BibTeX records: Fuyi Li

download as .bib file

@article{DBLP:journals/bib/GuoRL25,
  author       = {Xudong Guo and
                  Zixu Ran and
                  Fuyi Li},
  title        = {Kinase-inhibitor binding affinity prediction with pretrained graph
                  encoder and language model},
  journal      = {Briefings Bioinform.},
  volume       = {26},
  number       = {4},
  year         = {2025},
  url          = {https://doi.org/10.1093/bib/bbaf338},
  doi          = {10.1093/BIB/BBAF338},
  timestamp    = {Sun, 10 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuoRL25.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcasI/MaoLZLLWYCZY25,
  author       = {Wei Mao and
                  Dingbang Liu and
                  Haoxiang Zhou and
                  Fuyi Li and
                  Kai Li and
                  Qiuping Wu and
                  Jiaqi Yang and
                  Quan Cheng and
                  Liuyang Zhang and
                  Hao Yu},
  title        = {A 28-nm 135.19 {TOPS/W} Bootstrapped-SRAM Compute-in-Memory Accelerator
                  With Layer-Wise Precision and Sparsity},
  journal      = {{IEEE} Trans. Circuits Syst. {I} Regul. Pap.},
  volume       = {72},
  number       = {7},
  pages        = {3236--3246},
  year         = {2025},
  url          = {https://doi.org/10.1109/TCSI.2024.3486322},
  doi          = {10.1109/TCSI.2024.3486322},
  timestamp    = {Sat, 09 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcasI/MaoLZLLWYCZY25.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/ZhaoSWRGL25,
  author       = {Zexing Zhao and
                  Guangsi Shi and
                  Xiaopeng Wu and
                  Ruohua Ren and
                  Xiaojun Gao and
                  Fuyi Li},
  title        = {DIG-Mol: {A} Contrastive Dual-Interaction Graph Neural Network for
                  Molecular Property Prediction},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {29},
  number       = {3},
  pages        = {1735--1746},
  year         = {2025},
  url          = {https://doi.org/10.1109/JBHI.2024.3464674},
  doi          = {10.1109/JBHI.2024.3464674},
  timestamp    = {Tue, 01 Apr 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/ZhaoSWRGL25.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Pan0ZZLLP25,
  author       = {Junjun Pan and
                  Yixin Liu and
                  Xin Zheng and
                  Yizhen Zheng and
                  Alan Wee{-}Chung Liew and
                  Fuyi Li and
                  Shirui Pan},
  editor       = {Toby Walsh and
                  Julie Shah and
                  Zico Kolter},
  title        = {A Label-free Heterophily-guided Approach for Unsupervised Graph Fraud
                  Detection},
  booktitle    = {AAAI-25, Sponsored by the Association for the Advancement of Artificial
                  Intelligence, February 25 - March 4, 2025, Philadelphia, PA, {USA}},
  pages        = {12443--12451},
  publisher    = {{AAAI} Press},
  year         = {2025},
  url          = {https://doi.org/10.1609/aaai.v39i12.33356},
  doi          = {10.1609/AAAI.V39I12.33356},
  timestamp    = {Fri, 22 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/Pan0ZZLLP25.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2502-13308,
  author       = {Junjun Pan and
                  Yixin Liu and
                  Xin Zheng and
                  Yizhen Zheng and
                  Alan Wee{-}Chung Liew and
                  Fuyi Li and
                  Shirui Pan},
  title        = {A Label-Free Heterophily-Guided Approach for Unsupervised Graph Fraud
                  Detection},
  journal      = {CoRR},
  volume       = {abs/2502.13308},
  year         = {2025},
  url          = {https://doi.org/10.48550/arXiv.2502.13308},
  doi          = {10.48550/ARXIV.2502.13308},
  eprinttype    = {arXiv},
  eprint       = {2502.13308},
  timestamp    = {Wed, 19 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2502-13308.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SongSLLW24,
  author       = {Renhua Song and
                  Gavin J. Sutton and
                  Fuyi Li and
                  Qian Liu and
                  Justin J.{-}L. Wong},
  title        = {Variable calling of m6A and associated features in databases: a guide
                  for end-users},
  journal      = {Briefings Bioinform.},
  volume       = {25},
  number       = {3},
  year         = {2024},
  url          = {https://doi.org/10.1093/bib/bbae434},
  doi          = {10.1093/BIB/BBAE434},
  timestamp    = {Sun, 10 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SongSLLW24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLZISLGYS24,
  author       = {Xiaoyu Wang and
                  Fuyi Li and
                  Yiwen Zhang and
                  Seiya Imoto and
                  Hsin{-}Hui Shen and
                  Shanshan Li and
                  Yuming Guo and
                  Jian Yang and
                  Jiangning Song},
  title        = {Deep learning approaches for non-coding genetic variant effect prediction:
                  current progress and future prospects},
  journal      = {Briefings Bioinform.},
  volume       = {25},
  number       = {3},
  year         = {2024},
  url          = {https://doi.org/10.1093/bib/bbae446},
  doi          = {10.1093/BIB/BBAE446},
  timestamp    = {Mon, 11 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangLZISLGYS24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuJBGZL24,
  author       = {Tianxiang Liu and
                  Cangzhi Jia and
                  Yue Bi and
                  Xudong Guo and
                  Quan Zou and
                  Fuyi Li},
  title        = {scDFN: enhancing single-cell RNA-seq clustering with deep fusion networks},
  journal      = {Briefings Bioinform.},
  volume       = {25},
  number       = {6},
  year         = {2024},
  url          = {https://doi.org/10.1093/bib/bbae486},
  doi          = {10.1093/BIB/BBAE486},
  timestamp    = {Sat, 30 Nov 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiuJBGZL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLXWHBYL24,
  author       = {Zhenhao Zhang and
                  Yuxi Liu and
                  Meichen Xiao and
                  Kun Wang and
                  Yu Huang and
                  Jiang Bian and
                  Ruolin Yang and
                  Fuyi Li},
  title        = {Graph contrastive learning as a versatile foundation for advanced
                  scRNA-seq data analysis},
  journal      = {Briefings Bioinform.},
  volume       = {25},
  number       = {6},
  year         = {2024},
  url          = {https://doi.org/10.1093/bib/bbae558},
  doi          = {10.1093/BIB/BBAE558},
  timestamp    = {Thu, 07 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangLXWHBYL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/WangPLWZSTGLSPLS24,
  author       = {Xiaoyu Wang and
                  Nitin Patil and
                  Fuyi Li and
                  Zhikang Wang and
                  Haolan Zhan and
                  Daniel Schmidt and
                  Philip Thompson and
                  Yuming Guo and
                  Cornelia B. Landersdorfer and
                  Hsin{-}Hui Shen and
                  Anton Y. Peleg and
                  Jian Li and
                  Jiangning Song},
  title        = {PmxPred: {A} data-driven approach for the identification of active
                  polymyxin analogues against gram-negative bacteria},
  journal      = {Comput. Biol. Medicine},
  volume       = {168},
  pages        = {107681},
  year         = {2024},
  url          = {https://doi.org/10.1016/j.compbiomed.2023.107681},
  doi          = {10.1016/J.COMPBIOMED.2023.107681},
  timestamp    = {Wed, 11 Jun 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/WangPLWZSTGLSPLS24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YanGLZLSY24,
  author       = {Zihao Yan and
                  Fang Ge and
                  Yan Liu and
                  Yumeng Zhang and
                  Fuyi Li and
                  Jiangning Song and
                  Dong{-}Jun Yu},
  title        = {TransEFVP: {A} Two-Stage Approach for the Prediction of Human Pathogenic
                  Variants Based on Protein Sequence Embedding Fusion},
  journal      = {J. Chem. Inf. Model.},
  volume       = {64},
  number       = {4},
  pages        = {1407--1418},
  year         = {2024},
  url          = {https://doi.org/10.1021/acs.jcim.3c02019},
  doi          = {10.1021/ACS.JCIM.3C02019},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/YanGLZLSY24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcasII/MaoLLXHLYLH24,
  author       = {Wei Mao and
                  Fuyi Li and
                  Jun Liu and
                  Rui Xiao and
                  Kejie Huang and
                  Yongfu Li and
                  Hao Yu and
                  Yan Liu and
                  Genquan Han},
  title        = {A Low-Power Charge-Domain Bit-Scalable Readout System for Fully-Parallel
                  Computing-in-Memory Accelerators},
  journal      = {{IEEE} Trans. Circuits Syst. {II} Express Briefs},
  volume       = {71},
  number       = {6},
  pages        = {2916--2920},
  year         = {2024},
  url          = {https://doi.org/10.1109/TCSII.2023.3330080},
  doi          = {10.1109/TCSII.2023.3330080},
  timestamp    = {Sat, 31 May 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcasII/MaoLLXHLYLH24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaHWGL24,
  author       = {Runchang Jia and
                  Zhijie He and
                  Cong Wang and
                  Xudong Guo and
                  Fuyi Li},
  title        = {MetalPrognosis: {A} Biological Language Model-Based Approach for Disease-Associated
                  Mutations in Metal-Binding Site Prediction},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {21},
  number       = {6},
  pages        = {2340--2348},
  year         = {2024},
  url          = {https://doi.org/10.1109/TCBB.2024.3467093},
  doi          = {10.1109/TCBB.2024.3467093},
  timestamp    = {Sat, 16 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/JiaHWGL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/WangHJPCSL24,
  author       = {Cong Wang and
                  Zhijie He and
                  Runchang Jia and
                  Shirui Pan and
                  Lachlan J. M. Coin and
                  Jiangning Song and
                  Fuyi Li},
  title        = {{PLANNER:} {A} Multi-Scale Deep Language Model for the Origins of
                  Replication Site Prediction},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {28},
  number       = {4},
  pages        = {2445--2454},
  year         = {2024},
  url          = {https://doi.org/10.1109/JBHI.2024.3349584},
  doi          = {10.1109/JBHI.2024.3349584},
  timestamp    = {Sat, 16 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/WangHJPCSL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/RanWSPL24,
  author       = {Zixu Ran and
                  Cong Wang and
                  Heyun Sun and
                  Shirui Pan and
                  Fuyi Li},
  title        = {Characterizing Secretion System Effector Proteins With Structure-Aware
                  Graph Neural Networks and Pre-Trained Language Models},
  journal      = {{IEEE} J. Biomed. Health Informatics},
  volume       = {28},
  number       = {9},
  pages        = {5649--5657},
  year         = {2024},
  url          = {https://doi.org/10.1109/JBHI.2024.3413146},
  doi          = {10.1109/JBHI.2024.3413146},
  timestamp    = {Sun, 17 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/titb/RanWSPL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tweb/WangZJLQP24,
  author       = {Luzhi Wang and
                  Yizhen Zheng and
                  Di Jin and
                  Fuyi Li and
                  Yongliang Qiao and
                  Shirui Pan},
  title        = {Contrastive Graph Similarity Networks},
  journal      = {{ACM} Trans. Web},
  volume       = {18},
  number       = {2},
  pages        = {17:1--17:20},
  year         = {2024},
  url          = {https://doi.org/10.1145/3580511},
  doi          = {10.1145/3580511},
  timestamp    = {Sun, 19 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tweb/WangZJLQP24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/ZhangLBJSLLS24,
  author       = {Zhenhao Zhang and
                  Yuxi Liu and
                  Jiang Bian and
                  Antonio Jimeno{-}Yepes and
                  Jun Shen and
                  Fuyi Li and
                  Guodong Long and
                  Flora D. Salim},
  editor       = {Albert Bifet and
                  Tomas Krilavicius and
                  Ioanna Miliou and
                  Slawomir Nowaczyk},
  title        = {Boosting Patient Representation Learning via Graph Contrastive Learning},
  booktitle    = {Machine Learning and Knowledge Discovery in Databases. Applied Data
                  Science Track - European Conference, {ECML} {PKDD} 2024, Vilnius,
                  Lithuania, September 9-13, 2024, Proceedings, Part {IX}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14949},
  pages        = {335--350},
  publisher    = {Springer},
  year         = {2024},
  url          = {https://doi.org/10.1007/978-3-031-70378-2\_21},
  doi          = {10.1007/978-3-031-70378-2\_21},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/pkdd/ZhangLBJSLLS24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/socc/LiXXYZLZH024,
  author       = {Fuyi Li and
                  Yu Xia and
                  Shuai Xiao and
                  Pengcheng Yang and
                  Xingyu Zhu and
                  Bo Li and
                  Jiuren Zhou and
                  Genquan Han and
                  Wei Mao},
  editor       = {Diana G{\"{o}}hringer and
                  Uwe G{\"{a}}bler and
                  Tanja Harbaum and
                  Klaus Hofmann},
  title        = {Accurate Charge-Domain Bootstrapped Computing-in-Memory {SRAM} Design
                  with Wide Programmable Output Voltage Range},
  booktitle    = {37th {IEEE} International System-on-Chip Conference, {SOCC} 2024,
                  Dresden, Germany, September 16-19, 2024},
  pages        = {1--6},
  publisher    = {{IEEE}},
  year         = {2024},
  url          = {https://doi.org/10.1109/SOCC62300.2024.10737831},
  doi          = {10.1109/SOCC62300.2024.10737831},
  timestamp    = {Tue, 19 Nov 2024 13:29:26 +0100},
  biburl       = {https://dblp.org/rec/conf/socc/LiXXYZLZH024.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2405-02628,
  author       = {Zexing Zhao and
                  Guangsi Shi and
                  Xiaopeng Wu and
                  Ruohua Ren and
                  Xiaojun Gao and
                  Fuyi Li},
  title        = {Contrastive Dual-Interaction Graph Neural Network for Molecular Property
                  Prediction},
  journal      = {CoRR},
  volume       = {abs/2405.02628},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2405.02628},
  doi          = {10.48550/ARXIV.2405.02628},
  eprinttype    = {arXiv},
  eprint       = {2405.02628},
  timestamp    = {Fri, 07 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2405-02628.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GeLIALTYWXSY23,
  author       = {Fang Ge and
                  Chen Li and
                  Shahid Iqbal and
                  Muhammad Arif and
                  Fuyi Li and
                  Maha A. Thafar and
                  Zihao Yan and
                  Apilak Worachartcheewan and
                  Xiaofeng Xu and
                  Jiangning Song and
                  Dong{-}Jun Yu},
  title        = {VPatho: a deep learning-based two-stage approach for accurate prediction
                  of gain-of-function and loss-of-function variants},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {1},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbac535},
  doi          = {10.1093/BIB/BBAC535},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GeLIALTYWXSY23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiaZLQRLMZADCS23,
  author       = {Xiaoti Jia and
                  Pei Zhao and
                  Fuyi Li and
                  Zhaohui Qin and
                  Haoran Ren and
                  Junzhou Li and
                  Chunbo Miao and
                  Quanzhi Zhao and
                  Tatsuya Akutsu and
                  Gensheng Dou and
                  Zhen Chen and
                  Jiangning Song},
  title        = {ResNetKhib: a novel cell type-specific tool for predicting lysine
                  2-hydroxyisobutylation sites via transfer learning},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {2},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad063},
  doi          = {10.1093/BIB/BBAD063},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/JiaZLQRLMZADCS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLGBLPCS23,
  author       = {Ruyi Chen and
                  Fuyi Li and
                  Xudong Guo and
                  Yue Bi and
                  Chen Li and
                  Shirui Pan and
                  Lachlan J. M. Coin and
                  Jiangning Song},
  title        = {{ATTIC} is an integrated approach for predicting A-to-I {RNA} editing
                  sites in three species},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {3},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad170},
  doi          = {10.1093/BIB/BBAD170},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ChenLGBLPCS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/XuLLGLSPLIYAS23,
  author       = {Jing Xu and
                  Fuyi Li and
                  Chen Li and
                  Xudong Guo and
                  Cornelia B. Landersdorfer and
                  Hsin{-}Hui Shen and
                  Anton Y. Peleg and
                  Jian Li and
                  Seiya Imoto and
                  Jianhua Yao and
                  Tatsuya Akutsu and
                  Jiangning Song},
  title        = {iAMPCN: a deep-learning approach for identifying antimicrobial peptides
                  and their functional activities},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {4},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad240},
  doi          = {10.1093/BIB/BBAD240},
  timestamp    = {Fri, 19 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/XuLLGLSPLIYAS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuLGWCWSJ23,
  author       = {Yan Zhu and
                  Fuyi Li and
                  Xudong Guo and
                  Xiaoyu Wang and
                  Lachlan J. M. Coin and
                  Geoffrey I. Webb and
                  Jiangning Song and
                  Cangzhi Jia},
  title        = {{TIMER} is a Siamese neural network-based framework for identifying
                  both general and species-specific bacterial promoters},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {4},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad209},
  doi          = {10.1093/BIB/BBAD209},
  timestamp    = {Thu, 27 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhuLGWCWSJ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWGAWCKS23,
  author       = {Fuyi Li and
                  Cong Wang and
                  Xudong Guo and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Lachlan J. M. Coin and
                  Lukasz A. Kurgan and
                  Jiangning Song},
  title        = {\emph{ProsperousPlus}: a one-stop and comprehensive platform for accurate
                  protease-specific substrate cleavage prediction and machine-learning
                  model construction},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {6},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad372},
  doi          = {10.1093/BIB/BBAD372},
  timestamp    = {Sat, 16 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiWGAWCKS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/LiGBJPPLGCS23,
  author       = {Fuyi Li and
                  Xudong Guo and
                  Yue Bi and
                  Runchang Jia and
                  Miranda E. Pitt and
                  Shirui Pan and
                  Shuqin Li and
                  Robin B. Gasser and
                  Lachlan J. M. Coin and
                  Jiangning Song},
  title        = {Digerati - {A} multipath parallel hybrid deep learning framework for
                  the identification of mycobacterial {PE/PPE} proteins},
  journal      = {Comput. Biol. Medicine},
  volume       = {163},
  pages        = {107155},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.compbiomed.2023.107155},
  doi          = {10.1016/J.COMPBIOMED.2023.107155},
  timestamp    = {Sun, 24 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/LiGBJPPLGCS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLYSY23,
  author       = {Ying Zhang and
                  Fang Ge and
                  Fuyi Li and
                  Xibei Yang and
                  Jiangning Song and
                  Dong{-}Jun Yu},
  title        = {Prediction of Multiple Types of {RNA} Modifications via Biological
                  Language Model},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {20},
  number       = {5},
  pages        = {3205--3214},
  year         = {2023},
  url          = {https://doi.org/10.1109/TCBB.2023.3283985},
  doi          = {10.1109/TCBB.2023.3283985},
  timestamp    = {Sun, 19 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcbb/ZhangGLYSY23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LiuD0LZP23,
  author       = {Yixin Liu and
                  Kaize Ding and
                  Qinghua Lu and
                  Fuyi Li and
                  Leo Yu Zhang and
                  Shirui Pan},
  editor       = {Alice Oh and
                  Tristan Naumann and
                  Amir Globerson and
                  Kate Saenko and
                  Moritz Hardt and
                  Sergey Levine},
  title        = {Towards Self-Interpretable Graph-Level Anomaly Detection},
  booktitle    = {Advances in Neural Information Processing Systems 36: Annual Conference
                  on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
                  LA, USA, December 10 - 16, 2023},
  year         = {2023},
  url          = {http://papers.nips.cc/paper\_files/paper/2023/hash/1c6f06863df46de009a7a41b41c95cad-Abstract-Conference.html},
  timestamp    = {Sun, 02 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/LiuD0LZP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-16520,
  author       = {Yixin Liu and
                  Kaize Ding and
                  Qinghua Lu and
                  Fuyi Li and
                  Leo Yu Zhang and
                  Shirui Pan},
  title        = {Towards Self-Interpretable Graph-Level Anomaly Detection},
  journal      = {CoRR},
  volume       = {abs/2310.16520},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2310.16520},
  doi          = {10.48550/ARXIV.2310.16520},
  eprinttype    = {arXiv},
  eprint       = {2310.16520},
  timestamp    = {Sun, 02 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2310-16520.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiDLHGXWPJZWCLS22,
  author       = {Fuyi Li and
                  Shuangyu Dong and
                  Andr{\'{e}} Leier and
                  Meiya Han and
                  Xudong Guo and
                  Jing Xu and
                  Xiaoyu Wang and
                  Shirui Pan and
                  Cangzhi Jia and
                  Yang Zhang and
                  Geoffrey I. Webb and
                  Lachlan J. M. Coin and
                  Chen Li and
                  Jiangning Song},
  title        = {Positive-unlabeled learning in bioinformatics and computational biology:
                  a brief review},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {1},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbab461},
  doi          = {10.1093/BIB/BBAB461},
  timestamp    = {Thu, 27 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiDLHGXWPJZWCLS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLXRWGLS22,
  author       = {Xiaoyu Wang and
                  Fuyi Li and
                  Jing Xu and
                  Jia Rong and
                  Geoffrey I. Webb and
                  Zongyuan Ge and
                  Jian Li and
                  Jiangning Song},
  title        = {{ASPIRER:} a new computational approach for identifying non-classical
                  secreted proteins based on deep learning},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {2},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac031},
  doi          = {10.1093/BIB/BBAC031},
  timestamp    = {Tue, 01 Apr 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangLXRWGLS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangJLLZAWZCS22,
  author       = {Meng Zhang and
                  Cangzhi Jia and
                  Fuyi Li and
                  Chen Li and
                  Yan Zhu and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Quan Zou and
                  Lachlan J. M. Coin and
                  Jiangning Song},
  title        = {Critical assessment of computational tools for prokaryotic and eukaryotic
                  promoter prediction},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {2},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbab551},
  doi          = {10.1093/BIB/BBAB551},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangJLLZAWZCS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PengWGGLGS22,
  author       = {Xinxin Peng and
                  Xiaoyu Wang and
                  Yuming Guo and
                  Zongyuan Ge and
                  Fuyi Li and
                  Xin Gao and
                  Jiangning Song},
  title        = {{RBP-TSTL} is a two-stage transfer learning framework for genome-scale
                  prediction of RNA-binding proteins},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {4},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac215},
  doi          = {10.1093/BIB/BBAC215},
  timestamp    = {Wed, 11 Jun 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/PengWGGLGS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BiLGWPGWYJS22,
  author       = {Yue Bi and
                  Fuyi Li and
                  Xudong Guo and
                  Zhikang Wang and
                  Tong Pan and
                  Yuming Guo and
                  Geoffrey I. Webb and
                  Jianhua Yao and
                  Cangzhi Jia and
                  Jiangning Song},
  title        = {Clarion is a multi-label problem transformation method for identifying
                  mRNA subcellular localizations},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {6},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac467},
  doi          = {10.1093/BIB/BBAC467},
  timestamp    = {Wed, 11 Jun 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BiLGWPGWYJS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuFWWLCLS22,
  author       = {Quanzhong Liu and
                  Honglin Fang and
                  Xiao Wang and
                  Miao Wang and
                  Shuqin Li and
                  Lachlan J. M. Coin and
                  Fuyi Li and
                  Jiangning Song},
  title        = {DeepGenGrep: a general deep learning-based predictor for multiple
                  genomic signals and regions},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {17},
  pages        = {4053--4061},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac454},
  doi          = {10.1093/BIOINFORMATICS/BTAC454},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuFWWLCLS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuWLS22,
  author       = {Lin Zhu and
                  Xiaoyu Wang and
                  Fuyi Li and
                  Jiangning Song},
  title        = {PreAcrs: a machine learning framework for identifying anti-CRISPR
                  proteins},
  journal      = {{BMC} Bioinform.},
  volume       = {23},
  number       = {1},
  pages        = {444},
  year         = {2022},
  url          = {https://doi.org/10.1186/s12859-022-04986-3},
  doi          = {10.1186/S12859-022-04986-3},
  timestamp    = {Thu, 27 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZhuWLS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/IqbalGLAZGYWS22,
  author       = {Shahid Iqbal and
                  Fang Ge and
                  Fuyi Li and
                  Tatsuya Akutsu and
                  Yuanting Zheng and
                  Robin B. Gasser and
                  Dong{-}Jun Yu and
                  Geoffrey I. Webb and
                  Jiangning Song},
  title        = {{PROST:} AlphaFold2-aware Sequence-Based Predictor to Estimate Protein
                  Stability Changes upon Missense Mutations},
  journal      = {J. Chem. Inf. Model.},
  volume       = {62},
  number       = {17},
  pages        = {4270--4282},
  year         = {2022},
  url          = {https://doi.org/10.1021/acs.jcim.2c00799},
  doi          = {10.1021/ACS.JCIM.2C00799},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/IqbalGLAZGYWS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenLZLWLABGLYG22,
  author       = {Zhen Chen and
                  Xuhan Liu and
                  Pei Zhao and
                  Chen Li and
                  Yanan Wang and
                  Fuyi Li and
                  Tatsuya Akutsu and
                  Chris Bain and
                  Robin B. Gasser and
                  Junzhou Li and
                  Zuoren Yang and
                  Xin Gao and
                  Lukasz A. Kurgan and
                  Jiangning Song},
  title        = {\emph{iFeatureOmega: } an integrative platform for engineering, visualization
                  and analysis of features from molecular sequences, structural and
                  ligand data sets},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {434--447},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac351},
  doi          = {10.1093/NAR/GKAC351},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ChenLZLWLABGLYG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiCGWYHBBS21,
  author       = {Fuyi Li and
                  Jinxiang Chen and
                  Zongyuan Ge and
                  Ya Wen and
                  Yanwei Yue and
                  Morihiro Hayashida and
                  Abdelkader Baggag and
                  Halima Bensmail and
                  Jiangning Song},
  title        = {Computational prediction and interpretation of both general and specific
                  types of promoters in Escherichia coli by exploiting a stacked ensemble-learning
                  framework},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {2},
  pages        = {2126--2140},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa049},
  doi          = {10.1093/BIB/BBAA049},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiCGWYHBBS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLWJCKSS21,
  author       = {Huaming Chen and
                  Fuyi Li and
                  Lei Wang and
                  Yaochu Jin and
                  Chi{-}Hung Chi and
                  Lukasz A. Kurgan and
                  Jiangning Song and
                  Jun Shen},
  title        = {Systematic evaluation of machine learning methods for identifying
                  human-pathogen protein-protein interactions},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {3},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa068},
  doi          = {10.1093/BIB/BBAA068},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChenLWJCKSS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuCWLJSL21,
  author       = {Quanzhong Liu and
                  Jinxiang Chen and
                  Yanze Wang and
                  Shuqin Li and
                  Cangzhi Jia and
                  Jiangning Song and
                  Fuyi Li},
  title        = {DeepTorrent: a deep learning-based approach for predicting {DNA} N4-methylcytosine
                  sites},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {3},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa124},
  doi          = {10.1093/BIB/BBAA124},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiuCWLJSL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuHGLSZY21,
  author       = {Yi{-}Heng Zhu and
                  Jun Hu and
                  Fang Ge and
                  Fuyi Li and
                  Jiangning Song and
                  Yang Zhang and
                  Dong{-}Jun Yu},
  title        = {Accurate multistage prediction of protein crystallization propensity
                  using deep-cascade forest with sequence-based features},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {3},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa076},
  doi          = {10.1093/BIB/BBAA076},
  timestamp    = {Tue, 21 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhuHGLSZY21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangLCLWLSL21,
  author       = {Xiao Liang and
                  Fuyi Li and
                  Jinxiang Chen and
                  Junlong Li and
                  Hao Wu and
                  Shuqin Li and
                  Jiangning Song and
                  Quanzhong Liu},
  title        = {Large-scale comparative review and assessment of computational methods
                  for anti-cancer peptide identification},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa312},
  doi          = {10.1093/BIB/BBAA312},
  timestamp    = {Sun, 19 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiangLCLWLSL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuLXASJ21,
  author       = {Yan Zhu and
                  Fuyi Li and
                  Dongxu Xiang and
                  Tatsuya Akutsu and
                  Jiangning Song and
                  Cangzhi Jia},
  title        = {Computational identification of eukaryotic promoters based on cascaded
                  deep capsule neural networks},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa299},
  doi          = {10.1093/BIB/BBAA299},
  timestamp    = {Sun, 19 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhuLXASJ21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MeiLXAFWIRACPS21,
  author       = {Shutao Mei and
                  Fuyi Li and
                  Dongxu Xiang and
                  Rochelle Ayala and
                  Pouya Faridi and
                  Geoffrey I. Webb and
                  Patricia T. Illing and
                  Jamie Rossjohn and
                  Tatsuya Akutsu and
                  Nathan P. Croft and
                  Anthony W. Purcell and
                  Jiangning Song},
  title        = {Anthem: a user customised tool for fast and accurate prediction of
                  binding between peptides and {HLA} class {I} molecules},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {5},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa415},
  doi          = {10.1093/BIB/BBAA415},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MeiLXAFWIRACPS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/XuLLXSMLYS21,
  author       = {Jing Xu and
                  Fuyi Li and
                  Andr{\'{e}} Leier and
                  Dongxu Xiang and
                  Hsin{-}Hui Shen and
                  Tatiana T. Marquez{-}Lago and
                  Jian Li and
                  Dong{-}Jun Yu and
                  Jiangning Song},
  title        = {Comprehensive assessment of machine learning-based methods for predicting
                  antimicrobial peptides},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {5},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbab083},
  doi          = {10.1093/BIB/BBAB083},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/XuLLXSMLYS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/IqbalLAAWS21,
  author       = {Shahid Iqbal and
                  Fuyi Li and
                  Tatsuya Akutsu and
                  David B. Ascher and
                  Geoffrey I. Webb and
                  Jiangning Song},
  title        = {Assessing the performance of computational predictors for estimating
                  protein stability changes upon missense mutations},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {6},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbab184},
  doi          = {10.1093/BIB/BBAB184},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/IqbalLAAWS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiGJCXSC21,
  author       = {Fuyi Li and
                  Xudong Guo and
                  Peipei Jin and
                  Jinxiang Chen and
                  Dongxu Xiang and
                  Jiangning Song and
                  Lachlan J. M. Coin},
  title        = {Porpoise: a new approach for accurate prediction of {RNA} pseudouridine
                  sites},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {6},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbab245},
  doi          = {10.1093/BIB/BBAB245},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiGJCXSC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCZLHZITWDS21,
  author       = {Yanan Wang and
                  Nicolas Coudray and
                  Yun Zhao and
                  Fuyi Li and
                  Changyuan Hu and
                  Yao{-}Zhong Zhang and
                  Seiya Imoto and
                  Aristotelis Tsirigos and
                  Geoffrey I. Webb and
                  Roger J. Daly and
                  Jiangning Song},
  title        = {{HEAL:} an automated deep learning framework for cancer histopathology
                  image analysis},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {22},
  pages        = {4291--4295},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab380},
  doi          = {10.1093/BIOINFORMATICS/BTAB380},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangCZLHZITWDS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdata/ChenLWLMLRLLS21,
  author       = {Jinxiang Chen and
                  Fuyi Li and
                  Miao Wang and
                  Junlong Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Jerico Revote and
                  Shuqin Li and
                  Quanzhong Liu and
                  Jiangning Song},
  title        = {BigFiRSt: {A} Software Program Using Big Data Technique for Mining
                  Simple Sequence Repeats From Large-Scale Sequencing Data},
  journal      = {Frontiers Big Data},
  volume       = {4},
  year         = {2021},
  url          = {https://doi.org/10.3389/fdata.2021.727216},
  doi          = {10.3389/FDATA.2021.727216},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fdata/ChenLWLMLRLLS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiWLZLZBSWLSX21,
  author       = {Menglu Li and
                  Yanan Wang and
                  Fuyi Li and
                  Yun Zhao and
                  Mengya Liu and
                  Sijia Zhang and
                  Yannan Bin and
                  Alexander Ian Smith and
                  Geoffrey I. Webb and
                  Jian Li and
                  Jiangning Song and
                  Junfeng Xia},
  title        = {A Deep Learning-Based Method for Identification of Bacteriophage-Host
                  Interaction},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {18},
  number       = {5},
  pages        = {1801--1810},
  year         = {2021},
  url          = {https://doi.org/10.1109/TCBB.2020.3017386},
  doi          = {10.1109/TCBB.2020.3017386},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/LiWLZLZBSWLSX21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiaZFLS21,
  author       = {Cangzhi Jia and
                  Meng Zhang and
                  Cunshuo Fan and
                  Fuyi Li and
                  Jiangning Song},
  title        = {Formator: Predicting Lysine Formylation Sites Based on the Most Distant
                  Undersampling and Safe-Level Synthetic Minority Oversampling},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {18},
  number       = {5},
  pages        = {1937--1945},
  year         = {2021},
  url          = {https://doi.org/10.1109/TCBB.2019.2957758},
  doi          = {10.1109/TCBB.2019.2957758},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/JiaZFLS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/au/Li20,
  author       = {Fuyi Li},
  title        = {A data-driven bioinformatic investigation into protein post-translational
                  modifications},
  school       = {Monash University, Australia},
  year         = {2020},
  url          = {https://doi.org/10.26180/5ec76ca14d030},
  doi          = {10.26180/5EC76CA14D030},
  timestamp    = {Tue, 28 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/phd/au/Li20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/appml/HuangLS20,
  author       = {Yongyan Huang and
                  Fuyi Li and
                  Junping Shi},
  title        = {Stability of synchronized steady state solution of diffusive Lotka-Volterra
                  predator-prey model},
  journal      = {Appl. Math. Lett.},
  volume       = {105},
  pages        = {106331},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.aml.2020.106331},
  doi          = {10.1016/J.AML.2020.106331},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/appml/HuangLS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WeiHLSSZ20,
  author       = {Leyi Wei and
                  Jie Hu and
                  Fuyi Li and
                  Jiangning Song and
                  Ran Su and
                  Quan Zou},
  title        = {Comparative analysis and prediction of quorum-sensing peptides using
                  feature representation learning and machine learning algorithms},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {1},
  pages        = {106--119},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bby107},
  doi          = {10.1093/BIB/BBY107},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/WeiHLSSZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenZLMLRZPAWCS20,
  author       = {Zhen Chen and
                  Pei Zhao and
                  Fuyi Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Jerico Nico De Leon Revote and
                  Yan Zhu and
                  David R. Powell and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Kuo{-}Chen Chou and
                  Alexander Ian Smith and
                  Roger J. Daly and
                  Jian Li and
                  Jiangning Song},
  title        = {iLearn : an integrated platform and meta-learner for feature engineering,
                  machine-learning analysis and modeling of DNA, {RNA} and protein sequence
                  data},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {3},
  pages        = {1047--1057},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz041},
  doi          = {10.1093/BIB/BBZ041},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChenZLMLRZPAWCS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiFMLRJZSWLWLS20,
  author       = {Fuyi Li and
                  Cunshuo Fan and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Jerico Nico De Leon Revote and
                  Cangzhi Jia and
                  Yan Zhu and
                  Alexander Ian Smith and
                  Geoffrey I. Webb and
                  Quanzhong Liu and
                  Leyi Wei and
                  Jian Li and
                  Jiangning Song},
  title        = {{PRISMOID:} a comprehensive 3D structure database for post-translational
                  modifications and mutations with functional impact},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {3},
  pages        = {1069--1079},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz050},
  doi          = {10.1093/BIB/BBZ050},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiFMLRJZSWLWLS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MeiLLMGCASLRPS20,
  author       = {Shutao Mei and
                  Fuyi Li and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Kailin Giam and
                  Nathan P. Croft and
                  Tatsuya Akutsu and
                  Alexander Ian Smith and
                  Jian Li and
                  Jamie Rossjohn and
                  Anthony W. Purcell and
                  Jiangning Song},
  title        = {A comprehensive review and performance evaluation of bioinformatics
                  tools for {HLA} class {I} peptide-binding prediction},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {4},
  pages        = {1119--1135},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz051},
  doi          = {10.1093/BIB/BBZ051},
  timestamp    = {Thu, 16 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MeiLLMGCASLRPS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenZLWSWABBS20,
  author       = {Zhen Chen and
                  Pei Zhao and
                  Fuyi Li and
                  Yanan Wang and
                  Alexander Ian Smith and
                  Geoffrey I. Webb and
                  Tatsuya Akutsu and
                  Abdelkader Baggag and
                  Halima Bensmail and
                  Jiangning Song},
  title        = {Comprehensive review and assessment of computational methods for predicting
                  {RNA} post-transcriptional modification sites from {RNA} sequences},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {5},
  pages        = {1676--1696},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz112},
  doi          = {10.1093/BIB/BBZ112},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChenZLWSWABBS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCLMLWRSAWKS20,
  author       = {Fuyi Li and
                  Jinxiang Chen and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Quanzhong Liu and
                  Yanze Wang and
                  Jerico Nico De Leon Revote and
                  Alexander Ian Smith and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Lukasz A. Kurgan and
                  Jiangning Song},
  title        = {DeepCleave: a deep learning predictor for caspase and matrix metalloprotease
                  substrates and cleavage sites},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {4},
  pages        = {1057--1065},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btz721},
  doi          = {10.1093/BIOINFORMATICS/BTZ721},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiCLMLWRSAWKS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaBCLLS20,
  author       = {Cangzhi Jia and
                  Yue Bi and
                  Jinxiang Chen and
                  Andr{\'{e}} Leier and
                  Fuyi Li and
                  Jiangning Song},
  title        = {{PASSION:} an ensemble neural network approach for identifying the
                  binding sites of RBPs on circRNAs},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {15},
  pages        = {4276--4282},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa522},
  doi          = {10.1093/BIOINFORMATICS/BTAA522},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiaBCLLS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiLLWXAWSM0S20,
  author       = {Fuyi Li and
                  Andr{\'{e}} Leier and
                  Quanzhong Liu and
                  Yanan Wang and
                  Dongxu Xiang and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Alexander Ian Smith and
                  Tatiana T. Marquez{-}Lago and
                  Jian Li and
                  Jiangning Song},
  title        = {Procleave: Predicting Protease-specific Substrate Cleavage Sites by
                  Combining Sequence and Structural Information},
  journal      = {Genom. Proteom. Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {52--64},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.gpb.2019.08.002},
  doi          = {10.1016/J.GPB.2019.08.002},
  timestamp    = {Mon, 17 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/gpb/LiLLWXAWSM0S20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiZZJLS20,
  author       = {Pengyu Li and
                  He Zhang and
                  Xuyang Zhao and
                  Cangzhi Jia and
                  Fuyi Li and
                  Jiangning Song},
  title        = {Pippin: {A} random forest-based method for identifying presynaptic
                  and postsynaptic neurotoxins},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {18},
  number       = {2},
  pages        = {2050008:1--2050008:21},
  year         = {2020},
  url          = {https://doi.org/10.1142/S0219720020500080},
  doi          = {10.1142/S0219720020500080},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/LiZZJLS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/0009ZLLMWBBS20,
  author       = {Zhen Chen and
                  Pei Zhao and
                  Fuyi Li and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Geoffrey I. Webb and
                  Abdelkader Baggag and
                  Halima Bensmail and
                  Jiangning Song},
  title        = {{PROSPECT:} {A} web server for predicting protein histidine phosphorylation
                  sites},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {18},
  number       = {4},
  pages        = {2050018:1--2050018:17},
  year         = {2020},
  url          = {https://doi.org/10.1142/S0219720020500183},
  doi          = {10.1142/S0219720020500183},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/0009ZLLMWBBS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/appml/RongLL19,
  author       = {Ting Rong and
                  Fuyi Li and
                  Zhanping Liang},
  title        = {Existence of nontrivial solutions for Kirchhoff-type problems with
                  jumping nonlinearities},
  journal      = {Appl. Math. Lett.},
  volume       = {95},
  pages        = {137--142},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.aml.2019.03.035},
  doi          = {10.1016/J.AML.2019.03.035},
  timestamp    = {Sun, 19 Jan 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/appml/RongLL19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SongWLARWC19,
  author       = {Jiangning Song and
                  Yanan Wang and
                  Fuyi Li and
                  Tatsuya Akutsu and
                  Neil D. Rawlings and
                  Geoffrey I. Webb and
                  Kuo{-}Chen Chou},
  title        = {iProt-Sub: a comprehensive package for accurately mapping and predicting
                  protease-specific substrates and cleavage sites},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {2},
  pages        = {638--658},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bby028},
  doi          = {10.1093/BIB/BBY028},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SongWLARWC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWLMLRHRACPPWS19,
  author       = {Fuyi Li and
                  Yanan Wang and
                  Chen Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Neil D. Rawlings and
                  Gholamreza Haffari and
                  Jerico Nico De Leon Revote and
                  Tatsuya Akutsu and
                  Kuo{-}Chen Chou and
                  Anthony W. Purcell and
                  Robert N. Pike and
                  Geoffrey I. Webb and
                  Alexander Ian Smith and
                  Trevor Lithgow and
                  Roger J. Daly and
                  James C. Whisstock and
                  Jiangning Song},
  title        = {Twenty years of bioinformatics research for protease-specific substrate
                  and cleavage site prediction: a comprehensive revisit and benchmarking
                  of existing methods},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {6},
  pages        = {2150--2166},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bby077},
  doi          = {10.1093/BIB/BBY077},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiWLMLRHRACPPWS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLLLMLAWXSLC19,
  author       = {Zhen Chen and
                  Xuhan Liu and
                  Fuyi Li and
                  Chen Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Tatsuya Akutsu and
                  Geoffrey I. Webb and
                  Dakang Xu and
                  Alexander Ian Smith and
                  Lei Li and
                  Kuo{-}Chen Chou and
                  Jiangning Song},
  title        = {Large-scale comparative assessment of computational predictors for
                  lysine post-translational modification sites},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {6},
  pages        = {2267--2290},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bby089},
  doi          = {10.1093/BIB/BBY089},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChenLLLMLAWXSLC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLMLFKCSJ19,
  author       = {Meng Zhang and
                  Fuyi Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Cunshuo Fan and
                  Chee Keong Kwoh and
                  Kuo{-}Chen Chou and
                  Jiangning Song and
                  Cangzhi Jia},
  title        = {MULTiPly: a novel multi-layer predictor for discovering general and
                  specific types of promoters},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {17},
  pages        = {2957--2965},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz016},
  doi          = {10.1093/BIOINFORMATICS/BTZ016},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangLMLFKCSJ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZPWCLLS19,
  author       = {Fuyi Li and
                  Yang Zhang and
                  Anthony W. Purcell and
                  Geoffrey I. Webb and
                  Kuo{-}Chen Chou and
                  Trevor Lithgow and
                  Chen Li and
                  Jiangning Song},
  title        = {Positive-unlabelled learning of glycosylation sites in the human proteome},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {112:1--112:17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-2700-1},
  doi          = {10.1186/S12859-019-2700-1},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LiZPWCLLS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLLSSW19,
  author       = {Xiaochuan Wang and
                  Chen Li and
                  Fuyi Li and
                  Varun S. Sharma and
                  Jiangning Song and
                  Geoffrey I. Webb},
  title        = {{SIMLIN:} a bioinformatics tool for prediction of S-sulphenylation
                  in the human proteome based on multi-stage ensemble-learning models},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {602:1--602:12},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3178-6},
  doi          = {10.1186/S12859-019-3178-6},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/WangLLSSW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/amc/ZhuLL18,
  author       = {Xiaoli Zhu and
                  Fuyi Li and
                  Yuhua Li},
  title        = {Global solutions and blow up solutions to a class of pseudo-parabolic
                  equations with nonlocal term},
  journal      = {Appl. Math. Comput.},
  volume       = {329},
  pages        = {38--51},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.amc.2018.02.003},
  doi          = {10.1016/J.AMC.2018.02.003},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/amc/ZhuLL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongLLMAHCWP18,
  author       = {Jiangning Song and
                  Fuyi Li and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Tatsuya Akutsu and
                  Gholamreza Haffari and
                  Kuo{-}Chen Chou and
                  Geoffrey I. Webb and
                  Robert N. Pike},
  title        = {PROSPERous: high-throughput prediction of substrate cleavage sites
                  for 90 proteases with improved accuracy},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {4},
  pages        = {684--687},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx670},
  doi          = {10.1093/BIOINFORMATICS/BTX670},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SongLLMAHCWP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZLLMWWSDCS18,
  author       = {Zhen Chen and
                  Pei Zhao and
                  Fuyi Li and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Yanan Wang and
                  Geoffrey I. Webb and
                  Alexander Ian Smith and
                  Roger J. Daly and
                  Kuo{-}Chen Chou and
                  Jiangning Song},
  title        = {iFeature: a Python package and web server for features extraction
                  and selection from protein and peptide sequences},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {14},
  pages        = {2499--2502},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty140},
  doi          = {10.1093/BIOINFORMATICS/BTY140},
  timestamp    = {Mon, 17 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenZLLMWWSDCS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLMLAPSLDSC18,
  author       = {Fuyi Li and
                  Chen Li and
                  Tatiana T. Marquez{-}Lago and
                  Andr{\'{e}} Leier and
                  Tatsuya Akutsu and
                  Anthony W. Purcell and
                  Alexander Ian Smith and
                  Trevor Lithgow and
                  Roger J. Daly and
                  Jiangning Song and
                  Kuo{-}Chen Chou},
  title        = {Quokka: a comprehensive tool for rapid and accurate prediction of
                  kinase family-specific phosphorylation sites in the human proteome},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {24},
  pages        = {4223--4231},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty522},
  doi          = {10.1093/BIOINFORMATICS/BTY522},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiLMLAPSLDSC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/amc/ZhangLL15b,
  author       = {Qi Zhang and
                  Fuyi Li and
                  Zhanping Liang},
  title        = {Existence of multiple positive solutions to nonhomogeneous Schr{\"{o}}dinger-Poisson
                  system},
  journal      = {Appl. Math. Comput.},
  volume       = {259},
  pages        = {353--363},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.amc.2015.02.044},
  doi          = {10.1016/J.AMC.2015.02.044},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/amc/ZhangLL15b.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLWWZWS15,
  author       = {Fuyi Li and
                  Chen Li and
                  Mingjun Wang and
                  Geoffrey I. Webb and
                  Yang Zhang and
                  James C. Whisstock and
                  Jiangning Song},
  title        = {GlycoMine: a machine learning-based approach for predicting N-, {C-}
                  and O-linked glycosylation in the human proteome},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {9},
  pages        = {1411--1419},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btu852},
  doi          = {10.1093/BIOINFORMATICS/BTU852},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiLWWZWS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/amc/ZhangLZ12,
  author       = {Qi Zhang and
                  Fuyi Li and
                  Xiaoli Zhu},
  title        = {Multiple sign-changing solutions to the Sturm-Liouville boundary value
                  problem with resonance},
  journal      = {Appl. Math. Comput.},
  volume       = {219},
  number       = {3},
  pages        = {1061--1072},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.amc.2012.07.012},
  doi          = {10.1016/J.AMC.2012.07.012},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/amc/ZhangLZ12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/appml/LiL05,
  author       = {Fuyi Li and
                  Zhanping Liang},
  title        = {Existence of positive periodic solutions to nonlinear second order
                  differential equations},
  journal      = {Appl. Math. Lett.},
  volume       = {18},
  number       = {11},
  pages        = {1256--1264},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.aml.2005.02.014},
  doi          = {10.1016/J.AML.2005.02.014},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/appml/LiL05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/appml/LiZ04,
  author       = {Fuyi Li and
                  Yajing Zhang},
  title        = {Multiple symmetric nonnegative solutions of second-order ordinary
                  differential equations},
  journal      = {Appl. Math. Lett.},
  volume       = {17},
  number       = {3},
  pages        = {261--267},
  year         = {2004},
  url          = {https://doi.org/10.1016/S0893-9659(04)90061-4},
  doi          = {10.1016/S0893-9659(04)90061-4},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/appml/LiZ04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}