Automatic quality control of brain 3D FLAIR MRIs for a clinical data warehouse. - Loizillon, Sophie; Bottani, Simona; Maire, Aurélien; Ströer, Sebastian; Chougar, Lydia; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (Medical Image Anal., 2025)

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI. - Bottani, Simona; Thibeau-Sutre, Elina; Maire, Aurélien; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (BMC Medical Imaging, 2024)

Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data. - Loizillon, Sophie; Bottani, Simona; Maire, Aurélien; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (Medical Image Anal., 2024)

Detecting Brain Anomalies in Clinical Routine with the β-VAE: Feasibility Study on Age-Related White Matter Hyperintensities. - Loizillon, Sophie; Jacob, Yannick; Maire, Aurélien; Dormont, Didier; Colliot, Olivier; Burgos, Ninon; Group, Apprimage Study (2024)

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation. - Loizillon, Sophie; Bottani, Simona; Mabille, Stéphane; Jacob, Yannick; Maire, Aurélien; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (CoRR, 2024)

SMILE-UHURA Challenge - Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms. - Chatterjee, Soumick; Mattern, Hendrik; Dörner, Marc; Sciarra, Alessandro; Dubost, Florian; Schnurre, Hannes; Khatun, Rupali; Yu, Chun-Chih; Hsieh, Tsung-Lin; Tsai, Yi-Shan; Fang, Yi-Zeng; Yang, Yung-Ching; et al. (CoRR, 2024)

Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse. - Bottani, Simona; Burgos, Ninon; Maire, Aurélien; Saracino, Dario; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier (Medical Image Anal., 2023)

Semi-supervised Domain Adaptation for Automatic Quality Control of FLAIR MRIs in a Clinical Data Warehouse. - Loizillon, Sophie; Colliot, Olivier; Chougar, Lydia; Ströer, Sebastian; Jacob, Yannick; Maire, Aurélien; Dormont, Didier; Burgos, Ninon (2023)

Introducing soft topology constraints in deep learning-based segmentation using projected pooling loss. - Fu, Guanghui; Jurdi, Rosana El; Chougar, Lydia; Dormont, Didier; Valabrègue, Romain; Lehéricy, Stéphane; Colliot, Olivier (2023)

Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI. - Loizillon, Sophie; Bottani, Simona; Maire, Aurélien; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (2023)

Frequency Disentangled Learning for Segmentation of Midbrain Structures from Quantitative Susceptibility Mapping Data. - Fu, Guanghui; Jimenez, Gabriel; Loizillon, Sophie; Chougar, Lydia; Dormont, Didier; Valabrègue, Romain; Burgos, Ninon; Lehéricy, Stéphane; Racoceanu, Daniel; Colliot, Olivier (CoRR, 2023)

ClinicaDL: An open-source deep learning software for reproducible neuroimaging processing. - Thibeau-Sutre, Elina; Diaz-Melo, Mauricio; Hassanaly, Ravi; Routier, Alexandre; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (Comput. Methods Programs Biomed., 2022)

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse. - Bottani, Simona; Burgos, Ninon; Maire, Aurélien; Wild, Adam; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier (Medical Image Anal., 2022)

MRI Field Strength Predicts Alzheimer's Disease: a Case Example of Bias in the ADNI Data Set. - Thibeau-Sutre, Elina; Couvy-Duchesne, Baptiste; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (2022)

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models. - Bottani, Simona; Thibeau-Sutre, Elina; Maire, Aurélien; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier; Burgos, Ninon (2022)

Fourier Disentangled Multimodal Prior Knowledge Fusion for Red Nucleus Segmentation in Brain MRI. - Fu, Guanghui; Jimenez, Gabriel; Loizillon, Sophie; Jurdi, Rosana El; Chougar, Lydia; Dormont, Didier; Valabrègue, Romain; Burgos, Ninon; Lehéricy, Stéphane; Racoceanu, Daniel; Colliot, Olivier (CoRR, 2022)

Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review. - Ansart, Manon; Epelbaum, Stéphane; Bassignana, Giulia; Bône, Alexandre; Bottani, Simona; Cattai, Tiziana; Couronné, Raphaël; Faouzi, Johann; Koval, Igor; Louis, Maxime; Thibeau-Sutre, Elina; Wen, Junhao; et al. (Medical Image Anal., 2021)

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse. - Bottani, Simona; Burgos, Ninon; Maire, Aurélien; Wild, Adam; Ströer, Sebastian; Dormont, Didier; Colliot, Olivier (CoRR, 2021)

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation. - Wen, Junhao; Thibeau-Sutre, Elina; Diaz-Melo, Mauricio; Samper-González, Jorge; Routier, Alexandre; Bottani, Simona; Dormont, Didier; Durrleman, Stanley; Burgos, Ninon; Colliot, Olivier (Medical Image Anal., 2020)

Visualization approach to assess the robustness of neural networks for medical image classification. - Thibeau-Sutre, Elina; Colliot, Olivier; Dormont, Didier; Burgos, Ninon (2020)

Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort. - Morin, Alexandre; Samper-González, Jorge; Bertrand, Anne; Ströer, Sebastian; Dormont, Didier; Mendes, Aline; Coupé, Pierrick; Ahdidan, Jamila; Lévy, Marcel; Samri, Dalila; Hampel, Harald; Dubois, Bruno; et al. (CoRR, 2020)

Visualization approach to assess the robustness of neural networks for medical image classification. - Thibeau-Sutre, Elina; Colliot, Olivier; Dormont, Didier; Burgos, Ninon (CoRR, 2019)

Prediction of Amyloidosis from Neuropsychological and MRI Data for Cost Effective Inclusion of Pre-symptomatic Subjects in Clinical Trials. - Ansart, Manon; Epelbaum, Stéphane; Gagliardi, Geoffroy; Colliot, Olivier; Dormont, Didier; Dubois, Bruno; Hampel, Harald; Durrleman, Stanley (2017)

2D harmonic filtering of MR phase images in multicenter clinical setting: Toward a magnetic signature of cerebral microbleeds. - Kaaouana, Takoua; Rochefort, Ludovic de; Samaille, Thomas; Thiery, Nathalie; Dufouil, Carole; Delmaire, Christine; Dormont, Didier; Chupin, Marie (NeuroImage, 2015)

Phase contrast MRI for discriminating brain microbleed in a multicentre clinical study. - Kaaouana, Takoua; Rochefort, Ludovic de; Samaille, Thomas; Thierry, Nathalie; Dufouil, Carole; Delmaire, Christine; Dormont, Didier; Chupin, Marie (2014)

Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability. - Samaille, Thomas; Colliot, Olivier; Cuingnet, Rémi; Jouvent, Eric; Chabriat, Hugues; Dormont, Didier; Chupin, Marie (2012)

Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome. - Cuingnet, Rémi; Rosso, Charlotte; Chupin, Marie; Lehéricy, Stéphane; Dormont, Didier; Benali, Habib; Samson, Yves; Colliot, Olivier (Medical Image Anal., 2011)

Automatic segmentation of age-related white matter changes on flair images: Method and multicentre validation. - Samaille, Thomas; Colliot, Olivier; Dormont, Didier; Chupin, Marie (2011)

Hommage à Line Garnero. La pluridisciplinarité au cœur. - Baillet, Sylvain; Brunol, Jean; Chavel, Pierre; Colliot, Olivier; Cuniot-Ponsard, Mireille; Dormont, Didier; Lalanne, Philippe; Martinerie, Jacques; Renault, Bernard; Tallon-Baudry, Catherine; Zalc, Bernard (Traitement du Signal, 2010)

Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome. - Cuingnet, Rémi; Rosso, Charlotte; Lehéricy, Stéphane; Dormont, Didier; Benali, Habib; Samson, Yves; Colliot, Olivier (2010)

Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs Using Confidence-Based Block-Matching. - Bhattacharjee, Manik; Pitiot, Alain; Roche, Alexis; Dormont, Didier; Bardinet, Éric (2008)

A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. - Yelnik, Jérôme; Bardinet, Éric; Dormont, Didier; Malandain, Grégoire; Ourselin, Sébastien; Tandé, Dominique; Karachi, Carine; Ayache, Nicholas; Cornu, Philippe; Agid, Yves (NeuroImage, 2007)

Differentiation of sCJD and vCJD forms by automated analysis of basal ganglia intensity distribution in multisequence MRI of the brain-definition and evaluation of new MRI-based ratios. - Linguraru, Marius George; Ayache, Nicholas; Bardinet, Éric; Ballester, Miguel Ángel González; Galanaud, Damien; Haïk, Stéphane; Faucheux, Baptiste; Hauw, J.-J.; Cozzone, Patrick; Dormont, Didier; Brandel, Jean-Philippe (IEEE Trans. Medical Imaging, 2006)

Diffusion tensor imaging in medial temporal lobe epilepsy with hippocampal sclerosis. - Thivard, Lionel; Lehéricy, Stéphane; Krainik, Alexandre; Adam, Claude; Dormont, Didier; Chiras, Jacques; Baulac, Michel; Dupont, Sophie (NeuroImage, 2005)

Retrospective Cross-Evaluation of an Histological and Deformable 3D Atlas of the Basal Ganglia on Series of Parkinsonian Patients Treated by Deep Brain Stimulation. - Bardinet, Éric; Dormont, Didier; Malandain, Grégoire; Bhattacharjee, Manik; Pidoux, Bernard; Saleh, Christian; Cornu, Philippe; Ayache, Nicholas; Agid, Yves; Yelnik, Jérôme (2005)

New Ratios for the Detection and Classification of CJD in Multisequence MRI of the Brain. - Linguraru, Marius George; Ayache, Nicholas; Ballester, Miguel Ángel González; Bardinet, Éric; Galanaud, Damien; Haïk, Stéphane; Faucheux, Baptiste; Cozzone, Patrick; Dormont, Didier; Brandel, Jean-Philippe (2005)

Iconic feature based nonrigid registration: the PASHA algorithm. - Cachier, Pascal; Bardinet, Éric; Dormont, Didier; Pennec, Xavier; Ayache, Nicholas (Comput. Vis. Image Underst., 2003)

Patient-Specific Biomechanical Model of the Brain: Application to Parkinson's Disease Procedure. - Clatz, Olivier; Delingette, Hervé; Bardinet, Éric; Dormont, Didier; Ayache, Nicholas (2003)

A Posteriori Validation of Pre-operative Planning in Functional Neurosurgery by Quantification of Brain Pneumocephalus. - Bardinet, Éric; Cathier, Pascal; Roche, Alexis; Ayache, Nicholas; Dormont, Didier (2002)

Co-registration of Histological, Optical and MR Data of the Human Brain. - Bardinet, Éric; Ourselin, Sébastien; Dormont, Didier; Malandain, Grégoire; Tandé, Dominique; Parain, K.; Ayache, Nicholas; Yelnik, Jérôme (2002)

Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia. - Ourselin, Sébastien; Bardinet, Éric; Dormont, Didier; Malandain, Grégoire; Roche, Alexis; Ayache, Nicholas; Tandé, Dominique; Parain, K.; Yelnik, Jérôme (2001)