Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer - Alexander E. Kel; Ulyana Boyarskikh; Philip Stegmaier; Leonid S. Leskov; Andrey V. Sokolov; Ivan S. Yevshin; Nikita Mandrik; Daria Stelmashenko; Jeannette Koschmann; Olga V. Kel-Margoulis; Mathias Krull; Anna Martínez-Cardús; et al. (BMC Bioinform., 2019)

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters - Igor V. Deyneko; Alexander E. Kel; Olga V. Kel-Margoulis; Elena V. Deineko; Edgar Wingender; Siegfried Weiss (BMC Bioinform., 2013)

Building a knowledge base for systems pathology - Holger Michael; Jennifer Hogan; Alexander E. Kel; Olga V. Kel-Margoulis; Frank Schacherer; Nico Voss; Edgar Wingender (Briefings Bioinform., 2008)

Integrating Pathway Data for Systems Pathology - Edgar Wingender; Jennifer Hogan; Frank Schacherer; Anatolij Potapov; Olga V. Kel-Margoulis (Silico Biol., 2007)

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations - Alexander E. Kel; Tatiana Konovalova; T. Waleev; Evgeny Cheremushkin; Olga V. Kel-Margoulis; Edgar Wingender (Bioinform., 2006)

Beyond microarrays: Finding key transcription factors controlling signal transduction pathways - Alexander E. Kel; Nico Voss; Ruy Jáuregui; Olga V. Kel-Margoulis; Edgar Wingender (BMC Bioinform., 2006)

TRANSFAC\(^®\) and its module TRANSCompel\(^®\): transcriptional gene regulation in eukaryotes - V. Matys; Olga V. Kel-Margoulis; Ellen Fricke; Ines Liebich; Sigrid Land; A. Barre-Dirrie; Ingmar Reuter; D. Chekmenev; Mathias Krull; Klaus Hornischer; Nico Voss; Philip Stegmaier; et al. (Nucleic Acids Res., 2006)

TRANSPATH\(^®\): an information resource for storing and visualizing signaling pathways and their pathological aberrations - Mathias Krull; Susanne Pistor; Nico Voss; Alexander E. Kel; Ingmar Reuter; Deborah Kronenberg; Holger Michael; Knut Schwarzer; Anatolij Potapov; Claudia Choi; Olga V. Kel-Margoulis; Edgar Wingender (Nucleic Acids Res., 2006)

Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm - T. Waleev; Dmitry Shtokalo; Tatiana Konovalova; Nico Voss; Evgeny Cheremushkin; Philip Stegmaier; Olga V. Kel-Margoulis; Edgar Wingender; Alexander E. Kel (Nucleic Acids Res., 2006)

Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation - Alexander E. Kel; Tatiana Konovalova; Tagir F. Valeev; Evgeny Cheremushkin; Olga V. Kel-Margoulis; Edgar Wingender (Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005, 2005)

From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression - Alexander E. Kel; Nico Voss; Tatiana Konovalova; Dmitri Tchekmenev; P. Wabnitz; Olga V. Kel-Margoulis; Edgar Wingender (Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004, 2004)

Composition-sensitive analysis of the human genome for regulatory signals - Olga V. Kel-Margoulis; Dmitri Tchekmenev; Alexander E. Kel; Ellen Gößling; Klaus Hornischer; Birgit Lewicki-Potapov; Edgar Wingender (Silico Biol., 2003)

TRANSFAC®: transcriptional regulation, from patterns to profiles - V. Matys; Ellen Fricke; R. Geffers; Ellen Gößling; Martin Haubrock; Reinhard Hehl; Klaus Hornischer; Dagmar Karas; Alexander E. Kel; Olga V. Kel-Margoulis; Dorothee-U. Kloos; Sigrid Land; et al. (Nucleic Acids Res., 2003)

MATCHTM: a tool for searching transcription factor binding sites in DNA sequences - Alexander E. Kel; Ellen Gößling; Ingmar Reuter; Evgeny Cheremushkin; Olga V. Kel-Margoulis; Edgar Wingender (Nucleic Acids Res., 2003)

TRANSCompel®: a database on composite regulatory elements in eukaryotic genes - Olga V. Kel-Margoulis; Alexander E. Kel; Ingmar Reuter; Igor Deineko; Edgar Wingender (Nucleic Acids Res., 2002)

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters - Olga V. Kel-Margoulis; T. G. Ivanova; Edgar Wingender; Alexander E. Kel (Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002, 2002)

ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters - Alexander E. Kel; Olga V. Kel-Margoulis; T. G. Ivanova; Edgar Wingender (Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany, 2001)

MATCH\(^TM\) - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes - Ellen Gößling; Olga V. Kel-Margoulis; Alexander E. Kel; Edgar Wingender (Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany, 2001)

TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes - Olga V. Kel-Margoulis; Igor Deineko; Ingmar Reuter; Edgar Wingender; Alexander E. Kel (Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany, 2001)

Transcription Regulatory Regions Database (TRRD): its status in 2000 - Nikolay A. Kolchanov; Olga A. Podkolodnaya; Elena A. Ananko; Elena V. Ignatieva; Irina L. Stepanenko; Olga V. Kel-Margoulis; Alexander E. Kel; Tatyana I. Merkulova; T. N. Goryachkovskaya; T. V. Busygina; Fedor A. Kolpakov; Nikolay L. Podkolodny; et al. (Nucleic Acids Res., 2000)

COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation - Olga V. Kel-Margoulis; Aida G. Romashchenko; Nikolay A. Kolchanov; Edgar Wingender; Alexander E. Kel (Nucleic Acids Res., 2000)

Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops - Alexander E. Kel; Igor Deineko; Olga V. Kel-Margoulis; Edgar Wingender; Vadim Ratner (Proceedings of the German Conference on Bioinformatics (GCB 2000), Heidelberg, October 5-7, 2000, 2000)

Transcription Regulatory Regions Database (TRRD): its status in 1999 - Nikolay A. Kolchanov; Elena A. Ananko; Olga A. Podkolodnaya; Elena V. Ignatieva; Irina L. Stepanenko; Olga V. Kel-Margoulis; Alexander E. Kel; Tatyana I. Merkulova; T. N. Goryachkovskaya; T. V. Busygina; Fedor A. Kolpakov; Nikolay L. Podkolodny; et al. (Nucleic Acids Res., 1999)

Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms - T. Heinemeyer; Xin Chen; Holger Karas; Alexander E. Kel; Olga V. Kel-Margoulis; Ines Liebich; T. Meinhardt; Ingmar Reuter; Frank Schacherer; Edgar Wingender (Nucleic Acids Res., 1999)

E2F composite units in promoters of cell cycle genes - Alexander E. Kel; Olga V. Kel-Margoulis; Edgar Wingender (Proceedings of the German Conference on Bioinformatics, GCB 1999, October 4-6, 1999, Hannover, Germany, 1999)

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL - T. Heinemeyer; Edgar Wingender; Ingmar Reuter; Henning Hermjakob; Alexander E. Kel; Olga V. Kel-Margoulis; Elena V. Ignatieva; Elena A. Ananko; Olga A. Podkolodnaya; Fedor A. Kolpakov; Nikolay L. Podkolodny; Nikolay A. Kolchanov (Nucleic Acids Res., 1998)

Combinatorial identification of promoters induced upon immune cell activation - Alexander E. Kel; Olga V. Kel-Margoulis; Vladimir N. Babenko; Nikolay A. Kolchanov; Edgar Wingender (Proceedings of the German Conference on Bioinformatics, GCB 1998, University of Cologne, Germany, October 1998, 1998)

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation - Edgar Wingender; Alexander E. Kel; Olga V. Kel-Margoulis; Holger Karas; T. Heinemeyer; P. Dietze; Rainer Knüppel; Aida G. Romashchenko; Nikolay A. Kolchanov (Nucleic Acids Res., 1997)