pyBedGraph: a python package for fast operations on 1D genomic signal tracks - Henry B. Zhang; Minji Kim; Jeffrey H. Chuang; Yijun Ruan (Bioinform., 2020)

Integrative Deep Learning for PanCancer Molecular Subtype Classification Using Histopathological Images and RNAseq Data - Fatima Zare; Javad Noorbakhsh; Tianyu Wang; Jeffrey H. Chuang; Sheida Nabavi (BCB '20: 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Virtual Event, USA, September 21-24, 2020, 2020)

The effect of blurring on lung cancer subtype classification accuracy of convolutional neural networks - Tejal Nair; Ali Foroughi Pour; Jeffrey H. Chuang (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, Virtual Event, South Korea, December 16-19, 2020, 2020)

Longitudinal molecular trajectories of diffuse glioma in adults - Floris P. Barthel; Kevin C. Johnson; Frederick S. Varn; Anzhela D. Moskalik; Georgette Tanner; Emre Kocakavuk; Kevin J. Anderson; Olajide Abiola; Kenneth D. Aldape; Kristin D. Alfaro; Donat Alpar; Samirkumar B. Amin; et al. (Nat., 2019)

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors - Yingqian Ada Zhan; Charles Gregory Wray; Sandeep Namburi; Spencer T. Glantz; Reinhard C. Laubenbacher; Jeffrey H. Chuang (PLoS Comput. Biol., 2019)

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data - Iván Dotú; Scott I. Adamson; Benjamin Coleman; Cyril Fournier; Emma Ricart-Altimiras; Eduardo Eyras; Jeffrey H. Chuang (PLoS Comput. Biol., 2018)

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens - Preeti Bais; Sandeep Namburi; Daniel M. Gatti; Xinyu Zhang; Jeffrey H. Chuang (Bioinform., 2017)

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences - Yang Ding; William Andrew Lorenz; Jeffrey H. Chuang (BMC Bioinform., 2012)

cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation - Jason Persampieri; Deborah I. Ritter; Daniel Lees; Jessica Lehoczky; Qiang Li; Su Guo; Jeffrey H. Chuang (Bioinform., 2008)