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ORCIDBibTeX records: Anamika Kothari
@article{DBLP:journals/cbm/SinghUPNSBSBKGK22,
author = {Prateek Singh and
Rajat Ujjainiya and
Satyartha Prakash and
Salwa Naushin and
Viren Sardana and
Nitin Bhatheja and
Ajay Pratap Singh and
Joydeb Barman and
Kartik Kumar and
Saurabh Gayali and
Raju Khan and
Birendra Singh Rawat and
Karthik Bharadwaj Tallapaka and
Mahesh Anumalla and
Amit Lahiri and
Susanta Kar and
Vivek Bhosale and
Mrigank Srivastava and
Madhav Nilakanth Mugale and
C. P. Pandey and
Shaziya Khan and
Shivani Katiyar and
Desh Raj and
Sharmeen Ishteyaque and
Sonu Khanka and
Ankita Rani and
Promila and
Jyotsna Sharma and
Anuradha Seth and
Mukul Dutta and
Nishant Saurabh and
Murugan Veerapandian and
Ganesh Venkatachalam and
Deepak Bansal and
Dinesh Gupta and
Prakash M. Halami and
Muthukumar Serva Peddha and
Ravindra P. Veeranna and
Anirban Pal and
Ranvijay Kumar Singh and
Suresh Kumar Anandasadagopan and
Parimala Karuppanan and
Syed Nasar Rahman and
Gopika Selvakumar and
Venkatesan Subramanian and
Malay Kumar Karmakar and
Harish Kumar Sardana and
Anamika Kothari and
Devendra Singh Parihar and
Anupma Thakur and
Anas Saifi and
Naman Gupta and
Yogita Singh and
Ritu Reddu and
Rizul Gautam and
Anuj Mishra and
Avinash Mishra and
Iranna Gogeri and
Geethavani Rayasam and
Yogendra Padwad and
Vikram Patial and
Vipin Hallan and
Damanpreet Singh and
Narendra Tirpude and
Partha Chakrabarti and
Sujay Krishna Maity and
Dipyaman Ganguly and
Ramakrishna Sistla and
Narender Kumar Balthu and
Kiran Kumar A and
Siva Ranjith and
B. Vijay Kumar and
Piyush Singh Jamwal and
Anshu Wali and
Sajad Ahmed and
Rekha Chouhan and
Sumit G. Gandhi and
Nancy Sharma and
Garima Rai and
Faisal Irshad and
Vijay Lakshmi Jamwal and
Masroor Ahmad Paddar and
Sameer Ullah Khan and
Fayaz Malik and
Debashish Ghosh and
Ghanshyam Thakkar and
Saroj Kanta Barik and
Prabhanshu Tripathi and
Yatendra Kumar Satija and
Sneha Mohanty and
Md. Tauseef Khan and
Umakanta Subudhi and
Pradip Sen and
Rashmi Kumar and
Anshu Bhardwaj and
Pawan Gupta and
Deepak Sharma and
Amit Tuli and
Saumya Ray chaudhuri and
Srinivasan Krishnamurthi and
L. Prakash and
Ch V. Rao and
B. N. Singh and
Arvindkumar Chaurasiya and
Meera Chaurasiyar and
Mayuri Bhadange and
Bhagyashree Likhitkar and
Sharada Mohite and
Yogita Patil and
Mahesh Kulkarni and
Rakesh Joshi and
Vaibhav Pandya and
Sachin Mahajan and
Amita Patil and
Rachel Samson and
Tejas Vare and
Mahesh Dharne and
Ashok Giri and
Shilpa Paranjape and
G. Narahari Sastry and
Jatin Kalita and
Tridip Phukan and
Prasenjit Manna and
Wahengbam Romi and
Pankaj Bharali and
Dibyajyoti Ozah and
Ravi Kumar Sahu and
Prachurjya Dutta and
Moirangthem Goutam Singh and
Gayatri Gogoi and
Yasmin Begam Tapadar and
Elapavalooru VSSK. Babu and
Rajeev K. Sukumaran and
Aishwarya R. Nair and
Anoop Puthiyamadam and
Prajeesh Kooloth Valappil and
Adrash Velayudhan Pillai Prasannakumari and
Kalpana Chodankar and
Samir Damare and
Ved Varun Agrawal and
Kumardeep Chaudhary and
Anurag Agrawal and
Shantanu Sengupta and
Debasis Dash},
title = {A machine learning-based approach to determine infection status in
recipients of {BBV152} (Covaxin) whole-virion inactivated SARS-CoV-2
vaccine for serological surveys},
journal = {Comput. Biol. Medicine},
volume = {146},
pages = {105419},
year = {2022},
url = {https://doi.org/10.1016/j.compbiomed.2022.105419},
doi = {10.1016/J.COMPBIOMED.2022.105419},
timestamp = {Tue, 05 Aug 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/SinghUPNSBSBKGK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/KarpPKKWP22,
author = {Peter D. Karp and
Suzanne M. Paley and
Markus Krummenacker and
Anamika Kothari and
Michael J. Wannemuehler and
Gregory J. Phillips},
title = {Pathway Tools Management of Pathway/Genome Data for Microbial Communities},
journal = {Frontiers Bioinform.},
volume = {2},
year = {2022},
url = {https://doi.org/10.3389/fbinf.2022.869150},
doi = {10.3389/FBINF.2022.869150},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/KarpPKKWP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarpMBKKLOSCFKP21,
author = {Peter D. Karp and
Peter E. Midford and
Richard Billington and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Wai Kit Ong and
Pallavi Subhraveti and
Ron Caspi and
Carol A. Fulcher and
Ingrid M. Keseler and
Suzanne M. Paley},
title = {Pathway Tools version 23.0 update: software for pathway/genome informatics
and systems biology},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {109--126},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz104},
doi = {10.1093/BIB/BBZ104},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KarpMBKKLOSCFKP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiBKKKMOPSK20,
author = {Ron Caspi and
Richard Billington and
Ingrid M. Keseler and
Anamika Kothari and
Markus Krummenacker and
Peter E. Midford and
Wai Kit Ong and
Suzanne M. Paley and
Pallavi Subhraveti and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes - a 2019 update},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D445--D453},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz862},
doi = {10.1093/NAR/GKZ862},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CaspiBKKKMOPSK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarpBCFLKKKMOOP19,
author = {Peter D. Karp and
Richard Billington and
Ron Caspi and
Carol A. Fulcher and
Mario Latendresse and
Anamika Kothari and
Ingrid M. Keseler and
Markus Krummenacker and
Peter E. Midford and
Quang Ong and
Wai Kit Ong and
Suzanne M. Paley and
Pallavi Subhraveti},
title = {The BioCyc collection of microbial genomes and metabolic pathways},
journal = {Briefings Bioinform.},
volume = {20},
number = {4},
pages = {1085--1093},
year = {2019},
url = {https://doi.org/10.1093/bib/bbx085},
doi = {10.1093/BIB/BBX085},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KarpBCFLKKKMOOP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiBFKKKLMOOP18,
author = {Ron Caspi and
Richard Billington and
Carol A. Fulcher and
Ingrid M. Keseler and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Peter E. Midford and
Quang Ong and
Wai Kit Ong and
Suzanne M. Paley and
Pallavi Subhraveti and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D633--D639},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx935},
doi = {10.1093/NAR/GKX935},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiBFKKKLMOOP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMSBBCFGK17,
author = {Ingrid M. Keseler and
Amanda Mackie and
Alberto Santos{-}Zavaleta and
Richard Billington and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ron Caspi and
Carol A. Fulcher and
Socorro Gama{-}Castro and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Mart{\'{\i}}n Peralta{-}Gil and
Pallavi Subhraveti and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Daniel S. Weaver and
Julio Collado{-}Vides and
Ian T. Paulsen and
Peter D. Karp},
title = {The EcoCyc database: reflecting new knowledge about Escherichia coli
{K-12}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D543--D550},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1003},
doi = {10.1093/NAR/GKW1003},
timestamp = {Thu, 01 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMSBBCFGK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarpLPKOBKWLSSF16,
author = {Peter D. Karp and
Mario Latendresse and
Suzanne M. Paley and
Markus Krummenacker and
Quang Ong and
Richard Billington and
Anamika Kothari and
Daniel S. Weaver and
Thomas J. Lee and
Pallavi Subhraveti and
Aaron Spaulding and
Carol A. Fulcher and
Ingrid M. Keseler and
Ron Caspi},
title = {Pathway Tools version 19.0 update: software for pathway/genome informatics
and systems biology},
journal = {Briefings Bioinform.},
volume = {17},
number = {5},
pages = {877--890},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv079},
doi = {10.1093/BIB/BBV079},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KarpLPKOBKWLSSF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiBFFFKKKLMO16,
author = {Ron Caspi and
Richard Billington and
Luciana Ferrer and
Hartmut Foerster and
Carol A. Fulcher and
Ingrid M. Keseler and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Lukas A. Mueller and
Quang Ong and
Suzanne M. Paley and
Pallavi Subhraveti and
Daniel S. Weaver and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes and the BioCyc
collection of pathway/genome databases},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {471--480},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1164},
doi = {10.1093/NAR/GKV1164},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiBFFFKKKLMO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiABDFFHKKKKLMOPSWWZK14,
author = {Ron Caspi and
Tomer Altman and
Richard Billington and
Kate Dreher and
Hartmut Foerster and
Carol A. Fulcher and
Timothy A. Holland and
Ingrid M. Keseler and
Anamika Kothari and
Aya Kubo and
Markus Krummenacker and
Mario Latendresse and
Lukas A. Mueller and
Quang Ong and
Suzanne M. Paley and
Pallavi Subhraveti and
Daniel S. Weaver and
Deepika Weerasinghe and
Peifen Zhang and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes and the BioCyc
collection of Pathway/Genome Databases},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {459--471},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1103},
doi = {10.1093/NAR/GKT1103},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiABDFFHKKKKLMOPSWWZK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AltmanTKCK13,
author = {Tomer Altman and
Michael Travers and
Anamika Kothari and
Ron Caspi and
Peter D. Karp},
title = {A systematic comparison of the MetaCyc and {KEGG} pathway databases},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {112},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-112},
doi = {10.1186/1471-2105-14-112},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AltmanTKCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13,
author = {Ingrid M. Keseler and
Amanda Mackie and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carol A. Fulcher and
Araceli M. Huerta and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Imke Schr{\"{o}}der and
Alexander Glennon Shearer and
Pallavi Subhraveti and
Michael Travers and
Deepika Weerasinghe and
Verena Weiss and
Julio Collado{-}Vides and
Robert P. Gunsalus and
Ian T. Paulsen and
Peter D. Karp},
title = {EcoCyc: fusing model organism databases with systems biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {605--612},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1027},
doi = {10.1093/NAR/GKS1027},
timestamp = {Thu, 01 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiADFSKKKLMOPPSTWZK12,
author = {Ron Caspi and
Tomer Altman and
Kate Dreher and
Carol A. Fulcher and
Pallavi Subhraveti and
Ingrid M. Keseler and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Lukas A. Mueller and
Quang Ong and
Suzanne M. Paley and
Anuradha Pujar and
Alexander Glennon Shearer and
Michael Travers and
Deepika Weerasinghe and
Peifen Zhang and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes and the BioCyc
collection of pathway/genome databases},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {742--753},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1014},
doi = {10.1093/NAR/GKR1014},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiADFSKKKLMOPPSTWZK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaspiADDFGKKKKLMPPPSZK10,
author = {Ron Caspi and
Tomer Altman and
Joseph M. Dale and
Kate Dreher and
Carol A. Fulcher and
Fred Gilham and
Pallavi Kaipa and
Athikkattuvalasu S. Karthikeyan and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Lukas A. Mueller and
Suzanne M. Paley and
Liviu Popescu and
Anuradha Pujar and
Alexander Glennon Shearer and
Peifen Zhang and
Peter D. Karp},
title = {The MetaCyc database of metabolic pathways and enzymes and the BioCyc
collection of pathway/genome databases},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {473--479},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp875},
doi = {10.1093/NAR/GKP875},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaspiADDFGKKKKLMPPPSZK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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