S. M. Sadegh Tabatabaei; Savari, Serap A.; Farnoud, Farzad; Kramer, Gerhard (2007)