Normalization by distributional resampling of high throughput single-cell RNA-sequencing data - Jared Brown; Zijian Ni; Chitrasen Mohanty; Rhonda Bacher; Christina Kendziorski (Bioinform., 2021)

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets - Matthew N. Bernstein; Zijian Ni; Michael Collins; Mark E. Burkard; Christina Kendziorski; Ron M. Stewart (BMC Bioinform., 2021)

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells - Jared Brown; Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Michael P. Schwartz; Amy Van Aartsen; John W. Steill; Scott Swanson; Ron M. Stewart; James A. Thomson; Christina Kendziorski (PLoS Comput. Biol., 2021)

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics - Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Mitchell D. Probasco; Ning Leng; Bret Duffin; John W. Steill; Scott Swanson; Brian E. McIntosh; Ron M. Stewart; Christina Kendziorski; et al. (PLoS Comput. Biol., 2019)

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data - Ning Leng; Jeea Choi; Li-Fang Chu; James A. Thomson; Christina Kendziorski; Ron M. Stewart (Bioinform., 2016)

MADGiC: a model-based approach for identifying driver genes in cancer - Keegan D. Korthauer; Christina Kendziorski (Bioinform., 2015)

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments - Ning Leng; Yuan Li; Brian E. McIntosh; Bao Kim Nguyen; Bret Duffin; Shulan Tian; James A. Thomson; Colin N. Dewey; Ron M. Stewart; Christina Kendziorski (Bioinform., 2015)

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments - Ning Leng; John A. Dawson; James A. Thomson; Victor Ruotti; Anna I. Rissman; Bart M. G. Smits; Jill D. Haag; Michael N. Gould; Ron M. Stewart; Christina Kendziorski (Bioinform., 2013)

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments - Ning Leng; John A. Dawson; James A. Thomson; Victor Ruotti; Anna I. Rissman; Bart M. G. Smits; Jill D. Haag; Michael N. Gould; Ron M. Stewart; Christina Kendziorski (Bioinform., 2013)

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression - John A. Dawson; Shuyun Ye; Christina Kendziorski (Bioinform., 2012)

Statistical methods for gene set co-expression analysis - YounJeong Choi; Christina Kendziorski (Bioinform., 2009)

On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data - Michael A. Newton; C. M. Kendziorski; C. S. Richmond; Frederick R. Blattner; Kam-Wah Tsui (J. Comput. Biol., 2001)