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ORCIDVítor A. P. Martins dos Santos
2020 – today
- 2024
[j16]Zuqi Li, Sonja Katz
, Edoardo Saccenti, David W. Fardo, Peter Claes, Vítor A. P. Martins dos Santos, Kristel Van Steen, Gennady V. Roshchupkin:
Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping. Briefings Bioinform. 25(6) (2024)- [j15]Elena Domínguez Romero, Stanislav Mazurenko, Martin Scheringer, Vítor A. P. Martins dos Santos, Chris T. A. Evelo, Mihail Anton, John M. Hancock, Anze Zupanic, María Suárez-Diez:
Making PBPK models more reproducible in practice. Briefings Bioinform. 25(6) (2024) - 2023
- [j14]Enrique Asin-Garcia, Zoë Robaey, Linde F. C. Kampers, Vítor A. P. Martins dos Santos:
Exploring the Impact of Tensions in Stakeholder Norms on Designing for Value Change: The Case of Biosafety in Industrial Biotechnology. Sci. Eng. Ethics 29(2): 9 (2023) - 2022
- [j13]Sonja Katz, Jaco Suijker, Christopher Hardt, Martin Bruun Madsen, Annebeth Meij-de Vries, Anouk Pijpe, Steinar Skrede, Ole Hyldegaard, Erik Solligård, Anna Norrby-Teglund, Edoardo Saccenti, Vítor A. P. Martins dos Santos:
Decision support system and outcome prediction in a cohort of patients with necrotizing soft-tissue infections. Int. J. Medical Informatics 167: 104878 (2022) - [j12]Maksim V. Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C. J. van Dam, María Suárez-Diez, Fabian Grammes, Róbert Anton Hafþórsson, Wout van Helvoirt, Jasper J. Koehorst, Peter J. Schaap, Yang Jin, Liv Torunn Mydland, Arne B. Gjuvsland, Simen R. Sandve, Vítor A. P. Martins dos Santos, Jon Olav Vik:
SALARECON connects the Atlantic salmon genome to growth and feed efficiency. PLoS Comput. Biol. 18(6) (2022) - [c4]Jennifer D'Souza, Anita Monteverdi, Muhammad Haris, Marco Anteghini, Kheir Eddine Farfar, Markus Stocker, Vítor A. P. Martins dos Santos, Sören Auer:
The Digitalization of Bioassays in the Open Research Knowledge Graph. DEXA (1) 2022: 63-68 - [i4]Jennifer D'Souza, Anita Monteverdi, Muhammad Haris, Marco Anteghini, Kheir Eddine Farfar, Markus Stocker, Vítor A. P. Martins dos Santos, Sören Auer:
The Digitalization of Bioassays in the Open Research Knowledge Graph. CoRR abs/2203.14574 (2022) - 2021
- [j11]Neeraj Sinha, Evert M. van Schothorst, Guido J. E. K. Hooiveld, Jaap Keijer, Vítor A. P. Martins dos Santos, María Suárez-Diez:
Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism. BMC Bioinform. 22(1): 574 (2021) - [c3]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
Easy Semantification of Bioassays. AI*IA 2021: 198-212 - [i3]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
Easy Semantification of Bioassays. CoRR abs/2111.15182 (2021) - 2020
- [c2]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
SciBERT-based Semantification of Bioassays in the Open Research Knowledge Graph. EKAW (Posters & Demos) 2020: 22-30 - [c1]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
Representing Semantified Biological Assays in the Open Research Knowledge Graph. ICADL 2020: 89-98 - [i2]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
Representing Semantified Biological Assays in the Open Research Knowledge Graph. CoRR abs/2009.07642 (2020) - [i1]Marco Anteghini, Jennifer D'Souza, Vítor A. P. Martins dos Santos, Sören Auer:
SciBERT-based Semantification of Bioassays in the Open Research Knowledge Graph. CoRR abs/2009.08801 (2020)
2010 – 2019
- 2018
- [j10]Jasper J. Koehorst, Jesse C. J. van Dam, Edoardo Saccenti, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap:
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles. Bioinform. 34(8): 1401-1403 (2018) - [j9]Erno Lindfors, Jesse C. J. van Dam, Carolyn M. C. Lam, Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez:
SyNDI: synchronous network data integration framework. BMC Bioinform. 19(1): 403:1-403:15 (2018) - [j8]Robert W. Smith, Rik P. van Rosmalen, Vítor A. P. Martins dos Santos, Christian Fleck:
DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems. BMC Syst. Biol. 12(1): 72:1-72:16 (2018) - 2016
- [j7]Ruben G. A. van Heck, Mathias Ganter, Vítor A. P. Martins dos Santos, Jörg Stelling:
Efficient Reconstruction of Predictive Consensus Metabolic Network Models. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j6]Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez:
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource. J. Biomed. Semant. 6: 39 (2015) - 2014
- [j5]Jesse C. J. van Dam, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez:
Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis. BMC Syst. Biol. 8: 111 (2014) - 2012
- [j4]Andreas Kremling, Katharina Pflüger-Grau, Max Chavarría, Jacek Puchalka, Vítor A. P. Martins dos Santos, Victor de Lorenzo:
Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida. BMC Syst. Biol. 6: 149 (2012) - 2011
- [j3]Kechi Fang, Hansheng Zhao, Changyue Sun, Carolyn M. C. Lam, Suhua Chang, Kunlin Zhang, Gurudutta Panda, Miguel Godinho, Vítor A. P. Martins dos Santos, Jing Wang:
Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction. BMC Syst. Biol. 5: 83 (2011) - [j2]Matthew A. Oberhardt, Jacek Puchalka, Vítor A. P. Martins dos Santos, Jason A. Papin:
Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis. PLoS Comput. Biol. 7(3) (2011)
2000 – 2009
- 2008
- [j1]Jacek Puchalka, Matthew A. Oberhardt, Miguel Godinho, Agata Bielecka, Daniela Regenhardt, Kenneth N. Timmis, Jason A. Papin, Vítor A. P. Martins dos Santos:
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology. PLoS Comput. Biol. 4(10) (2008)
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