Automatic quality control of brain 3D FLAIR MRIs for a clinical data warehouse - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Lydia Chougar; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Image Anal., 2025)

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (BMC Medical Imaging, 2024)

Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Image Anal., 2024)

Detecting Brain Anomalies in Clinical Routine with the \(β\)-VAE: Feasibility Study on Age-Related White Matter Hyperintensities - Sophie Loizillon; Yannick Jacob; Aurélien Maire; Didier Dormont; Olivier Colliot; Ninon Burgos; Apprimage Study Group (Medical Imaging with Deep Learning, 3-5 July 2024, Paris, France, 2024)

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation - Sophie Loizillon; Simona Bottani; Stéphane Mabille; Yannick Jacob; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (CoRR, 2024)

SMILE-UHURA Challenge - Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms - Soumick Chatterjee; Hendrik Mattern; Marc Dörner; Alessandro Sciarra; Florian Dubost; Hannes Schnurre; Rupali Khatun; Chun-Chih Yu; Tsung-Lin Hsieh; Yi-Shan Tsai; Yi-Zeng Fang; Yung-Ching Yang; et al. (CoRR, 2024)

Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse - Simona Bottani; Ninon Burgos; Aurélien Maire; Dario Saracino; Sebastian Ströer; Didier Dormont; Olivier Colliot (Medical Image Anal., 2023)

Semi-supervised Domain Adaptation for Automatic Quality Control of FLAIR MRIs in a Clinical Data Warehouse - Sophie Loizillon; Olivier Colliot; Lydia Chougar; Sebastian Ströer; Yannick Jacob; Aurélien Maire; Didier Dormont; Ninon Burgos (Domain Adaptation and Representation Transfer - 5th MICCAI Workshop, DART 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 12, 2023, Proceedings, 2023)

Introducing soft topology constraints in deep learning-based segmentation using projected pooling loss - Guanghui Fu; Rosana El Jurdi; Lydia Chougar; Didier Dormont; Romain Valabrègue; Stéphane Lehéricy; Olivier Colliot (Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023, 2023)

Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023, 2023)

Frequency Disentangled Learning for Segmentation of Midbrain Structures from Quantitative Susceptibility Mapping Data - Guanghui Fu; Gabriel Jimenez; Sophie Loizillon; Lydia Chougar; Didier Dormont; Romain Valabrègue; Ninon Burgos; Stéphane Lehéricy; Daniel Racoceanu; Olivier Colliot (CoRR, 2023)

ClinicaDL: An open-source deep learning software for reproducible neuroimaging processing - Elina Thibeau-Sutre; Mauricio Diaz-Melo; Ravi Hassanaly; Alexandre Routier; Didier Dormont; Olivier Colliot; Ninon Burgos (Comput. Methods Programs Biomed., 2022)

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse - Simona Bottani; Ninon Burgos; Aurélien Maire; Adam Wild; Sebastian Ströer; Didier Dormont; Olivier Colliot (Medical Image Anal., 2022)

MRI Field Strength Predicts Alzheimer's Disease: a Case Example of Bias in the ADNI Data Set - Elina Thibeau-Sutre; Baptiste Couvy-Duchesne; Didier Dormont; Olivier Colliot; Ninon Burgos (19th IEEE International Symposium on Biomedical Imaging, ISBI 2022, Kolkata, India, March 28-31, 2022, 2022)

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Imaging 2022: Image Processing, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022, 2022)

Fourier Disentangled Multimodal Prior Knowledge Fusion for Red Nucleus Segmentation in Brain MRI - Guanghui Fu; Gabriel Jimenez; Sophie Loizillon; Rosana El Jurdi; Lydia Chougar; Didier Dormont; Romain Valabrègue; Ninon Burgos; Stéphane Lehéricy; Daniel Racoceanu; Olivier Colliot (CoRR, 2022)

Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review - Manon Ansart; Stéphane Epelbaum; Giulia Bassignana; Alexandre Bône; Simona Bottani; Tiziana Cattai; Raphaël Couronné; Johann Faouzi; Igor Koval; Maxime Louis; Elina Thibeau-Sutre; Junhao Wen; et al. (Medical Image Anal., 2021)

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse - Simona Bottani; Ninon Burgos; Aurélien Maire; Adam Wild; Sebastian Ströer; Didier Dormont; Olivier Colliot (CoRR, 2021)

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation - Junhao Wen; Elina Thibeau-Sutre; Mauricio Diaz-Melo; Jorge Samper-González; Alexandre Routier; Simona Bottani; Didier Dormont; Stanley Durrleman; Ninon Burgos; Olivier Colliot (Medical Image Anal., 2020)

Visualization approach to assess the robustness of neural networks for medical image classification - Elina Thibeau-Sutre; Olivier Colliot; Didier Dormont; Ninon Burgos (Medical Imaging 2020: Image Processing, Houston, TX, USA, February 15-20, 2020, 2020)

Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort - Alexandre Morin; Jorge Samper-González; Anne Bertrand; Sebastian Ströer; Didier Dormont; Aline Mendes; Pierrick Coupé; Jamila Ahdidan; Marcel Lévy; Dalila Samri; Harald Hampel; Bruno Dubois; et al. (CoRR, 2020)

Visualization approach to assess the robustness of neural networks for medical image classification - Elina Thibeau-Sutre; Olivier Colliot; Didier Dormont; Ninon Burgos (CoRR, 2019)

Prediction of Amyloidosis from Neuropsychological and MRI Data for Cost Effective Inclusion of Pre-symptomatic Subjects in Clinical Trials - Manon Ansart; Stéphane Epelbaum; Geoffroy Gagliardi; Olivier Colliot; Didier Dormont; Bruno Dubois; Harald Hampel; Stanley Durrleman (Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support - Third International Workshop, DLMIA 2017, and 7th International Workshop, ML-CDS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings, 2017)

2D harmonic filtering of MR phase images in multicenter clinical setting: Toward a magnetic signature of cerebral microbleeds - Takoua Kaaouana; Ludovic de Rochefort; Thomas Samaille; Nathalie Thiery; Carole Dufouil; Christine Delmaire; Didier Dormont; Marie Chupin (NeuroImage, 2015)

Phase contrast MRI for discriminating brain microbleed in a multicentre clinical study - Takoua Kaaouana; Ludovic de Rochefort; Thomas Samaille; Nathalie Thierry; Carole Dufouil; Christine Delmaire; Didier Dormont; Marie Chupin (2014 1st International Conference on Advanced Technologies for Signal and Image Processing (ATSIP), Sousse, Tunisia, March 17-19, 2014, 2014)

Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability - Thomas Samaille; Olivier Colliot; Rémi Cuingnet; Eric Jouvent; Hugues Chabriat; Didier Dormont; Marie Chupin (Medical Imaging 2012: Image Processing, San Diego, California, USA, February 4, 2012, 2012)

Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome - Rémi Cuingnet; Charlotte Rosso; Marie Chupin; Stéphane Lehéricy; Didier Dormont; Habib Benali; Yves Samson; Olivier Colliot (Medical Image Anal., 2011)

Automatic segmentation of age-related white matter changes on flair images: Method and multicentre validation - Thomas Samaille; Olivier Colliot; Didier Dormont; Marie Chupin (Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2011, March 30 - April 2, 2011, Chicago, Illinois, USA, 2011)

Hommage à Line Garnero. La pluridisciplinarité au cœur - Sylvain Baillet; Jean Brunol; Pierre Chavel; Olivier Colliot; Mireille Cuniot-Ponsard; Didier Dormont; Philippe Lalanne; Jacques Martinerie; Bernard Renault; Catherine Tallon-Baudry; Bernard Zalc (Traitement du Signal, 2010)

Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome - Rémi Cuingnet; Charlotte Rosso; Stéphane Lehéricy; Didier Dormont; Habib Benali; Yves Samson; Olivier Colliot (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I, 2010)

Anatomy-Preserving Nonlinear Registration of Deep Brain ROIs Using Confidence-Based Block-Matching - Manik Bhattacharjee; Alain Pitiot; Alexis Roche; Didier Dormont; Éric Bardinet (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part II, 2008)

A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data - Jérôme Yelnik; Éric Bardinet; Didier Dormont; Grégoire Malandain; Sébastien Ourselin; Dominique Tandé; Carine Karachi; Nicholas Ayache; Philippe Cornu; Yves Agid (NeuroImage, 2007)

Differentiation of sCJD and vCJD forms by automated analysis of basal ganglia intensity distribution in multisequence MRI of the brain-definition and evaluation of new MRI-based ratios - Marius George Linguraru; Nicholas Ayache; Éric Bardinet; Miguel Ángel González Ballester; Damien Galanaud; Stéphane Haïk; Baptiste Faucheux; J.-J. Hauw; Patrick Cozzone; Didier Dormont; Jean-Philippe Brandel (IEEE Trans. Medical Imaging, 2006)

Diffusion tensor imaging in medial temporal lobe epilepsy with hippocampal sclerosis - Lionel Thivard; Stéphane Lehéricy; Alexandre Krainik; Claude Adam; Didier Dormont; Jacques Chiras; Michel Baulac; Sophie Dupont (NeuroImage, 2005)

Retrospective Cross-Evaluation of an Histological and Deformable 3D Atlas of the Basal Ganglia on Series of Parkinsonian Patients Treated by Deep Brain Stimulation - Éric Bardinet; Didier Dormont; Grégoire Malandain; Manik Bhattacharjee; Bernard Pidoux; Christian Saleh; Philippe Cornu; Nicholas Ayache; Yves Agid; Jérôme Yelnik (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part II, 2005)

New Ratios for the Detection and Classification of CJD in Multisequence MRI of the Brain - Marius George Linguraru; Nicholas Ayache; Miguel Ángel González Ballester; Éric Bardinet; Damien Galanaud; Stéphane Haïk; Baptiste Faucheux; Patrick Cozzone; Didier Dormont; Jean-Philippe Brandel (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part II, 2005)

Iconic feature based nonrigid registration: the PASHA algorithm - Pascal Cachier; Éric Bardinet; Didier Dormont; Xavier Pennec; Nicholas Ayache (Comput. Vis. Image Underst., 2003)

Patient-Specific Biomechanical Model of the Brain: Application to Parkinson's Disease Procedure - Olivier Clatz; Hervé Delingette; Éric Bardinet; Didier Dormont; Nicholas Ayache (Surgery Simulation and Soft Tissue Modeling, International Symposium, IS4TM 2003, Juan-Les-Pins, France, June 12-13, 2003, Proceedings, 2003)

A Posteriori Validation of Pre-operative Planning in Functional Neurosurgery by Quantification of Brain Pneumocephalus - Éric Bardinet; Pascal Cathier; Alexis Roche; Nicholas Ayache; Didier Dormont (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, 5th International Conference, Tokyo, Japan, September 25-28, 2002, Proceedings, Part I, 2002)

Co-registration of Histological, Optical and MR Data of the Human Brain - Éric Bardinet; Sébastien Ourselin; Didier Dormont; Grégoire Malandain; Dominique Tandé; K. Parain; Nicholas Ayache; Jérôme Yelnik (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, 5th International Conference, Tokyo, Japan, September 25-28, 2002, Proceedings, Part I, 2002)

Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia - Sébastien Ourselin; Éric Bardinet; Didier Dormont; Grégoire Malandain; Alexis Roche; Nicholas Ayache; Dominique Tandé; K. Parain; Jérôme Yelnik (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, 4th International Conference, Utrecht, The Netherlands, October 14-17, 2001, Proceedings, 2001)