Correcting a Substring Edit Error of Bounded Length - Yuanyuan Tang; Sarvin Motamen; Hao Lou; Kallie Whritenour; Shuche Wang; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Commun., 2025)

Non-Binary Codes for Correcting a Burst of at Most t Deletions - Shuche Wang; Yuanyuan Tang; Jin Sima; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Inf. Theory, 2024)

Variance-aware Regret Bounds for Stochastic Contextual Dueling Bandits - Qiwei Di; Tao Jin; Yue Wu; Heyang Zhao; Farzad Farnoud; Quanquan Gu (The Twelfth International Conference on Learning Representations, ICLR 2024, Vienna, Austria, May 7-11, 2024, 2024)

Borda Regret Minimization for Generalized Linear Dueling Bandits - Yue Wu; Tao Jin; Qiwei Di; Hao Lou; Farzad Farnoud; Quanquan Gu (Forty-first International Conference on Machine Learning, ICML 2024, Vienna, Austria, July 21-27, 2024, 2024)

Asymptotically Optimal Codes Correcting One Substring Edit - L. Yuting; Yuanyuan Tang; Hao Lou; Ryan Gabrys; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2024, Athens, Greece, July 7-12, 2024, 2024)

Low-Redundancy Codes for Correcting Multiple Short-Duplication and Edit Errors - Yuanyuan Tang; Shuche Wang; Hao Lou; Ryan Gabrys; Farzad Farnoud (IEEE Trans. Inf. Theory, 2023)

A Statistical Analysis of Duplication Errors in the Nanopore Sequencing Channel - Sarvin Motamen; Hao Lou; Farzad Farnoud (57th Asilomar Conference on Signals, Systems, and Computers, ACSSC 2023, Pacific Grove, CA, USA, October 29 - Nov. 1, 2023, 2023)

Constrained Code for Data Storage in DNA via Nanopore Sequencing - Kallie Whritenour; Mete Civelek; Farzad Farnoud (57th Asilomar Conference on Signals, Systems, and Computers, ACSSC 2023, Pacific Grove, CA, USA, October 29 - Nov. 1, 2023, 2023)

Linial's Algorithm and Systematic Deletion-Correcting Codes - Yuting Li; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2023, Taipei, Taiwan, June 25-30, 2023, 2023)

Correcting a substring edit error of bounded length - Yuanyuan Tang; Sarvin Motamen; Hao Lou; Kallie Whritenour; Shuche Wang; Ryan Gabrys; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2023, Taipei, Taiwan, June 25-30, 2023, 2023)

Borda Regret Minimization for Generalized Linear Dueling Bandits - Yue Wu; Tao Jin; Hao Lou; Farzad Farnoud; Quanquan Gu (CoRR, 2023)

Variance-Aware Regret Bounds for Stochastic Contextual Dueling Bandits - Qiwei Di; Tao Jin; Yue Wu; Heyang Zhao; Farzad Farnoud; Quanquan Gu (CoRR, 2023)

Error-Correcting Codes for Short Tandem Duplication and Edit Errors - Yuanyuan Tang; Farzad Farnoud (IEEE Trans. Inf. Theory, 2022)

Data Deduplication With Random Substitutions - Hao Lou; Farzad Farnoud (IEEE Trans. Inf. Theory, 2022)

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons - Yue Wu; Tao Jin; Hao Lou; Pan Xu; Farzad Farnoud; Quanquan Gu (International Conference on Artificial Intelligence and Statistics, AISTATS 2022, 28-30 March 2022, Virtual Event, 2022)

Permutation Codes for Correcting a Burst of at Most t Deletions - Shuche Wang; Yuanyuan Tang; Ryan Gabrys; Farzad Farnoud (58th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2022, Monticello, IL, USA, September 27-30, 2022, 2022)

Universal Compression of Large Alphabets with Constrained Compressors - Hao Lou; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2022, Espoo, Finland, June 26 - July 1, 2022, 2022)

Correcting multiple short duplication and substitution errors - Yuanyuan Tang; Shuche Wang; Ryan Gabrys; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2022, Espoo, Finland, June 26 - July 1, 2022, 2022)

Active Ranking without Strong Stochastic Transitivity - Hao Lou; Tao Jin; Yue Wu; Pan Xu; Quanquan Gu; Farzad Farnoud (Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans, LA, USA, November 28 - December 9, 2022, 2022)

Low-redundancy codes for correcting multiple short-duplication and edit errors - Yuanyuan Tang; Shuche Wang; Hao Lou; Ryan Gabrys; Farzad Farnoud (CoRR, 2022)

Non-binary Codes for Correcting a Burst of at Most t Deletions - Shuche Wang; Yuanyuan Tang; Jin Sima; Ryan Gabrys; Farzad Farnoud (CoRR, 2022)

Error-Correcting Codes for Noisy Duplication Channels - Yuanyuan Tang; Farzad Farnoud (IEEE Trans. Inf. Theory, 2021)

Error-correcting codes for short tandem duplications and at most p substitutions - Yuanyuan Tang; Hao Lou; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2021, Melbourne, Australia, July 12-20, 2021, 2021)

Non-binary Codes for Correcting a Burst of at Most 2 Deletions - Shuche Wang; Jin Sima; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2021, Melbourne, Australia, July 12-20, 2021, 2021)

Asymptotic Analysis of Data Deduplication with a Constant Number of Substitutions - Hao Lou; Farzad Farnoud Hassanzadeh (IEEE International Symposium on Information Theory, ISIT 2021, Melbourne, Australia, July 12-20, 2021, 2021)

Correcting deletion errors in DNA data storage with enzymatic synthesis - Yuanyuan Tang; Farzad Farnoud (IEEE Information Theory Workshop, ITW 2021, Kanazawa, Japan, October 17-21, 2021, 2021)

Data Deduplication with Random Substitutions - Hao Lou; Farzad Farnoud (CoRR, 2021)

Adaptive Sampling for Heterogeneous Rank Aggregation from Noisy Pairwise Comparisons - Yue Wu; Tao Jin; Hao Lou; Pan Xu; Farzad Farnoud; Quanquan Gu (CoRR, 2021)

Evolution of k -Mer Frequencies and Entropy in Duplication and Substitution Mutation Systems - Hao Lou; Moshe Schwartz; Jehoshua Bruck; Farzad Farnoud (IEEE Trans. Inf. Theory, 2020)

Single-Error Detection and Correction for Duplication and Substitution Channels - Yuanyuan Tang; Yonatan Yehezkeally; Moshe Schwartz; Farzad Farnoud (IEEE Trans. Inf. Theory, 2020)

Rank Aggregation via Heterogeneous Thurstone Preference Models - Tao Jin; Pan Xu; Quanquan Gu; Farzad Farnoud (The Thirty-Fourth AAAI Conference on Artificial Intelligence, AAAI 2020, The Thirty-Second Innovative Applications of Artificial Intelligence Conference, IAAI 2020, The Tenth AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2020, New York, NY, USA, February 7-12, 2020, 2020)

Efficient Search of Circular Repeats and MicroDNA Reintegration in DNA Sequences - Yiming Wang; Hao Lou; Pankaj Kumar; Anindya Dutta; Farzad Farnoud (20th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2020, Cincinnati, OH, USA, October 26-28, 2020, 2020)

Coding for Optimized Writing Rate in DNA Storage - Siddharth Jain; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (IEEE International Symposium on Information Theory, ISIT 2020, Los Angeles, CA, USA, June 21-26, 2020, 2020)

Error-correcting Codes for Short Tandem Duplication and Substitution Errors - Yuanyuan Tang; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2020, Los Angeles, CA, USA, June 21-26, 2020, 2020)

Data Deduplication with Random Substitutions - Hao Lou; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2020, Los Angeles, CA, USA, June 21-26, 2020, 2020)

Coding for Optimized Writing Rate in DNA Storage - Siddharth Jain; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2020)

Error-correcting Codes for Noisy Duplication Channels - Yuanyuan Tang; Farzad Farnoud (CoRR, 2020)

Error-correcting Codes for Short Tandem Duplication and Substitution Errors - Yuanyuan Tang; Farzad Farnoud (CoRR, 2020)

Estimation of duplication history under a stochastic model for tandem repeats - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (BMC Bioinform., 2019)

Reconciling Similar Sets of Data - Ryan Gabrys; Farzad Farnoud (IEEE Trans. Commun., 2019)

The Entropy Rate of Some Pólya String Models - Ohad Elishco; Farzad Farnoud Hassanzadeh; Moshe Schwartz; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2019)

Finite-Time Behavior of k-mer Frequencies and Waiting Times in Noisy-Duplication Systems - Hao Lou; Farzad Farnoud Hassanzadeh (53rd Asilomar Conference on Signals, Systems, and Computers, ACSCC 2019, Pacific Grove, CA, USA, November 3-6, 2019, 2019)

Error-correcting Codes for Noisy Duplication Channels - Yuanyuan Tang; Farzad Farnoud Hassanzadeh (57th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2019, Monticello, IL, USA, September 24-27, 2019, 2019)

Solving the Maximum Independent Set Problem using Coupled Relaxation Oscillators - Mohammad Khairul Bashar; Richard Hrdy; Antik Mallick; Farzad Farnoud Hassanzadeh; Nikhil Shukla (Device Research Conference, DRC 2019, Ann Arbor, MI, USA, June 23-26, 2019, 2019)

Single-Error Detection and Correction for Duplication and Substitution Channels - Yuanyuan Tang; Yonatan Yehezkeally; Moshe Schwartz; Farzad Farnoud Hassanzadeh (IEEE International Symposium on Information Theory, ISIT 2019, Paris, France, July 7-12, 2019, 2019)

Single-Error Detection and Correction for Duplication and Substitution Channels - Yuanyuan Tang; Yonatan Yehezkeally; Moshe Schwartz; Farzad Farnoud (CoRR, 2019)

Rank Aggregation via Heterogeneous Thurstone Preference Models - Tao Jin; Pan Xu; Quanquan Gu; Farzad Farnoud (CoRR, 2019)

Evolution of N-Gram Frequencies Under Duplication and Substitution Mutations - Hao Lou; Moshe Schwartz; Farzad Farnoud Hassanzadeh (2018 IEEE International Symposium on Information Theory, ISIT 2018, Vail, CO, USA, June 17-22, 2018, 2018)

The Capacity of Some Pólya String Models - Ohad Elishco; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2018)

Reconciling Similar Sets of Data - Ryan Gabrys; Farzad Farnoud (CoRR, 2018)

Evolution of k-mer Frequencies and Entropy in Duplication and Substitution Mutation Systems - Hao Lou; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2018)

Computing similarity distances between rankings - Farzad Farnoud Hassanzadeh; Olgica Milenkovic; Gregory J. Puleo; Lili Su (Discret. Appl. Math., 2017)

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms - Siddharth Jain; Farzad Farnoud Hassanzadeh; Moshe Schwartz; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2017)

Capacity and Expressiveness of Genomic Tandem Duplication - Siddharth Jain; Farzad Farnoud Hassanzadeh; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2017)

Duplication Distance to the Root for Binary Sequences - Noga Alon; Jehoshua Bruck; Farzad Farnoud Hassanzadeh; Siddharth Jain (IEEE Trans. Inf. Theory, 2017)

Reconciling similar sets - Ryan Gabrys; Farzad Farnoud Hassanzadeh (55th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2017, Monticello, IL, USA, October 3-6, 2017, 2017)

Noise and uncertainty in string-duplication systems - Siddharth Jain; Farzad Farnoud Hassanzadeh; Moshe Schwartz; Jehoshua Bruck (2017 IEEE International Symposium on Information Theory, ISIT 2017, Aachen, Germany, June 25-30, 2017, 2017)

MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression - Minji Kim; Xiejia Zhang; Jonathan G. Ligo; Farzad Farnoud; Venugopal V. Veeravalli; Olgica Milenkovic (BMC Bioinform., 2016)

Approximate sorting of data streams with limited storage - Farzad Farnoud; Eitan Yaakobi; Jehoshua Bruck (J. Comb. Optim., 2016)

Codes Correcting Erasures and Deletions for Rank Modulation - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Frederic Sala; Jehoshua Bruck; Lara Dolecek (IEEE Trans. Inf. Theory, 2016)

Bounds for Permutation Rate-Distortion - Farzad Farnoud Hassanzadeh; Moshe Schwartz; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2016)

The Capacity of String-Duplication Systems - Farzad Farnoud Hassanzadeh; Moshe Schwartz; Jehoshua Bruck (IEEE Trans. Inf. Theory, 2016)

On the duplication distance of binary strings - Noga Alon; Jehoshua Bruck; Farzad Farnoud; Siddharth Jain (IEEE International Symposium on Information Theory, ISIT 2016, Barcelona, Spain, July 10-15, 2016, 2016)

The capacity of some Pólya string models - Ohad Elishco; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (IEEE International Symposium on Information Theory, ISIT 2016, Barcelona, Spain, July 10-15, 2016, 2016)

Duplication-correcting codes for data storage in the DNA of living organisms - Siddharth Jain; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (IEEE International Symposium on Information Theory, ISIT 2016, Barcelona, Spain, July 10-15, 2016, 2016)

Duplication-Correcting Codes for Data Storage in the DNA of Living Organisms - Siddharth Jain; Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2016)

Duplication Distance to the Root for Binary Sequences - Noga Alon; Jehoshua Bruck; Farzad Farnoud; Siddharth Jain (CoRR, 2016)

HyDRA: gene prioritization via hybrid distance-score rank aggregation - Minji Kim; Farzad Farnoud; Olgica Milenkovic (Bioinform., 2015)

A stochastic model for genomic interspersed duplication - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (IEEE International Symposium on Information Theory, ISIT 2015, Hong Kong, China, June 14-19, 2015, 2015)

Capacity and expressiveness of genomic tandem duplication - Siddharth Jain; Farzad Farnoud; Jehoshua Bruck (IEEE International Symposium on Information Theory, ISIT 2015, Hong Kong, China, June 14-19, 2015, 2015)

Reconciling similar sets of data - Ryan Gabrys; Farzad Farnoud (IEEE International Symposium on Information Theory, ISIT 2015, Hong Kong, China, June 14-19, 2015, 2015)

Capacity and Expressiveness of Genomic Tandem Duplication - Siddharth Jain; Farzad Farnoud; Jehoshua Bruck (CoRR, 2015)

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (IEEE J. Sel. Areas Commun., 2014)

An Axiomatic Approach to Constructing Distances for Rank Comparison and Aggregation - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2014)

Approximate Sorting of Data Streams with Limited Storage - Farzad Farnoud Hassanzadeh; Eitan Yaakobi; Jehoshua Bruck (Computing and Combinatorics - 20th International Conference, COCOON 2014, Atlanta, GA, USA, August 4-6, 2014. Proceedings, 2014)

Bounds for permutation rate-distortion - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

The capacity of string-duplication systems - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Similarity distances between permutations - Lili Su; Farzad Farnoud; Olgica Milenkovic (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Multipermutation codes in the Ulam metric - Farzad Farnoud; Olgica Milenkovic (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Codes correcting erasures and deletions for rank modulation - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Jehoshua Bruck (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Single-deletion-correcting codes over permutations - Ryan Gabrys; Eitan Yaakobi; Farzad Farnoud; Frederic Sala; Jehoshua Bruck; Lara Dolecek (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Rate-Distortion for Ranking with Incomplete Information - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2014)

The Capacity of String-Replication Systems - Farzad Farnoud; Moshe Schwartz; Jehoshua Bruck (CoRR, 2014)

Error-Correction in Flash Memories via Codes in the Ulam Metric - Farzad Farnoud; Vitaly Skachek; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2013)

A general framework for distributed vote aggregation - Behrouz Touri; Farzad Farnoud; Angelia Nedic; Olgica Milenkovic (American Control Conference, ACC 2013, Washington, DC, USA, June 17-19, 2013, 2013)

Gene prioritization via weighted Kendall rank aggregation - Minji Kim; Fardad Raisali; Farzad Farnoud; Olgica Milenkovic (5th IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing, CAMSAP 2013, St. Martin, France, December 15-18, 2013, 2013)

MetaPar: Metagenomic sequence assembly via iterative reclassification - Minji Kim; Jonathan G. Ligo; Amin Emad; Farzad Farnoud; Olgica Milenkovic; Venugopal V. Veeravalli (IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013, Austin, TX, USA, December 3-5, 2013, 2013)

Building consensus via iterative voting - Farzad Farnoud Hassanzadeh; Eitan Yaakobi; Behrouz Touri; Olgica Milenkovic; Jehoshua Bruck (Proceedings of the 2013 IEEE International Symposium on Information Theory, Istanbul, Turkey, July 7-12, 2013, 2013)

Weighted rank aggregation via relaxed integer programming - Fardad Raisali; Farzad Farnoud Hassanzadeh; Olgica Milenkovic (Proceedings of the 2013 IEEE International Symposium on Information Theory, Istanbul, Turkey, July 7-12, 2013, 2013)

Aggregating rankings with positional constraints - Farzad Farnoud Hassanzadeh; Olgica Milenkovic (2013 IEEE Information Theory Workshop, ITW 2013, Sevilla, Spain, September 9-13, 2013, 2013)

Computing Similarity Distances Between Rankings - Lili Su; Farzad Farnoud; Olgica Milenkovic (CoRR, 2013)

Multipermutation Codes in the Ulam Metric for Nonvolatile Memories - Farzad Farnoud; Olgica Milenkovic (CoRR, 2013)

Sorting of Permutations by Cost-Constrained Transpositions - Farzad Farnoud; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2012)

Alternating Markov chains for distribution estimation in the presence of errors - Farzad Farnoud; Narayana P. Santhanam; Olgica Milenkovic (Proceedings of the 2012 IEEE International Symposium on Information Theory, ISIT 2012, Cambridge, MA, USA, July 1-6, 2012, 2012)

Rank modulation for translocation error correction - Farzad Farnoud; Vitaly Skachek; Olgica Milenkovic (Proceedings of the 2012 IEEE International Symposium on Information Theory, ISIT 2012, Cambridge, MA, USA, July 1-6, 2012, 2012)

Alternating Markov Chains for Distribution Estimation in the Presence of Errors - Farzad Farnoud; Narayana P. Santhanam; Olgica Milenkovic (CoRR, 2012)

Rank Modulation for Translocation Error Correction - Farzad Farnoud; Vitaly Skachek; Olgica Milenkovic (CoRR, 2012)

Nonuniform Vote Aggregation Algorithms - Farzad Farnoud; Behrouz Touri; Olgica Milenkovic (CoRR, 2012)

A Novel Distance-Based Approach to Constrained Rank Aggregation - Farzad Farnoud; Olgica Milenkovic; Behrouz Touri (CoRR, 2012)

A General Framework for Distributed Vote Aggregation - Behrouz Touri; Farzad Farnoud; Angelia Nedic; Olgica Milenkovic (CoRR, 2012)

Decomposing permutations via cost-constrained transpositions - Farzad Farnoud; Olgica Milenkovic (2011 IEEE International Symposium on Information Theory Proceedings, ISIT 2011, St. Petersburg, Russia, July 31 - August 5, 2011, 2011)

On the multimessage capacity region for undirected ring networks - S. M. Sadegh Tabatabaei Yazdi; Serap A. Savari; Gerhard Kramer; Kelli Carlson; Farzad Farnoud (IEEE Trans. Inf. Theory, 2010)

A graphical model for computing the minimum cost transposition distance - Farzad Farnoud; Chien-Yu Chen; Olgica Milenkovic; Navin Kashyap (2010 IEEE Information Theory Workshop, ITW 2010, Dublin, Ireland, August 30 - September 3, 2010, 2010)

Sorting of Permutations by Cost-Constrained Transpositions - Farzad Farnoud; Olgica Milenkovic (CoRR, 2010)

Reliable Broadcast of Safety Messages in Vehicular Ad Hoc Networks - Farzad Farnoud; Shahrokh Valaee (INFOCOM 2009. 28th IEEE International Conference on Computer Communications, Joint Conference of the IEEE Computer and Communications Societies, 19-25 April 2009, Rio de Janeiro, Brazil, 2009)

Small-sample distribution estimation over sticky channels - Farzad Farnoud; Olgica Milenkovic; Narayana P. Santhanam (IEEE International Symposium on Information Theory, ISIT 2009, June 28 - July 3, 2009, Seoul, Korea, Proceedings, 2009)

A Multimessage Capacity Region for Undirected Ring Networks - S. M. Sadegh Tabatabaei Yazdi; Serap A. Savari; Farzad Farnoud; Gerhard Kramer (IEEE International Symposium on Information Theory, ISIT 2007, Nice, France, June 24-29, 2007, 2007)