Matrix-Variate Regression for Sparse, Low-Rank Estimation of Brain Connectivities Associated With a Clinical Outcome. - Brzyski, Damian; Hu, Xixi; Goñi, Joaquín; Ances, Beau M.; Randolph, Timothy W.; Harezlak, Jaroslaw (IEEE Trans. Biomed. Eng., 2024)

Preserving Human Large-Scale Brain Connectivity Fingerprint Identifiability with Random Projections. - Duong-Tran, Duy; Magsino, Mark; Goñi, Joaquín; Shen, Li (2024)

Volume-Optimal Persistence Homological Scaffolds of Hemodynamic Networks Covary with MEG Theta-Alpha Aperiodic Dynamics. - Nguyen, Nghi; Hou, Tao; Amico, Enrico; Zheng, Jingyi; Huang, Huajun; Kaplan, Alan D.; Petri, Giovanni; Goñi, Joaquín; Kaufmann, Ralph; Zhao, Yize; Duong-Tran, Duy; Shen, Li (2024)

Improving Functional Connectome Fingerprinting with Degree-Normalization. - Chiêm, Benjamin; Abbas, Kausar; Amico, Enrico; Duong-Tran, Duy Anh; Crevecoeur, Frédéric; Goñi, Joaquín (Brain Connect., 2022)

Investigating cognitive ability using action-based models of structural brain networks. - Arora, Viplove; Amico, Enrico; Goñi, Joaquín; Ventresca, Mario (J. Complex Networks, 2022)

Geodesic Distance on Optimally Regularized Functional Connectomes Uncovers Individual Fingerprints. - Abbas, Kausar; Liu, Mintao; Venkatesh, Manasij; Amico, Enrico; Kaplan, Alan David; Ventresca, Mario; Pessoa, Luiz; Harezlak, Jaroslaw; Goñi, Joaquín (Brain Connect., 2021)

Interactive Visualization of Deep Learning for 3D Brain Data Analysis. - Li, Huang; Fang, Shiaofen; Goñi, Joaquín; Saykin, Andrew J.; Shen, Li (2021)

Brain-wide structural connectivity alterations under the control of Alzheimer risk genes. - Yan, Jingwen; Raja, V. Vinesh; Huang, Zhi; Amico, Enrico; Nho, Kwangsik; Fang, Shiaofen; Sporns, Olaf; Wu, Yu-Chien; Saykin, Andrew J.; Goñi, Joaquín; Shen, Li (Int. J. Comput. Biol. Drug Des., 2020)

The disengaging brain: Dynamic transitions from cognitive engagement and alcoholism risk. - Amico, Enrico; Dzemidzic, Mario; Oberlin, Brandon G.; Carron, Claire R.; Harezlak, Jaroslaw; Goñi, Joaquín; Kareken, David A. (NeuroImage, 2020)

GEFF: Graph embedding for functional fingerprinting. - Abbas, Kausar; Amico, Enrico; Svaldi, Diana Otero; Tipnis, Uttara; Duong-Tran, Duy Anh; Liu, Mintao; Rajapandian, Meenusree; Harezlak, Jaroslaw; Ances, Beau M.; Goñi, Joaquín (NeuroImage, 2020)

Modeling Communication Processes in the Human Connectome through Cooperative Learning. - Tipnis, Uttara; Amico, Enrico; Ventresca, Mario; Goñi, Joaquín (IEEE Trans. Netw. Sci. Eng., 2020)

A Sparsity Inducing Nuclear-Norm Estimator (SpINNEr) for Matrix-Variate Regression in Brain Connectivity Analysis. - Brzyski, Damian; Hu, Xixi; Goñi, Joaquín; Ances, Beau M.; Randolph, Timothy W.; Harezlak, Jaroslaw (CoRR, 2020)

Uncovering multi-site identifiability based on resting-state functional connectomes. - Bari, Sumra; Amico, Enrico; Vike, Nicole L.; Talavage, Thomas M.; Goñi, Joaquín (NeuroImage, 2019)

Joint exploration and mining of memory-relevant brain anatomic and connectomic patterns via a three-way association model. - Yan, Jingwen; Liu, Kefei; Lv, Huang; Amico, Enrico; Risacher, Shannon L.; Wu, Yu-Chien; Fang, Shiaofen; Sporns, Olaf; Saykin, Andrew J.; Goñi, Joaquín; Shen, Li (2018)

Heritability Estimation of Reliable Connectomic Features. - Xie, Linhui; Amico, Enrico; Salama, Paul; Wu, Yu-Chien; Fang, Shiaofen; Sporns, Olaf; Saykin, Andrew J.; Goñi, Joaquín; Yan, Jingwen; Shen, Li (2018)

Towards Subject and Diagnostic Identifiability in the Alzheimer's Disease Spectrum Based on Functional Connectomes. - Svaldi, Diana O.; Goñi, Joaquín; Sanjay, Apoorva Bharthur; Amico, Enrico; Risacher, Shannon L.; West, John D.; Dzemidzic, Mario; Saykin, Andrew J.; Apostolova, Liana G. (2018)

Brain explorer for connectomic analysis. - Li, Huang; Fang, Shiaofen; Contreras, Joey A.; West, John D.; Risacher, Shannon L.; Wang, Yang; Sporns, Olaf; Saykin, Andrew J.; Goñi, Joaquín; Shen, Li (Brain Informatics, 2017)

Mapping the functional connectome traits of levels of consciousness. - Amico, Enrico; Marinazzo, Daniele; Perri, Carol Di; Heine, Lizette; Annen, Jitka; Martial, Charlotte; Dzemidzic, Mario; Kirsch, Muriëlle; Bonhomme, Vincent; Laureys, Steven; Goñi, Joaquín (NeuroImage, 2017)

BECA: A Software Tool for Integrated Visualization of Human Brain Data. - Li, Huang; Fang, Shiaofen; Zigon, Bob; Sporns, Olaf; Saykin, Andrew J.; Goñi, Joaquín; Shen, Li (2017)

Dynamic Generative Model of the Human Brain in Resting-State. - Guo, Dali; Arora, Viplove; Amico, Enrico; Goñi, Joaquín; Ventresca, Mario (2017)

Generative models of the human connectome. - Betzel, Richard F.; Avena-Koenigsberger, Andrea; Goñi, Joaquín; He, Ye; Reus, Marcel A. de; Griffa, Alessandra; Vértes, Petra E.; Misic, Bratislav; Thiran, Jean-Philippe; Hagmann, Patric; Heuvel, Martijn P. van den; Zuo, Xi-Nian; et al. (NeuroImage, 2016)

Multigraph Visualization for Feature Classification of Brain Network Data. - Wang, Jiachen; Fang, Shiaofen; Li, Huang; Goñi, Joaquín; Saykin, Andrew J.; Shen, Li (2016)

Integrated Visualization of Human Brain Connectome Data. - Li, Huang; Fang, Shiaofen; Goñi, Joaquín; Contreras, Joey A.; Liang, Yanhua; Cai, Chengtao; West, John D.; Risacher, Shannon L.; Wang, Yang; Sporns, Olaf; Saykin, Andrew J.; Shen, Li (2015)

Identifying Connectome Module Patterns via New Balanced Multi-graph Normalized Cut. - Gao, Hongchang; Cai, Chengtao; Yan, Jingwen; Yan, Lin; Cortes, Joaquín Goñi; Wang, Yang; Nie, Feiping; West, John D.; Saykin, Andrew J.; Shen, Li; Huang, Heng (2015)

Multi-scale integration and predictability in resting state brain activity. - Kolchinsky, Artemy; Heuvel, Martijn P. van den; Griffa, Alessandra; Hagmann, Patric; Rocha, Luis M.; Sporns, Olaf; Goñi, Joaquín (Frontiers Neuroinformatics, 2014)

Changes in structural and functional connectivity among resting-state networks across the human lifespan. - Betzel, Richard F.; Byrge, Lisa; He, Ye; Goñi, Joaquín; Zuo, Xi-Nian; Sporns, Olaf (NeuroImage, 2014)

A Network Convergence Zone in the Hippocampus. - Misic, Bratislav; Goñi, Joaquín; Betzel, Richard F.; Sporns, Olaf; McIntosh, Anthony Randal (PLoS Comput. Biol., 2014)

Multi-scale community organization of the human structural connectome and its relationship with resting-state functional connectivity. - Betzel, Richard F.; Griffa, Alessandra; Avena-Koenigsberger, Andrea; Goñi, Joaquín (Netw. Sci., 2013)

Robust estimation of fractal measures for characterizing the structural complexity of the human brain: Optimization and reproducibility. - Goñi, Joaquín; Sporns, Olaf; Cheng, Hu; Aznárez-Sanado, Maite; Wang, Yang; Josa, Santiago; Arrondo, Gonzalo; Mathews, Vincent P.; Hummer, Tom A.; Kronenberger, William G.; Avena-Koenigsberger, Andrea; Saykin, Andrew J.; et al. (NeuroImage, 2013)

Modeling the effector - regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis. - Mendizábal, Nieves Vélez de; Carneiro, Jorge; Solé, Ricard V.; Goñi, Joaquín; Bragard, Jean; Martinez-Forero, Ivan; Martinez-Pasamar, Sara; Sepulcre, Jorge; Torrealdea, Francisco Javier; Bagnato, Francesca; García-Ojalvo, Jordi; Villoslada, Pablo (BMC Syst. Biol., 2011)

The semantic organization of the animal category: evidence from semantic verbal fluency and network theory. - Goñi, Joaquín; Arrondo, Gonzalo; Sepulcre, Jorge; Martincorena, Iñigo; Mendizábal, Nieves Vélez de; Corominas-Murtra, Bernat; Bejarano, Bartolomé; Ardanza-Trevijano, Sergio; Peraita, Herminia; Wall, Dennis P.; Villoslada, Pablo (Cogn. Process., 2011)

Switcher-Random-Walks: a Cognitive-Inspired Mechanism for Network Exploration. - Goñi, Joaquín; Martincorena, Iñigo; Corominas-Murtra, Bernat; Arrondo, Gonzalo; Ardanza-Trevijano, Sergio; Villoslada, Pablo (Int. J. Bifurc. Chaos, 2010)

Exploring the randomness of Directed Acyclic Networks - Goñi, Joaquín; Corominas-Murtra, Bernat; Solé, Ricard V.; Rodríguez-Caso, Carlos (CoRR, 2010)

Hierarchy and information in feedforward networks - Corominas-Murtra, Bernat; Goñi, Joaquín; Rodríguez-Caso, Carlos; Solé, Ricard V. (CoRR, 2010)

Brain pathways of verbal working memory: A lesion-function correlation study. - Sepulcre, Jorge; Masdeu, Joseph C.; Pastor, María A.; Goñi, Joaquín; Barbosa, Carla; Bejarano, Bartolomé; Villoslada, Pablo (NeuroImage, 2009)

Switcher-random-walks: a cognitive-inspired mechanism for network exploration - Goñi, Joaquín; Martincorena, Iñigo; Corominas-Murtra, Bernat; Arrondo, Gonzalo; Ardanza-Trevijano, Sergio; Villoslada, Pablo (CoRR, 2009)

A computational analysis of protein-protein interaction networks in neurodegenerative diseases. - Goñi, Joaquín; Esteban, Francisco José; Mendizábal, Nieves Vélez de; Sepulcre, Jorge; Ardanza-Trevijano, Sergio; Agirrezabal, Ion; Villoslada, Pablo (BMC Syst. Biol., 2008)

Mapping the brain pathways of declarative verbal memory: Evidence from white matter lesions in the living human brain. - Sepulcre, Jorge; Masdeu, Joseph C.; Sastre-Garriga, Jaume; Goñi, Joaquín; Mendizábal, Nieves Vélez de; Duque, Beatriz; Pastor, María A.; Bejarano, Bartolomé; Villoslada, Pablo (NeuroImage, 2008)

Fractal dimension and white matter changes in multiple sclerosis. - Esteban, Francisco José; Sepulcre, Jorge; Mendizábal, Nieves Vélez de; Goñi, Joaquín; Navas, Juan; Miras, Juan Ruiz de; Bejarano, Bartolomé; Masdeu, Joseph C.; Villoslada, Pablo (NeuroImage, 2007)