Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis. - Sreenivasan, Akshai P.; Vaivade, Aina; Noui, Yassine; Khoonsari, Payam Emami; Burman, Joachim; Spjuth, Ola; Kultima, Kim (npj Digit. Medicine, 2025)

Predicting protein network topology clusters from chemical structure using deep learning. - Sreenivasan, Akshai P.; Harrison, Philip J.; Schaal, Wesley; Matuszewski, Damian J.; Kultima, Kim; Spjuth, Ola (J. Cheminformatics, 2022)

Approaches for containerized scientific workflows in cloud environments with applications in life science. - Spjuth, Ola; Capuccini, Marco; Carone, Matteo; Larsson, Anders; Schaal, Wesley; Novella, Jon Ander; Stein, Oliver; Ekmefjord, Morgan; Tommaso, Paolo Di; Floden, Evan W.; Notredame, Cédric; Moreno, Pablo A.; et al. (F1000Research, 2021)

Container-based bioinformatics with Pachyderm. - Novella, Jon Ander; Khoonsari, Payam Emami; Herman, Stephanie; Whitenack, Daniel; Capuccini, Marco; Burman, Joachim; Kultima, Kim; Spjuth, Ola (Bioinform., 2019)

Interoperable and scalable data analysis with microservices: applications in metabolomics. - Khoonsari, Payam Emami; Moreno, Pablo A.; Bergmann, Sven; Burman, Joachim; Capuccini, Marco; Carone, Matteo; Cascante, Marta; Atauri, Pedro de; Foguet, Carles; González-Beltrán, Alejandra N.; Hankemeier, Thomas; Haug, Kenneth; et al. (Bioinform., 2019)

The future of metabolomics in ELIXIR. - Rijswijk, Merlijn N. van; Beirnaert, Charlie; Caron, Christophe; Cascante, Marta; Angel, Victoria Dominguez Del; Dunn, Warwick B.; Ebbels, Timothy M. D.; Giacomoni, Franck; González-Beltrán, Alejandra N.; Hankemeier, Thomas; Haug, Kenneth; Izquierdo-García, Jose L.; et al. (F1000Research, 2017)

Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE. - Kultima, Kim; Scholz, Birger; Alm, Henrik; Sköld, Karl; Svensson, Marcus; Crossman, Alan R.; Bezard, Erwan; Andrén, Per E.; Lönnstedt, Ingrid (BMC Bioinform., 2006)