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ORCIDBibTeX records: Naoki Nariai
@article{DBLP:journals/ploscb/ChapmanSPLCNWPC20,
author = {Lesley M. Chapman and
Noah Spies and
Patrick Pai and
Chun Shen Lim and
Andrew Carroll and
Giuseppe Narzisi and
Christopher M. Watson and
Christos Proukakis and
Wayne E. Clarke and
Naoki Nariai and
Eric T. Dawson and
Garan Jones and
Daniel J. Blankenberg and
Christian Brueffer and
Chunlin Xiao and
Sree Rohit Raj Kolora and
Noah Alexander and
Paul Wolujewicz and
Azza E. Ahmed and
Graeme Smith and
Saadlee Shehreen and
Aaron M. Wenger and
Marc Salit and
Justin M. Zook},
title = {A crowdsourced set of curated structural variants for the human genome},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {6},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007933},
doi = {10.1371/JOURNAL.PCBI.1007933},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ChapmanSPLCNWPC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GreenwaldLSBNF17,
author = {William W. Greenwald and
He Li and
Erin N. Smith and
Paola Benaglio and
Naoki Nariai and
Kelly A. Frazer},
title = {Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C
peak and other chromatin interaction data},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {207:1--207:6},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1621-0},
doi = {10.1186/S12859-017-1621-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GreenwaldLSBNF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/NariaiKMKN16,
author = {Naoki Nariai and
Kaname Kojima and
Takahiro Mimori and
Yosuke Kawai and
Masao Nagasaki},
title = {A Bayesian approach for estimating allele-specific expression from
RNA-Seq data with diploid genomes},
journal = {{BMC} Genom.},
volume = {17},
number = {{S-1}},
pages = {2},
year = {2016},
url = {https://doi.org/10.1186/s12864-015-2295-5},
doi = {10.1186/S12864-015-2295-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcgenomics/NariaiKMKN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MimoriNKSKYN15,
author = {Takahiro Mimori and
Naoki Nariai and
Kaname Kojima and
Yukuto Sato and
Yosuke Kawai and
Yumi Yamaguchi{-}Kabata and
Masao Nagasaki},
title = {Estimating copy numbers of alleles from population-scale high-throughput
sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-1}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S1-S4},
doi = {10.1186/1471-2105-16-S1-S4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MimoriNKSKYN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/NariaiKSMSKYYN15,
author = {Naoki Nariai and
Kaname Kojima and
Sakae Saito and
Takahiro Mimori and
Yukuto Sato and
Yosuke Kawai and
Yumi Yamaguchi{-}Kabata and
Jun Yasuda and
Masao Nagasaki},
title = {HLA-VBSeq: accurate {HLA} typing at full resolution from whole-genome
sequencing data},
journal = {{BMC} Genom.},
volume = {16},
number = {{S-2}},
pages = {S7},
year = {2015},
url = {https://doi.org/10.1186/1471-2164-16-S2-S7},
doi = {10.1186/1471-2164-16-S2-S7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcgenomics/NariaiKSMSKYYN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/KojimaNMYSKN14,
author = {Kaname Kojima and
Naoki Nariai and
Takahiro Mimori and
Yumi Yamaguchi{-}Kabata and
Yukuto Sato and
Yosuke Kawai and
Masao Nagasaki},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {HapMonster: {A} Statistically Unified Approach for Variant Calling
and Haplotyping Based on Phase-Informative Reads},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {107--118},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_9},
doi = {10.1007/978-3-319-07953-0\_9},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/KojimaNMYSKN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/OhtsukiNKMSKYSN14,
author = {Tomohiko Ohtsuki and
Naoki Nariai and
Kaname Kojima and
Takahiro Mimori and
Yukuto Sato and
Yosuke Kawai and
Yumi Yamaguchi{-}Kabata and
Tetsuo Shibuya and
Masao Nagasaki},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {{SVEM:} {A} Structural Variant Estimation Method Using Multi-mapped
Reads on Breakpoints},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {208--219},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_17},
doi = {10.1007/978-3-319-07953-0\_17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/OhtsukiNKMSKYSN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NariaiHKN13,
author = {Naoki Nariai and
Osamu Hirose and
Kaname Kojima and
Masao Nagasaki},
title = {{TIGAR:} transcript isoform abundance estimation method with gapped
alignment of RNA-Seq data by variational Bayesian inference},
journal = {Bioinform.},
volume = {29},
number = {18},
pages = {2292--2299},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt381},
doi = {10.1093/BIOINFORMATICS/BTT381},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NariaiHKN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KojimaNMTYSN13,
author = {Kaname Kojima and
Naoki Nariai and
Takahiro Mimori and
Mamoru Takahashi and
Yumi Yamaguchi{-}Kabata and
Yukuto Sato and
Masao Nagasaki},
title = {A statistical variant calling approach from pedigree information and
local haplotyping with phase informative reads},
journal = {Bioinform.},
volume = {29},
number = {22},
pages = {2835--2843},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt503},
doi = {10.1093/BIOINFORMATICS/BTT503},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KojimaNMTYSN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MimoriNKTOSYN13,
author = {Takahiro Mimori and
Naoki Nariai and
Kaname Kojima and
Mamoru Takahashi and
Akira Ono and
Yukuto Sato and
Yumi Yamaguchi{-}Kabata and
Masao Nagasaki},
title = {iSVP: an integrated structural variant calling pipeline from high-throughput
sequencing data},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-6}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S6-S8},
doi = {10.1186/1752-0509-7-S6-S8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MimoriNKTOSYN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangNSKK08,
author = {Xiaoyu Jiang and
Naoki Nariai and
Martin Steffen and
Simon Kasif and
Eric D. Kolaczyk},
title = {Integration of relational and hierarchical network information for
protein function prediction},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-350},
doi = {10.1186/1471-2105-9-350},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangNSKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JiangNSKGK08,
author = {Xiaoyu Jiang and
Naoki Nariai and
Martin Steffen and
Simon Kasif and
David Gold and
Eric D. Kolaczyk},
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {Combining Hierarchical Inference in Ontologies with Heterogeneous
Data Sources Improves Gene Function Prediction},
booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
pages = {411--416},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BIBM.2008.37},
doi = {10.1109/BIBM.2008.37},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JiangNSKGK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/NariaiTIM05,
author = {Naoki Nariai and
Yoshinori Tamada and
Seiya Imoto and
Satoru Miyano},
title = {Estimating gene regulatory networks and protein-protein interactions
of \emph{Saccharomyces cerevisiae} from multiple genome-wide data},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {212},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1133},
doi = {10.1093/BIOINFORMATICS/BTI1133},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eccb/NariaiTIM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccsa/HiroseNTBIM05,
author = {Osamu Hirose and
Naoki Nariai and
Yoshinori Tamada and
Hideo Bannai and
Seiya Imoto and
Satoru Miyano},
editor = {Osvaldo Gervasi and
Marina L. Gavrilova and
Vipin Kumar and
Antonio Lagan{\`{a}} and
Heow Pueh Lee and
Youngsong Mun and
David Taniar and
Chih Jeng Kenneth Tan},
title = {Estimating Gene Networks from Expression Data and Binding Location
Data via Boolean Networks},
booktitle = {Computational Science and Its Applications - {ICCSA} 2005, International
Conference, Singapore, May 9-12, 2005, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3482},
pages = {349--356},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11424857\_38},
doi = {10.1007/11424857\_38},
timestamp = {Thu, 28 Apr 2022 16:17:38 +0200},
biburl = {https://dblp.org/rec/conf/iccsa/HiroseNTBIM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NariaiKIM04,
author = {Naoki Nariai and
SunYong Kim and
Seiya Imoto and
Satoru Miyano},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Using Protein-Protein Interactions for Refining Gene Networks Estimated
from Microarray Data by Bayesian Networks},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {336--347},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/nariai.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NariaiKIM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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