Efficient Fork-Join on GPUs Through Warp Specialization - Arpith Chacko Jacob; Alexandre E. Eichenberger; Hyojin Sung; Samuel F. Antão; Gheorghe-Teodor Bercea; Carlo Bertolli; Alexey Bataev; Tian Jin; Tong Chen; Zehra Sura; Georgios Rokos; Kevin O'Brien (24th IEEE International Conference on High Performance Computing, HiPC 2017, Jaipur, India, December 18-21, 2017, 2017)

Implementing implicit OpenMP data sharing on GPUs - Gheorghe-Teodor Bercea; Carlo Bertolli; Arpith C. Jacob; Alexandre E. Eichenberger; Alexey Bataev; Georgios Rokos; Hyojin Sung; Tong Chen; Kevin O'Brien (Proceedings of the Fourth Workshop on the LLVM Compiler Infrastructure in HPC, LLVM-HPC@SC 2017, Denver, CO, USA, November 13, 2017, 2017)

Implementing implicit OpenMP data sharing on GPUs - Gheorghe-Teodor Bercea; Carlo Bertolli; Arpith C. Jacob; Alexandre E. Eichenberger; Alexey Bataev; Georgios Rokos; Hyojin Sung; Tong Chen; Kevin O'Brien (CoRR, 2017)

The workshop on compiler-driven performance - Xipeng Shen; Clark Verbrugge; Daniel Neilson; Arpith C. Jacob (Proceedings of the 26th Annual International Conference on Computer Science and Software Engineering, CASCON 2016, Toronto, Ontario, Canada, October 31 - November 2, 2016, 2016)

Early Experiences Porting Three Applications to OpenMP 4.5 - Ian Karlin; Tom Scogland; Arpith C. Jacob; Samuel F. Antão; Gheorghe-Teodor Bercea; Carlo Bertolli; Bronis R. de Supinski; Erik W. Draeger; Alexandre E. Eichenberger; Jim Glosli; Holger Jones; Adam Kunen; et al. (OpenMP: Memory, Devices, and Tasks - 12th International Workshop on OpenMP, IWOMP 2016, Nara, Japan, October 5-7, 2016, Proceedings, 2016)

Offloading Support for OpenMP in Clang and LLVM - Samuel F. Antão; Alexey Bataev; Arpith C. Jacob; Gheorghe-Teodor Bercea; Alexandre E. Eichenberger; Georgios Rokos; Matt Martineau; Tian Jin; Guray Ozen; Zehra Sura; Tong Chen; Hyojin Sung; et al. (Third Workshop on the LLVM Compiler Infrastructure in HPC, LLVM-HPC@SC 2016, Salt Lake City, UT, USA, November 14, 2016, 2016)

Performance Analysis and Optimization of Clang's OpenMP 4.5 GPU Support - Matt Martineau; Simon McIntosh-Smith; Carlo Bertolli; Arpith C. Jacob; Samuel F. Antão; Alexandre E. Eichenberger; Gheorghe-Teodor Bercea; Tong Chen; Tian Jin; Kevin O'Brien; Georgios Rokos; Hyojin Sung; et al. (7th International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems, PMBS@SC 2016, Salt Lake, UT, USA, November 14, 2016, 2016)

From Describing to Prescribing Parallelism: Translating the SPEC ACCEL OpenACC Suite to OpenMP Target Directives - Guido Juckeland; Oscar R. Hernandez; Arpith C. Jacob; Daniel Neilson; Verónica G. Vergara Larrea; Sandra Wienke; Alexander Bobyr; William C. Brantley; Sunita Chandrasekaran; Mathew E. Colgrove; Alexander Grund; Robert Henschel; et al. (High Performance Computing - ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Frankfurt, Germany, June 19-23, 2016, Revised Selected Papers, 2016)

Active Memory Cube: A processing-in-memory architecture for exascale systems - Ravi Nair; Samuel Antão; Carlo Bertolli; Pradip Bose; José R. Brunheroto; Tong Chen; Chen-Yong Cher; Carlos H. A. Costa; J. Doi; Constantinos Evangelinos; Bruce M. Fleischer; Thomas W. Fox; et al. (IBM J. Res. Dev., 2015)

Data access optimization in a processing-in-memory system - Zehra Sura; Arpith C. Jacob; Tong Chen; Bryan S. Rosenburg; Olivier Sallenave; Carlo Bertolli; Samuel Antao; José R. Brunheroto; Yoonho Park; Kevin O'Brien; Ravi Nair (Proceedings of the 12th ACM International Conference on Computing Frontiers, CF'15, Ischia, Italy, May 18-21, 2015, 2015)

Exploiting Fine- and Coarse-Grained Parallelism Using a Directive Based Approach - Arpith C. Jacob; Ravi Nair; Alexandre E. Eichenberger; Samuel Antão; Carlo Bertolli; Tong Chen; Zehra Sura; Kevin O'Brien; Michael Wong (OpenMP: Heterogenous Execution and Data Movements - 11th International Workshop on OpenMP, IWOMP 2015, Aachen, Germany, October 1-2, 2015, Proceedings, 2015)

Progressive Codesign of an Architecture and Compiler Using a Proxy Application - Arpith C. Jacob; Ravi Nair; Tong Chen; Zehra Sura; Changhoan Kim; Carlo Bertolli; Samuel Antão; Kevin O'Brien (27th International Symposium on Computer Architecture and High Performance Computing, SBAC-PAD 2015, Florianópolis, Brazil, October 17-21, 2015, 2015)

Performance analysis of OpenMP on a GPU using a CORAL proxy application - Gheorghe-Teodor Bercea; Carlo Bertolli; Samuel F. Antão; Arpith C. Jacob; Alexandre E. Eichenberger; Tong Chen; Zehra Sura; Hyojin Sung; Georgios Rokos; David Appelhans; Kevin O'Brien (Proceedings of the 6th International Workshop on Performance Modeling, Benchmarking, and Simulation of High Performance Computing Systems, PMBS 2015, Austin, Texas, USA, November 15, 2015, 2015)

Integrating GPU support for OpenMP offloading directives into Clang - Carlo Bertolli; Samuel Antão; Gheorghe-Teodor Bercea; Arpith C. Jacob; Alexandre E. Eichenberger; Tong Chen; Zehra Sura; Hyojin Sung; Georgios Rokos; David Appelhans; Kevin O'Brien (Proceedings of the Second Workshop on the LLVM Compiler Infrastructure in HPC, LLVM 2015, Austin, Texas, USA, November 15, 2015, 2015)

Coordinating GPU threads for OpenMP 4.0 in LLVM - Carlo Bertolli; Samuel Antão; Alexandre E. Eichenberger; Kevin O'Brien; Zehra Sura; Arpith C. Jacob; Tong Chen; Olivier Sallenave (Proceedings of the 2014 LLVM Compiler Infrastructure in HPC, LLVM 2014, New Orleans, LA, USA, November 17, 2014, 2014)

Design of throughput-optimized arrays from recurrence abstractions - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (21st IEEE International Conference on Application-specific Systems Architectures and Processors, ASAP 2010, Rennes, France, 7-9 July 2010, 2010)

Rapid RNA Folding: Analysis and Acceleration of the Zuker Recurrence - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (18th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, FCCM 2010, Charlotte, North Carolina, USA, 2-4 May 2010, 2010)

Design space exploration of throughput-optimized arrays from recurrence abstractions (abstract only) - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (Proceedings of the ACM/SIGDA 18th International Symposium on Field Programmable Gate Arrays, FPGA 2010, Monterey, California, USA, February 21-23, 2010, 2010)

Optimal runtime reconfiguration strategies for systolic arrays - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (19th International Conference on Field Programmable Logic and Applications, FPL 2009, August 31 - September 2, 2009, Prague, Czech Republic, 2009)

Hardware Technologies for High-Performance Data-Intensive Computing - Maya B. Gokhale; Jonathan D. Cohen; Andy Yoo; William Marcus Miller; Arpith C. Jacob; Craig D. Ulmer; Roger A. Pearce (Computer, 2008)

Mercury BLASTP: Accelerating Protein Sequence Alignment - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Brandon Harris; Roger D. Chamberlain (ACM Trans. Reconfigurable Technol. Syst., 2008)

Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs - Arpith C. Jacob; Jeremy Buhler; Roger D. Chamberlain (19th IEEE International Conference on Application-Specific Systems, Architectures and Processors, ASAP 2008, July 2-4, 2008, Leuven, Belgium, 2008)

Biosequence Similarity Search on the Mercury System - Praveen Krishnamurthy; Jeremy Buhler; Roger D. Chamberlain; Mark A. Franklin; Kwame Gyang; Arpith C. Jacob; Joseph M. Lancaster (J. VLSI Signal Process., 2007)

FPGA-accelerated seed generation in Mercury BLASTP - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2007, 23-25 April 2007, Napa, California, USA, 2007)

A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP - Brandon Harris; Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (FPL 2007, International Conference on Field Programmable Logic and Applications, Amsterdam, The Netherlands, 27-29 August 2007, 2007)

Preliminary results in accelerating profile HMM search on FPGAs - Arpith C. Jacob; Joseph M. Lancaster; Jeremy D. Buhler; Roger D. Chamberlain (21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA, 2007)

Whole Genome Comparison on a Network of Workstations - Arpith C. Jacob; Sugata Sanyal; Marcin Paprzycki; Rajan Arora; Maria Ganzha (6th International Symposium on Parallel and Distributed Computing (ISPDC 2007), Hagenberg, Austria, July 5-8, 2007, 2007)

Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware - Arpith C. Jacob; Marcin Paprzycki; Maria Ganzha; Sugata Sanyal (Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers, 2007)

Language classification using n-grams accelerated by FPGA-based Bloom filters - Arpith C. Jacob; Maya B. Gokhale (Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications, HPRCTA 2007,held in conjunction with SC07, Reno, Nevada, USA, November 11, 2007, 2007)

Scalable Softcore Vector Processor for Biosequence Applications - Arpith C. Jacob; Brandon Harris; Jeremy Buhler; Roger D. Chamberlain; Young H. Cho (14th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2006), 24-26 April 2006, Napa, CA, USA, Proceedings, 2006)