Multi hash embeddings in spaCy. - Miranda, Lester James V.; Kádár, Ákos; Boyd, Adriane; Landeghem, Sofie Van; Søgaard, Anders; Honnibal, Matthew (CoRR, 2022)

Cell line name recognition in support of the identification of synthetic lethality in cancer from text. - Kaewphan, Suwisa; Landeghem, Sofie Van; Ohta, Tomoko; Peer, Yves Van de; Ginter, Filip; Pyysalo, Sampo (Bioinform., 2016)

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks. - Landeghem, Sofie Van; Parys, Thomas Van; Dubois, Marieke; Inzé, Dirk; Peer, Yves Van de (BMC Bioinform., 2016)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. - Hakala, Kai; Landeghem, Sofie Van; Salakoski, Tapio; Peer, Yves Van de; Ginter, Filip (BMC Bioinform., 2015)

EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. - Hakala, Kai; Landeghem, Sofie Van; Salakoski, Tapio; Peer, Yves Van de; Ginter, Filip (2013)

Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures. - Landeghem, Sofie Van; Kaewphan, Suwisa; Ginter, Filip; Peer, Yves Van de (2013)

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. - Landeghem, Sofie Van; Hakala, Kai; Rönnqvist, Samuel; Salakoski, Tapio; Peer, Yves Van de; Ginter, Filip (Adv. Bioinformatics, 2012)

Semantically linking molecular entities in literature through entity relationships. - Landeghem, Sofie Van; Björne, Jari; Abeel, Thomas; Baets, Bernard De; Salakoski, Tapio; Peer, Yves Van de (BMC Bioinform., 2012)

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. - Björne, Jari; Landeghem, Sofie Van; Pyysalo, Sampo; Ohta, Tomoko; Ginter, Filip; Peer, Yves Van de; Ananiadou, Sophia; Salakoski, Tapio (2012)

U-Compare bio-event meta-service: compatible BioNLP event extraction services. - Kano, Yoshinobu; Björne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, K. Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E.; Kilicoglu, Halil; Bergler, Sabine; et al. (BMC Bioinform., 2011)

High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers. - Landeghem, Sofie Van; Baets, Bernard De; Peer, Yves Van de; Saeys, Yvan (Comput. Intell., 2011)

EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. - Landeghem, Sofie Van; Ginter, Filip; Peer, Yves Van de; Salakoski, Tapio (2011)

Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction. - Landeghem, Sofie Van; Abeel, Thomas; Baets, Bernard De; Peer, Yves Van de (2011)

Discriminative and informative features for biomolecular text mining with ensemble feature selection. - Landeghem, Sofie Van; Abeel, Thomas; Saeys, Yvan; Peer, Yves Van de (Bioinform., 2010)

Highlights of the BioTM 2010 workshop on advances in bio text mining. - Abeel, Thomas; Landeghem, Sofie Van; Morante, Roser; Asch, Vincent Van; Peer, Yves Van de; Daelemans, Walter; Saeys, Yvan (BMC Bioinform., 2010)

Integration of Static Relations to Enhance Event Extraction from Text. - Landeghem, Sofie Van; Pyysalo, Sampo; Ohta, Tomoko; Peer, Yves Van de (2010)

Event based text mining for integrated network construction. - Saeys, Yvan; Landeghem, Sofie Van; Peer, Yves Van de (2010)

Analyzing text in search of bio-molecular events: a high-precision machine learning framework. - Landeghem, Sofie Van; Saeys, Yvan; Baets, Bernard De; Peer, Yves Van de (2009)