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2020 – today
- 2023
[j13]Anastasia Krithara, James G. Mork, Anastasios Nentidis, Georgios Paliouras:
The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. Frontiers Res. Metrics Anal. 8 (2023)- [j12]Alastair R. Rae
, James G. Mork, Dina Demner-Fushman:
The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. 74(2): 205-218 (2023) - 2021
- [j11]Chris J. Lu, Amanda Payne, James G. Mork:
Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods". J. Am. Medical Informatics Assoc. 28(3): 670 (2021) - [c41]Dina Demner-Fushman, Willie J. Rogers, James G. Mork:
Automatic recognition of figurative language in biomedical articles. SDU@AAAI 2021 - [c40]Victor Cid, James G. Mork:
Using Deep Neural Network Binary Classifiers to Infer MeSH Publication Types. AMIA 2021 - [c39]Daniel X. Le, James G. Mork, Sameer Antani:
Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection. AMIA 2021 - [c38]Chris J. Lu, Amanda Payne, James G. Mork:
Identifying Criteria for Antonym Generation from Collocates in Corpora. AMIA 2021 - [c37]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) 2021: 302-312 - 2020
- [j10]Chris J. Lu, Amanda Payne, James G. Mork:
The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications. J. Am. Medical Informatics Assoc. 27(10): 1600-1605 (2020) - [c36]Chris J. Lu, Amanda Payne, James G. Mork:
Enhanced Features in the SPECIALIST Lexicon - Antonyms. AMIA 2020 - [c35]Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman:
Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA 2020
2010 – 2019
- 2019
- [c34]Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman:
A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA 2019 - [c33]Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman:
Evaluation of System for Selective Indexing Classification. AMIA 2019 - [c32]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) 2019: 581-594 - 2018
- [c31]Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson:
Finding medication doses in the literature. AMIA 2018 - [c30]François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA 2018 - 2017
- [j9]James G. Mork, Alan R. Aronson, Dina Demner-Fushman:
12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. 8(1): 8:1-8:10 (2017) - 2016
- [c29]James G. Mork, Dina Demner-Fushman:
Resolving Hierarchical Ambiguity in Indexing Recommendations. AMIA 2016 - 2015
- [j8]Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson:
Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. 16: 113:1-113:12 (2015) - [c28]Dina Demner-Fushman, James G. Mork:
Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA 2015 - 2014
- [c27]James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson:
Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA 2014 - [c26]James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson:
Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) 2014: 1328-1336 - 2013
- [j7]Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson:
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. 14: 171 (2013) - [j6]Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz:
MeSH indexing based on automatically generated summaries. BMC Bioinform. 14: 208 (2013) - [c25]Dina Demner-Fushman, James G. Mork, Alan R. Aronson:
Mining MEDLINE for problems associated with vitamin D. AMIA 2013 - [c24]Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Comparison and combination of several MeSH indexing approaches. AMIA 2013 - [c23]Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson:
Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL 2013: 102-110 - [c22]Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson:
Identifying Publication Types Using Machine Learning. BioASQ@CLEF 2013 - [c21]James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson:
The NLM Medical Text Indexer System for Indexing Biomedical Literature. BioASQ@CLEF 2013 - 2012
- [j5]Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. 6(2): 151-160 (2012) - [c20]Anna Ripple, Lou Knecht, John Rozier, James G. Mork:
Structured Abstracts in MEDLINE: Implementation Based on a Retrospective Cohort Study. AMIA 2012 - [c19]Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson:
MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI 2012: 737-742 - [c18]Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson:
NLM at TREC 2012 Medical Records Track. TREC 2012 - 2010
- [j4]James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson:
Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. 17(5): 536-539 (2010) - [j3]Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson:
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics 43(4): 587-594 (2010)
2000 – 2009
- 2009
- [j2]Aurélie Névéol, James G. Mork, Alan R. Aronson:
Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinform. 25(20): 2770-2771 (2009) - [j1]Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson:
A recent advance in the automatic indexing of the biomedical literature. J. Biomed. Informatics 42(5): 814-823 (2009) - 2008
- [c17]Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman:
Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA 2008 - 2007
- [c16]Aurélie Névéol, Sonya E. Shooshan, James G. Mork, Alan R. Aronson:
Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool. AMIA 2007 - [c15]Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers:
From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL 2007: 105-112 - [c14]Aurélie Névéol, James G. Mork, Alan R. Aronson:
Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. BioNLP@ACL 2007: 183-190 - [c13]Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson:
Combining Resources to Find Answers to Biomedical Questions. TREC 2007 - 2005
- [c12]Aurélie Névéol, James G. Mork, Alan R. Aronson, Stéfan Jacques Darmoni:
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. AMIA 2005 - 2004
- [c11]Alan R. Aronson, James G. Mork, Clifford W. Gay, Susanne M. Humphrey, Willie J. Rogers:
The NLM Indexing Initiative's Medical Text Indexer. MedInfo 2004: 268-272 - [c10]George R. Kim, Alan R. Aronson, James G. Mork, Bernard A. Cohen, Christoph U. Lehmann:
Application of a Medical Text Indexer to an Online Dermatology Atlas. MedInfo 2004: 287-291 - [c9]Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu:
Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC 2004 - 2003
- [c8]Joyce A. Mitchell, Alan R. Aronson, James G. Mork, Lillian C. Folk, Susanne M. Humphrey, Janice M. Ward:
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA 2003 - [c7]Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider:
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC 2003: 441-450 - 2002
- [c6]Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork:
Finding UMLS Metathesaurus concepts in MEDLINE. AMIA 2002 - 2001
- [c5]Marc Weeber, James G. Mork, Alan R. Aronson:
Developing a test collection for biomedical word sense disambiguation. AMIA 2001 - 2000
- [c4]Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur:
The NLM Indexing Initiative. AMIA 2000 - [c3]Marc Weeber, Henny Klein, Alan R. Aronson, James G. Mork, Lolkje T. W. de Jong-van den Berg, Rein Vos:
Text-based discovery in biomedicine: the architecture of the DAD-system. AMIA 2000
1990 – 1999
- 1999
- [c2]Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray:
Automated Assignment of Medical Subject Headings. AMIA 1999 - [c1]W. John Wilbur, George F. Hazard Jr., Guy Divita, James G. Mork, Alan R. Aronson, Allen C. Browne:
Analysis of biomedical text for chemical names: a comparison of three methods. AMIA 1999
Coauthor Index
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