The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain - Seth A. Ament; Ricky S. Adkins; Robert Carter; Elena Chrysostomou; Carlo Colantuoni; Jonathan Crabtree; Heather Huot Creasy; Kylee Degatano; Victor Felix; Peter Gandt; Gwenn a Garden; Michelle G. Giglio; et al. (Nucleic Acids Res., 2023)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

The Human Disease Ontology 2022 update - Lynn M. Schriml; James B. Munro; Mike Schor; Dustin Olley; Carrie McCracken; Victor Felix; J. Allen Baron; Rebecca C. Jackson; Susan M. Bello; Cynthia Bearer; Richard Lichenstein; Katharine Bisordi; et al. (Nucleic Acids Res., 2022)

ECO: the Evidence and Conclusion Ontology, an update for 2022 - Suvarna Nadendla; Rebecca C. Jackson; James B. Munro; Federica Quaglia; Bálint Mészáros; Dustin Olley; Elizabeth T. Hobbs; Stephen M. Goralski; Marcus C. Chibucos; Christopher J. Mungall; Silvio C. E. Tosatto; Ivan Erill; et al. (Nucleic Acids Res., 2022)

Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem - Michelle G. Giglio; Suvarna Nadendla; Arthur Brady; Amanda Charbonneau; Karl Czajkowski; Jeremy Yang; Tom Gillespie; Philippe Rocca-Serra; Jeffrey S. Grethe; Raja Mazumder; Bernard de Bono; Jonathan C. Silverstein; et al. (Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25 - 28, 2022, 2022)

Standardization of assay representation in the Ontology for Biomedical Investigations - Randi Vita; Jie Zheng; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (Frontiers Res. Metrics Anal., 2021)

The Gene Ontology resource: enriching a GOld mine - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

HMPDACC: a Human Microbiome Project Multi-omic data resource - Heather Huot Creasy; Victor Felix; Jain Aluvathingal; Jonathan Crabtree; Olukemi O. Ifeonu; James Matsumura; Carrie McCracken; Lance Nickel; Joshua Orvis; Mike Schor; Michelle G. Giglio; Anup Mahurkar; et al. (Nucleic Acids Res., 2021)

Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), Virtual conference hosted in Bolzano, Italy, September 17, 2020, 2020)

Phenotype annotation with the ontology of microbial phenotypes (OMP) - Deborah A. Siegele; Sandra A. LaBonte; Peter I-Fan Wu; Marcus C. Chibucos; Suvarna Nandendla; Michelle G. Giglio; James C. Hu (J. Biomed. Semant., 2019)

ECO, the Evidence & Conclusion Ontology: community standard for evidence information - Michelle G. Giglio; Rebecca Tauber; Suvarna Nadendla; James B. Munro; Dustin Olley; Shoshannah Ball; Elvira Mitraka; Lynn M. Schriml; Pascale Gaudet; Elizabeth T. Hobbs; Ivan Erill; Deborah A. Siegele; et al. (Nucleic Acids Res., 2019)

Human Disease Ontology 2018 update: classification, content and workflow expansion - Lynn M. Schriml; Elvira Mitraka; James B. Munro; Becky Tauber; Mike Schor; Lance Nickle; Victor Felix; Linda Jeng; Cynthia Bearer; Richard Lichenstein; Katharine Bisordi; Nicole Campion; et al. (Nucleic Acids Res., 2019)

Current Development in the Evidence and Conclusion Ontology (ECO) - Rebecca Tauber; James B. Munro; Suvarna Nadendla; Binika Chunara; Marcus C. Chibucos; Michelle G. Giglio (Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018, 2018)

Supporting Database Annotations and Beyond with the Evidence & Conclusion Ontology (ECO) - Marcus C. Chibucos; Suvarna Nadendla; James B. Munro; Elvira Mitraka; Dustin Olley; Nicole A. Vasilevsky; Matthew H. Brush; Michelle G. Giglio (Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016, 2016)

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations - Frederic B. Bastian; Marcus C. Chibucos; Pascale Gaudet; Michelle G. Giglio; Gemma L. Holliday; Hong Huang; Suzanna E. Lewis; Anne Niknejad; Sandra E. Orchard; Sylvain Poux; Nives Skunca; Marc Robinson-Rechavi (Database J. Biol. Databases Curation, 2015)

Standardized description of scientific evidence using the Evidence Ontology (ECO) - Marcus C. Chibucos; Christopher J. Mungall; Rama Balakrishnan; Karen R. Christie; Rachael P. Huntley; Owen White; Judith A. Blake; Suzanna E. Lewis; Michelle G. Giglio (Database J. Biol. Databases Curation, 2014)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

BioCreative III interactive task: an overview - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

The Ontology of Microbial Phenotypes (OMP): A Precomposed Ontology Based on Cross Products from Multiple External Ontologies that is Used for Guiding Microbial Phenotype Annotation - Marcus C. Chibucos; Adrienne E. Zweifel; Deborah A. Siegele; Peter Uetz; Michelle G. Giglio; James C. Hu (Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011, 2011)

iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology - Zhang-Zhi Hu; K. Bretonnel Cohen; Lynette Hirschman; Alfonso Valencia; Hongfang Liu; Michelle G. Giglio; Cathy H. Wu (2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008, 2008)

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes - Jeremy D. Selengut; Daniel H. Haft; Tanja Davidsen; Anurhada Ganapathy; Michelle Gwinn-Giglio; William C. Nelson; Alexander R. Richter; Owen White (Nucleic Acids Res., 2007)