DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. - Yang, Wenyi; Wang, Pingping; Luo, Meng; Cai, Yideng; Xu, Chang; Xue, Guangfu; Jin, Xiyun; Cheng, Rui; Que, Jinhao; Pang, Fenglan; Yang, Yuexin; Nie, Huan; et al. (Bioinform., 2023)

Single-cell transcriptomics reveals the interaction between peripheral CD4+ CTLs and mesencephalic endothelial cells mediated by IFNG in Parkinson's disease. - Yan, Shi; Si, Yao; Zhou, Wenyang; Cheng, Rui; Wang, Pingping; Wang, Di; Ding, Wencai; Shi, Wanying; Jiang, Qinghua; Yang, Fan; Yao, Lifen (Comput. Biol. Medicine, 2023)

Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development. - Cheng, Rui; Xu, Zhaochun; Luo, Meng; Wang, Pingping; Cao, Huimin; Jin, Xiyun; Zhou, Wenyang; Xiao, Lixing; Jiang, Qinghua (Briefings Bioinform., 2022)

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles. - Huang, Yan; Wang, Pingping; Zhou, Wenyang; Luo, Meng; Xu, Zhaochun; Cheng, Rui; Xu, Chang; Jin, Xiyun; Li, Yiqun; Jiang, Qinghua (Briefings Bioinform., 2021)

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. - Jin, Xiyun; Zhou, Wenyang; Luo, Meng; Wang, Pingping; Xu, Zhaochun; Ma, Kexin; Cao, Huimin; Xu, Chang; Huang, Yan; Cheng, Rui; Xiao, Lixing; Lin, Xiaoyu; et al. (Briefings Bioinform., 2021)