Estimating DNA coverage and abundance in metagenomes using a gamma approximation. - Hooper, Sean D.; Dalevi, Daniel; Pati, Amrita; Mavrommatis, Konstantinos; Ivanova, Natalia; Kyrpides, Nikos (Bioinform., 2010)

OnTheFly: a tool for automated document-based text annotation, data linking and network generation. - Pavlopoulos, Georgios A.; Pafilis, Evangelos; Kuhn, Michael; Hooper, Sean D.; Schneider, Reinhard (Bioinform., 2009)

jClust: a clustering and visualization toolbox. - Pavlopoulos, Georgios A.; Moschopoulos, Charalampos N.; Hooper, Sean D.; Schneider, Reinhard; Kossida, Sophia (Bioinform., 2009)

Annotation of metagenome short reads using proxygenes. - Dalevi, Daniel; Ivanova, Natalia; Mavrommatis, Konstantinos; Hooper, Sean D.; Szeto, Ernest; Hugenholtz, Philip; Kyrpides, Nikos; Markowitz, Victor M. (2008)

Medusa: a simple tool for interaction graph analysis. - Hooper, Sean D.; Bork, Peer (Bioinform., 2005)

STRING: known and predicted protein-protein associations, integrated and transferred across organisms. - Mering, Christian von; Jensen, Lars Juhl; Snel, Berend; Hooper, Sean D.; Krupp, Markus; Foglierini, Mathilde; Jouffre, Nelly; Huynen, Martijn A.; Bork, Peer (Nucleic Acids Res., 2005)