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Daniel M. Staines
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2020 – today
- 2020
- [j18]Kevin L. Howe
, Bruno Contreras-Moreira
, Nishadi De Silva
, Gareth Maslen
, Wasiu A. Akanni
, James E. Allen
, Jorge Álvarez-Jarreta
, Matthieu Barba
, Dan M. Bolser
, Lahcen Cambell, Manuel Carbajo
, Marc Chakiachvili
, Mikkel B. Christensen
, Carla A. Cummins
, Alayne Cuzick
, Paul Davis
, Silvie Fexova, Astrid Gall
, Nancy George, Laurent Gil
, Parul Gupta, Kim E. Hammond-Kosack
, Erin Haskell
, Sarah E. Hunt
, Pankaj Jaiswal
, Sophie H. Janacek
, Paul J. Kersey, Nick Langridge, Uma Maheswari
, Thomas Maurel
, Mark D. McDowall, Benjamin Moore
, Matthieu Muffato
, Guy Naamati
, Sushma Naithani
, Andrew Olson, Irene Papatheodorou
, Mateus Patricio, Michael Paulini
, Helder Pedro
, Emily Perry
, Justin Preece, Marc Rosello, Matthew Russell
, Vasily Sitnik, Daniel M. Staines, Joshua C. Stein
, Marcela K. Tello-Ruiz, Stephen J. Trevanion
, Martin Urban
, Sharon Wei, Doreen Ware, Gary Williams, Andrew D. Yates
, Paul Flicek
:
Ensembl Genomes 2020 - enabling non-vertebrate genomic research. Nucleic Acids Res. 48(Database-Issue): D689-D695 (2020)
2010 – 2019
- 2019
- [j17]Fiona Cunningham
, Premanand Achuthan
, Wasiu A. Akanni
, James E. Allen
, M. Ridwan Amode, Irina M. Armean
, Ruth Bennett
, Jyothish Bhai
, Konstantinos Billis
, Sanjay Boddu
, Carla A. Cummins
, Claire Davidson
, Kamalkumar Jayantilal Dodiya, Astrid Gall
, Carlos García-Girón
, Laurent Gil
, Tiago Grego
, Leanne Haggerty
, Erin Haskell
, Thibaut Hourlier
, Osagie G. Izuogu
, Sophie H. Janacek
, Thomas Juettemann
, Mike P. Kay
, Matthew R. Laird
, Ilias Lavidas
, Zhicheng Liu
, Jane E. Loveland
, José Carlos Marugán
, Thomas Maurel
, Aoife C. McMahon
, Benjamin Moore
, Joannella Morales
, Jonathan M. Mudge
, Michael Nuhn
, Denye N. Ogeh
, Anne Parker, Andrew Parton
, Mateus Patricio
, Ahamed Imran Abdul Salam
, Bianca M. Schmitt
, Helen Schuilenburg
, Daniel Sheppard
, Helen Sparrow, Eloise Stapleton, Marek Szuba
, Kieron R. Taylor
, Glen Threadgold
, Anja Thormann
, Alessandro Vullo
, Brandon Walts
, Andrea Winterbottom
, Amonida Zadissa
, Marc Chakiachvili
, Adam Frankish
, Sarah E. Hunt
, Myrto Kostadima
, Nick Langridge
, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines
, Stephen J. Trevanion
, Bronwen L. Aken
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2019. Nucleic Acids Res. 47(Database-Issue): D745-D751 (2019) - 2018
- [j16]Daniel R. Zerbino
, Premanand Achuthan
, Wasiu A. Akanni
, M. Ridwan Amode, Daniel Barrell
, Jyothish Bhai
, Konstantinos Billis
, Carla A. Cummins
, Astrid Gall
, Carlos García-Girón
, Laurent Gil
, Leo Gordon, Leanne Haggerty
, Erin Haskell
, Thibaut Hourlier
, Osagie G. Izuogu
, Sophie H. Janacek
, Thomas Juettemann
, Jimmy Kiang To, Matthew R. Laird
, Ilias Lavidas
, Zhicheng Liu, Jane E. Loveland
, Thomas Maurel
, William M. McLaren, Benjamin Moore
, Jonathan M. Mudge
, Daniel N. Murphy
, Victoria Newman, Michael Nuhn
, Denye N. Ogeh
, Chuang Kee Ong
, Anne Parker, Mateus Patricio
, Harpreet Singh Riat, Helen Schuilenburg
, Daniel Sheppard
, Helen Sparrow, Kieron R. Taylor
, Anja Thormann
, Alessandro Vullo
, Brandon Walts
, Amonida Zadissa
, Adam Frankish
, Sarah E. Hunt
, Myrto Kostadima, Nicholas Langridge
, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines, Stephen J. Trevanion
, Bronwen L. Aken, Fiona Cunningham
, Andrew D. Yates
, Paul Flicek
:
Ensembl 2018. Nucleic Acids Res. 46(Database-Issue): D754-D761 (2018) - [j15]Paul Julian Kersey
, James E. Allen
, Alexis Allot, Matthieu Barba
, Sanjay Boddu
, Bruce J. Bolt
, Denise Carvalho-Silva, Mikkel B. Christensen
, Paul Davis
, Christoph Grabmueller, Navin Kumar, Zicheng Liu, Thomas Maurel
, Benjamin Moore
, Mark D. McDowall
, Uma Maheswari
, Guy Naamati
, Victoria Newman, Chuang Kee Ong
, Michael Paulini
, Helder Pedro
, Emily Perry
, Matthew Russell, Helen Sparrow, Electra Tapanari, Kieron R. Taylor
, Alessandro Vullo
, Gareth Williams, Amonida Zadissa
, Andrew Olson, Joshua C. Stein
, Sharon Wei, Marcela K. Tello-Ruiz, Doreen Ware, Aurelien Luciani
, Simon C. Potter
, Robert D. Finn
, Martin Urban
, Kim E. Hammond-Kosack
, Dan M. Bolser
, Nishadi De Silva
, Kevin L. Howe
, Nicholas Langridge
, Gareth Maslen
, Daniel Michael Staines
, Andrew D. Yates
:
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Res. 46(Database-Issue): D802-D808 (2018) - 2017
- [j14]Magali Ruffier
, Andreas Kähäri
, Monika Komorowska
, Stephen Keenan, Matthew R. Laird
, Ian Longden, Glenn Proctor, Steve Searle, Daniel M. Staines
, Kieron R. Taylor
, Alessandro Vullo
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. Database J. Biol. Databases Curation 2017: bax020 (2017) - [j13]Bronwen L. Aken
, Premanand Achuthan
, Wasiu A. Akanni
, M. Ridwan Amode, Friederike Bernsdorff
, Jyothish Bhai
, Konstantinos Billis
, Denise Carvalho-Silva, Carla A. Cummins
, Peter Clapham, Laurent Gil, Carlos García-Girón
, Leo Gordon, Thibaut Hourlier
, Sarah E. Hunt, Sophie H. Janacek, Thomas Juettemann
, Stephen Keenan
, Matthew R. Laird
, Ilias Lavidas
, Thomas Maurel, William M. McLaren, Benjamin Moore
, Daniel N. Murphy
, Rishi Nag
, Victoria Newman, Michael Nuhn
, Chuang Kee Ong
, Anne Parker, Mateus Patricio, Harpreet Singh Riat, Daniel Sheppard, Helen Sparrow, Kieron R. Taylor, Anja Thormann, Alessandro Vullo
, Brandon Walts, Steven P. Wilder
, Amonida Zadissa
, Myrto Kostadima, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines
, Stephen J. Trevanion
, Fiona Cunningham
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2017. Nucleic Acids Res. 45(Database-Issue): D635-D642 (2017) - 2016
- [j12]Paul Julian Kersey
, James E. Allen
, Irina M. Armean
, Sanjay Boddu
, Bruce J. Bolt
, Denise Carvalho-Silva, Mikkel B. Christensen
, Paul Davis
, Lee J. Falin
, Christoph Grabmueller, Jay C. Humphrey, Arnaud Kerhornou, Julia Khobova, Naveen K. Aranganathan, Nicholas Langridge
, Ernesto Lowy-Gallego
, Mark D. McDowall, Uma Maheswari
, Michael Nuhn, Chuang Kee Ong
, Bert Overduin, Michael Paulini, Helder Pedro
, Emily Perry
, Giulietta Spudich, Electra Tapanari
, Brandon Walts, Gareth Williams, Marcela K. Tello-Ruiz, Joshua C. Stein
, Sharon Wei, Doreen Ware, Daniel M. Bolser, Kevin L. Howe
, Eugene Kulesha
, Daniel Lawson
, Gareth Maslen
, Daniel M. Staines:
Ensembl Genomes 2016: more genomes, more complexity. Nucleic Acids Res. 44(Database-Issue): 574-580 (2016) - [j11]Helder Pedro
, Uma Maheswari
, Martin Urban
, Alistair George Irvine, Alayne Cuzick
, Mark D. McDowall, Daniel M. Staines, Eugene Kulesha
, Kim Elizabeth Hammond-Kosack
, Paul Julian Kersey
:
PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Res. 44(Database-Issue): 688-693 (2016) - 2015
- [j10]Mark D. McDowall
, Midori A. Harris
, Antonia Lock
, Kim Rutherford
, Daniel M. Staines
, Jürg Bähler, Paul J. Kersey
, Stephen G. Oliver, Valerie Wood
:
PomBase 2015: updates to the fission yeast database. Nucleic Acids Res. 43(Database-Issue): 656-661 (2015) - [j9]Alejandra Medina-Rivera
, Matthieu Defrance
, Olivier Sand
, Carl Herrmann
, Jaime Abraham Castro-Mondragón
, Jeremy Delerce, Sébastien Jaeger, Christophe Blanchet, Pierre Vincens
, Christophe Caron, Daniel M. Staines
, Bruno Contreras-Moreira
, Marie Artufel, Lucie Charbonnier-Khamvongsa, Céline Hernandez
, Denis Thieffry
, Morgane Thomas-Chollier
, Jacques van Helden
:
RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Res. 43(Webserver-Issue): W50-W56 (2015) - [j8]Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James E. Allen
, Olivier Arnaiz
, Mohammad Hamza Awedh
, Richard A. Baldock
, Giulia Barbiera, Philippe Bardou
, Tim Beck
, Andrew Blake
, Merideth Bonierbale, Anthony J. Brookes, Gabriele Bucci
, Iwan Buetti, Sarah W. Burge
, Cédric Cabau, Joseph W. Carlson, Claude Chelala
, Charalambos Chrysostomou, Davide Cittaro
, Olivier Collin
, Raul Cordova, Rosalind J. Cutts, Erik Dassi
, Alex Di Génova
, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras
, Julio Fernandez-Banet
, Simon A. Forbes, Robert C. Free
, Takatomo Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David M. Goodstein
, Kristian A. Gray, José Afonso Guerra-Assunção
, Bernard Haggarty, Dongjin Han, Byungwoo Han, Todd W. Harris, Jayson Harshbarger, Robert K. Hastings
, Richard D. Hayes
, Claire Hoede
, Shen Hu, Zhi-Liang Hu, Lucie N. Hutchins, Zhengyan Kan, Hideya Kawaji
, Aminah-Olivia Keliet, Arnaud Kerhornou, Sunghoon Kim
, Rhoda Kinsella, Christophe Klopp
, Lei Kong, Daniel Lawson
, Dejan Lazarevic
, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Liò
, Chu-Jun Liu, Jie Luo, Alejandro Maass
, Jérôme Mariette, Thomas Maurel
, Stefania Merella, Azza Mostafa Mohamed, François Moreews
, Nabihoudine Ibouniyamine, Nelson Ndegwa
, Céline Noirot, Christian Perez-Llamas, Michael Primig
, Alessandro Quattrone
, Hadi Quesneville
, Davide Rambaldi, James M. Reecy
, Michela Riba
, Steven Rosanoff
, Amna Ali Saddiq
, Elisa Salas
, Olivier Sallou, Rebecca Shepherd, Reinhard Simon
, Linda Sperling
, William Spooner, Daniel M. Staines
, Delphine Steinbach, Kevin R. Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa
, Shi-Jian Zhang, Arek Kasprzyk:
The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res. 43(Webserver-Issue): W589-W598 (2015) - 2014
- [j7]Paul Julian Kersey
, James E. Allen
, Mikkel B. Christensen
, Paul Davis
, Lee J. Falin
, Christoph Grabmueller, Daniel Seth Toney Hughes, Jay C. Humphrey, Arnaud Kerhornou
, Julia Khobova, Nicholas Langridge
, Mark D. McDowall
, Uma Maheswari
, Gareth Maslen
, Michael Nuhn
, Chuang Kee Ong
, Michael Paulini, Helder Pedro, Iliana Toneva, Mary Ann Tuli, Brandon Walts
, Gareth Williams, Derek Wilson, Ken Youens-Clark, Marcela K. Monaco, Joshua C. Stein
, Xuehong Wei, Doreen Ware, Daniel M. Bolser
, Kevin Lee Howe
, Eugene Kulesha
, Daniel Lawson
, Daniel Michael Staines
:
Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 42(Database-Issue): 546-552 (2014) - [j6]Marcela K. Monaco, Joshua C. Stein
, Sushma Naithani
, Sharon Wei, Palitha Dharmawardhana, Sunita Kumari, Vindhya Amarasinghe, Ken Youens-Clark
, James Thomason, Justin Preece, Shiran Pasternak, Andrew Olson, Yinping Jiao, Zhenyuan Lu, Daniel M. Bolser
, Arnaud Kerhornou
, Daniel M. Staines
, Brandon Walts, Guanming Wu, Peter D'Eustachio
, Robin Haw, David Croft, Paul J. Kersey
, Lincoln Stein, Pankaj Jaiswal, Doreen Ware:
Gramene 2013: comparative plant genomics resources. Nucleic Acids Res. 42(Database-Issue): 1193-1199 (2014) - 2012
- [j5]William Spooner, Ken Youens-Clark
, Daniel M. Staines
, Doreen Ware:
GrameneMart: the BioMart data portal for the Gramene project. Database J. Biol. Databases Curation 2012 (2012) - [j4]Paul J. Kersey
, Daniel M. Staines, Daniel Lawson, Eugene Kulesha
, Paul S. Derwent, Jay C. Humphrey, Daniel S. T. Hughes, Stephen Keenan, Arnaud Kerhornou, Gautier Koscielny, Nicholas Langridge
, Mark D. McDowall, Karine Megy
, Uma Maheswari, Michael Nuhn, Michael Paulini, Helder Pedro, Iliana Toneva, Derek Wilson, Andrew D. Yates, Ewan Birney:
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. Nucleic Acids Res. 40(Database-Issue): 91-97 (2012) - [j3]Valerie Wood
, Midori A. Harris
, Mark D. McDowall
, Kim Rutherford
, Brendan W. Vaughan
, Daniel M. Staines
, Martin Aslett, Antonia Lock
, Jürg Bähler, Paul J. Kersey
, Stephen G. Oliver:
PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 40(Database-Issue): 695-699 (2012) - 2011
- [j2]Rhoda Kinsella, Andreas Kähäri
, Syed Haider, Jorge Zamora, Glenn Proctor, Giulietta Spudich, Jeff Almeida-King
, Daniel M. Staines
, Paul S. Derwent, Arnaud Kerhornou
, Paul J. Kersey
, Paul Flicek
:
Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j1]Paul J. Kersey
, Daniel Lawson
, Ewan Birney
, Paul S. Derwent, Matthias Haimel
, Javier Herrero
, Stephen Keenan
, Arnaud Kerhornou
, Gautier Koscielny, Andreas Kähäri
, Rhoda Kinsella, Eugene Kulesha
, Uma Maheswari, Karine Megy
, Michael Nuhn
, Glenn Proctor, Daniel M. Staines
, Franck Valentin, Albert J. Vilella
, Andy Yates
:
Ensembl Genomes: Extending Ensembl across the taxonomic space. Nucleic Acids Res. 38(Database-Issue): 563-569 (2010)
Coauthor Index
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